Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0015414

Physical Location & Seq

Genomic Coordinates Reverse (-)

39814790 .. 39819649

Gene Structure 4860 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG232900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4503 bp

ATGACATTTACAGGAGTGCTGTCCCTGGCTACCTCACCCTTATTCCATTCAGAGTCCCCACTCTCATCTTCTTCTTCTCCTTCTTCAAATAAGGTATGCAAAAGCACTTGTCTTTCTTGCTCTCTAACTCAAGTACCTTCTACTTCTAGTTCTGGTAGTTCTGAGCAACCGAATGATAGTAACACTAGTCAAATAAACAATAACAAGAAATTTAGCTATAGCAGAGCTTCACCCTCAGTCAGATGGCCTCATTTGAAGCTCTCAGAAACTTACCCTTCACCTCCTCAGACCCAATTCACCCCTGTTGTGGAGGATGCCGGGTTTTCGACCCAACTCTCTGATTCTGATTCTGAGAGCAAAGAGGAAGGTGATGGTAATGTGGGTTTTGCAGCATCATCTTTGGATAAGAATGATGAAACCCAGTTAGTGTTGGGGAGGCCCAGCAAGACCAAGGCAAAGAAAATGACCAAATTGGCTCTTAAGAGAGCCAAGGATTGGAGGGAGAGAGTCAAGTTCTTTACTGATAGGATTTTGGGGTTGAAATCTGATGAGTTTGTGGCTGATGTGCTGGATGATAGGAAAGTACAGATGACCCCCACTGATTTTTGCTTTGTGGTGAAATGGGTGGGGCAGAAGAGCTGGCAGCGTGCGTTGGAGGTGTACGAGTGGCTGAATTTGCGCCACTGGTATGCCCCGAATGCACGAATGCTTGCAACTATCTTGGCTGTTCTTGGAAAGGCTAACCAGGAAGCTTTGGCTGTGGAGATATACACCAGGGCTGAGCCTGAAATTGGTAATACAGTCCAAGTGTACAATGCAATCATGGGTGTGTATGCACGAAGTGGTCGGTTTAAGAGGGTGCAAGAACTGCTCAACTTGATGCGTGAGCGGGGGTGTGAGCCAGACCTTGTGAGTCTCAACACTTTGATAAATGCTCGTCTTAGGTCAGGTGCCATGGTACCAAATTTGGCTATTGAACTTTTGAATGAGGTGAGGAGGTCGGGTCTTAGGCCAGATATAATCACTTACAATACTCTTATAAGCGGCTGTGCTCGTGAATCCAATTTGGAGGAGGCGGTGAAGGTATACGCTGACATGGAAGCACATAACTGTCAACCTGATCTTTGGACTTATAATGCCATGATTTCAGTATATGGCAGATGTGGGCAGTCGAGCAAAGCTGAGCAGCTCTTTAAGGAATTGGAGTCAAAAGGGTTTTTCCCTGATGCAGTGACATATAATTCTTTGTTGTATGCTTTTGCAAGAGAACTTAATATAGAAAAAGTCCGGGATATTGGTGAAGAGATGGTGAAAATGGGGTTTGCTAAAGATGAGATGACATACAATACTATTATCCACATGTATGGAAAGCAGGGCCAGCATGATCAAGCACAGCAGATTTACCGGGACATGAAAATGTTGGGTCGAATTCCTGATGCTGTTACGTACACTGTTTTGATAGATTCCCTTGGCAAAGAAAATAAGATTACAGAGGCCGCAAATGTGATGTCAGAAATGTTGGACAGTGGAGTAAAACCCACTCTTCGGACTTATAGTGCTTTAATGTGTGGATATGCGAAGGCTGGCAAACAGGTGGAGGCTCAAGAAACATTTGATTGTATGATTAAGTCTGGGATTAGACCAGATCATCTAGCATACTCAGTTATGCTTGATATCTTTCTCAGGTCCAACGAGACAAAGAAGGCAATGACATTGTACCAGGAAATGCTGCATGATGGTTTCATGCCAGATAATGCCCTTTACGAGGTAATGTTGCGGGTGCTTGGAACTGAAAACAAATTGGAAACTATTGAAAAAGTGATTAGAGACATGGAAAAGGTCGGTGGTATGAATGCACAGGTCATCTCTTCAATTCTTGTTAAGGGAGAATGCTATGATCATGCTGCTAAAATGTTAAGATTAGCCATCACCAGTGGTTATGAACTGGACCGGGAAAGTCTTTTTTCTATTCTCAGTTCATATAGTTCTTGTGGTAGACACTCAGAAGCATGTGAGTTGCTTGCATTTTTGAAAGAACATGCTCCCAGTTCCAACCAACTGATAACTGAGGCAATGGTTGTCATACAATGCAAGGCTGGTGAATTTGATGCTGCCTTGGCAGAATATAGTAATTCCAAGGGTTTCCATTCTTTTAGCAGAAGTTGTACTATGTATGAAATCTTGATTCAAGGCTGTGAGAAGAATGAACTCTTTGGTGAAGCTTCACAGGTTTATTCTGACATGAGATTCTATGGTATTGAACCATCAGAGCATCTTTACCAAATTATGGTGCTGATATATTGTAAAATGGGGTTCCCCGAGACAGCCCACCATTTGATTGAGCAGGCAGACATGAAAGGCATTCTTTTTGACAATATCTCCATATATGTTGATGTTATTGAAGTATATGGGAAATTGAAGCTATGGCAGAAAGCTGAAAGTTTGGTGGGAAGTCTTAAACAAAGATGTAAAACGGTGGATAGGAAGGTCTGGAATGCCTTGATACAAGCTTATGCCGCAAGTGGTTGCTATGAGCGGGCTAGAGTGATCTTTAACACAATGACAAGAGATGGTCCTTCCCCAACGGTAGAGTCTGTTAATGGTCTTTTGCGGGCTTTAATTGTTGATGGGAGGTTGGACGAACTTTATGTTCTTATCCAGGAGTTGCAAGATATGGGTTTTAAAATAAGCAAGAGTTCAATTCTGTTGATGCTTGAAGCATTTGCTCGAGCTGGTAACATATTTGAGGTGAAGAAAATATATCATGGAATGAAGGCTGCCGGTTATTTTCCTACAATGGATAGTTTCAGAATTATGGTCAAGTTATTGTGCAGGGGGAAACGAGTAAGGGATGTTGAAGCAATGGTTTCTGAGATGGAAGAGGCGGGTTTCAAGCCTGATCTTTCAATATGGAATTCCTTGCTTAAATTATATGCAGGAATTGAGGATTTCAAAAAGACAGTTAATGTATACCAGCGGATTAAAGAAGCTGAACTTCAACCAGATGAAGATACTTACAATACATTAATTATACTGTACTGCAGAGATCGTAGACCAGAAGAAGGTTTGACTTTGATGCATGAAATGAGAAGGCAGGGCCTGGAACCGAAGCTGAACACTTACAAAAGCTTAATTTCAGCATTTGGTAAGCAGAAGTTGTTGGATCAAGCTGAGGAACTTTTTGAAGAGTTAAGGTCTAATGGATGTAAATTGGATCGGTCATTTTATCATACGATGATGAAACTATATAGAAATTCTGGAAACCATGCCAAAGCTGAAATGCTGCTGTCTGTGATGAAGGAGGCTGGAATAGAACCCAACTTTGCCACAATGCACTTGCTTATGGTTTCTTATGGCAGCTCTGGACAGCCTCAGGAAGCAGAAAAAGTGCTTGACAATTTGAAAGTAACTGGTTTAGATCTGGATACATTACCCTATAGTTCAGTTATTGATGCTTATCTAAGGAATGGAGATTATAACACTGGAATTCAAAAGCTCAATGAGATGAAGAAAGGTGGTCTGGAGCCAGATCATAGAATATGGACATGCTTCATAAGGGCTGCAAGTTTGTCCCAGCAGACAAGTGAAGCCTTTGTTCTTCTAAATGCACTACGTGATGCTGGATTTGATCTCCCAATTAGGCTTTTGAAGGAAAAATCTGAGTCACTCATTCCAGATGTAGACCACTGTCTAGAGAAACTAGAACCCTTAGAAGACAATGCAGCCTTCAATTTTGTCAATGCTCTGGAGGACCTCTTGTGGGCATATGAACTCCGGGCTACTGCTTCATGGGTTTTCCAACTGGCAGTAAAGAGAGGCATCTATAACCATGATGTGTTCAGAGTCGCTGACAAGGACTGGGGTGCTGATTTTAGGAAGTTGTCAGCTGGTTCTGCTCTTGTTGGTCTTACTTTATGGCTTGATCAGATGCAGGATGCATCCTTGGAGGGTTATCCAGAGTCTCCCAAGTCAGTCGTTCTGATAACAGGGACATCTGAGTACAACATGGTTTCACTTAATAGTACATTAAAGGCATGCCTTTGGGAAATTGGTTCACCTTTTCTGCCGTGTAAAACACGAAGTGGTCTACTTGTAGCAAAAGCACACTCCCTCAGAATGTGGTTAAAGGACTCCCCGTTTTGTTTGGACCTTGAGTTGAAAGATGCCCCAGCACTCCCTGAATCAAACTCAATGCAGCTCATTGATGGATGCTTCTTAAGACGTGGTCTTGTTCCTGCATTTAAAGAAATAAATGAGAAGCTTGGATTAGTGAGGCCCAAGAAATTTGCAAGACTGGCTTTGCTATCTGATGAAAAAAGAGAAAGGGTTATTCAAGCTGATATTGAGGGGAGGAAAGAGAAGTTAGAAAAAATGAGAAAGAGGGGAATTCTTGACCCGAGTAGGGTGAGCAGGATTAGGAAGCTTAGAAAGAGGACATATATAAGACCGTCCATGTTATCAAACACCAAACAAATTGCATCAAAAAGAAGAGCTTTGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

1500

Amino Acids

169.46

Weight (kDa)

7.09

Isoelectric Point (pI)

43.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	237 - 365	7.3e-09	Fungal tetratrico peptide repeats
PPR_2	PF13041	268 - 312	2.2e-09	PPR repeat family
PPR_2	PF13041	301 - 352	2.9e-10	PPR repeat family
PPR_long	PF17177	324 - 463	1.7e-11	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	327 - 386	4.9e-15	Pentatricopeptide repeat domain
PPR_1	PF12854	335 - 367	8.2e-09	PPR repeat
PPR_2	PF13041	338 - 383	7.7e-15	PPR repeat family
PPR	PF01535	341 - 371	6.7e-07	PPR repeat
PPR_1	PF12854	370 - 401	1.6e-06	PPR repeat
PPR_2	PF13041	377 - 422	3.9e-12	PPR repeat family
PPR	PF01535	377 - 406	4.8e-08	PPR repeat
PPR_3	PF13812	397 - 457	2.4e-07	Pentatricopeptide repeat domain
PPR_3	PF13812	432 - 492	1.8e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	444 - 491	1.8e-14	PPR repeat family
PPR_long	PF17177	462 - 559	8.7e-08	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	478 - 506	8.2e-06	PPR repeat
PPR_2	PF13041	478 - 527	1e-12	PPR repeat family
PPR_3	PF13812	502 - 560	1.1e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	517 - 559	2.6e-07	PPR repeat family
PPR_2	PF13041	830 - 873	7.8e-06	PPR repeat family
TPR_24	PF23276	886 - 993	1.2e-07	Fungal tetratrico peptide repeats
PPR_long	PF17177	914 - 1009	1.8e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	956 - 1013	3.8e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	966 - 1010	2.9e-06	PPR repeat family
PPR_long	PF17177	987 - 1081	4.4e-08	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	1005 - 1050	2.4e-09	PPR repeat family
PPR	PF01535	1005 - 1034	1.8e-06	PPR repeat
PPR_3	PF13812	1025 - 1083	6.1e-08	Pentatricopeptide repeat domain
PPR	PF01535	1040 - 1069	7.6e-06	PPR repeat
TPR_24	PF23276	1120 - 1215	2.8e-06	Fungal tetratrico peptide repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18110
fragaria_vesca	FvH4_4g17300 FvH4_4g17300
malus_domestica	MD07G1304500.v1.1
prunus_persica	Prupe.6G174500_v2.0.a1
pyrus_communis	pycom07g27730
rosa_chinensis	RchiOBHm_Chr4g0421271
rosa_laevigata	RLG00000007705
rosa_multiflora	Rmu_sc0009290.1_g000019
rosa_roxburghii	Rroxscaffold_5G00363500
rosa_rugosa	Rorug04G0169600
rosa_samantha	Rh4AG230100 Rh4BG232900 Rh4CG244500 Rh4DG228700
rosa_wichuraiana	Rw4G020360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1040, 1134, 3477
Acc65I	GGTACC	1 cut(s)	958
AccB1I	GGYRCC	2 cut(s)	950, 958
AccB7I	CCANNNNNTGG	2 cut(s)	495, 2287
AccBSI	CCGCTC	2 cut(s)	889, 2536
AccI	GTMKAC	6 cut(s)	1086, 1996, 2970, 3052, 3681, 4087
AclWI	GGATC	2 cut(s)	3171, 3222
AdeI	CACNNNGTG	3 cut(s)	842, 3614, 4082
AfiI	CCNNNNNNNGG	9 cut(s)	307, 495, 791, 1545, 1765, 2287, 3062, 3760, 4402
AflII	CTTAAG	2 cut(s)	479, 4216
AflIII	ACRYGT	1 cut(s)	1359
AhlI	ACTAGT	1 cut(s)	185
AjiI	CACGTC	1 cut(s)	4223
AjnI	CCWGG	6 cut(s)	24, 744, 773, 1719, 2658, 3099
Alw21I	GWGCWC	1 cut(s)	1054
Alw26I	GTCTC	5 cut(s)	920, 1688, 1821, 2315, 3966
AlwI	GGATC	2 cut(s)	3171, 3222
AlwNI	CAGNNNCTG	1 cut(s)	3100
Ama87I	CYCGRG	3 cut(s)	2318, 2727, 4396
AoxI	GGCC	7 cut(s)	245, 437, 1010, 1375, 1494, 3097, 4274
ArsI	GACNNNNNNTTYG	2 cut(s)	1493, 1525
AseI	ATTAAT	1 cut(s)	3026
Asp718I	GGTACC	1 cut(s)	958
AspLEI	GCGC	1 cut(s)	681
AspS9I	GGNCC	9 cut(s)	438, 1375, 1686, 1948, 2573, 3097, 3751, 4147, 4275
AsuC2I	CCSGG	5 cut(s)	319, 1289, 1406, 1952, 3776
AvaI	CYCGRG	3 cut(s)	2318, 2727, 4396
AvaII	GGWCC	5 cut(s)	1686, 1948, 2573, 3751, 4147
AxyI	CCTNAGG	1 cut(s)	3372
BaeI	ACNNNNGTAYC	2 cut(s)	117, 150
BanI	GGYRCC	2 cut(s)	950, 958
BauI	CACGAG	1 cut(s)	1053
BbsI	GAAGAC	1 cut(s)	3720
Bbv12I	GWGCWC	1 cut(s)	1054
BbvCI	CCTCAGC	1 cut(s)	3171
BceAI	ACGGC	1 cut(s)	4051
BciT130I	CCWGG	6 cut(s)	26, 746, 775, 1721, 2660, 3101
BciVI	GTATCC	1 cut(s)	3418
BclI	TGATCA	3 cut(s)	1384, 1897, 3922
BcnI	CCSGG	5 cut(s)	319, 1289, 1406, 1952, 3776
BcoDI	GTCTC	5 cut(s)	920, 1688, 1821, 2315, 3966
BcuI	ACTAGT	1 cut(s)	185
BfaI	CTAG	6 cut(s)	147, 186, 1652, 2541, 3692, 3701
BfmI	CTRYAG	3 cut(s)	217, 3040, 3436
BfrI	CTTAAG	2 cut(s)	479, 4216
BfuI	GTATCC	1 cut(s)	3418
BglII	AGATCT	1 cut(s)	3418
BlpI	GCTNAGC	2 cut(s)	780, 1182
Bme18I	GGWCC	5 cut(s)	1686, 1948, 2573, 3751, 4147
BmeT110I	CYCGRG	3 cut(s)	2318, 2727, 4396
BmgBI	CACGTC	1 cut(s)	4223
BmgT120I	GGNCC	9 cut(s)	438, 1375, 1686, 1948, 2573, 3097, 3751, 4147, 4275
BmiI	GGNNCC	5 cut(s)	952, 960, 2315, 3105, 3525
BmrI	ACTGGG	3 cut(s)	415, 2040, 3868
BmuI	ACTGGG	3 cut(s)	415, 2040, 3868
BoxI	GACNNNNGTC	1 cut(s)	3687
BpiI	GAAGAC	1 cut(s)	3720
BpmI	CTGGAG	2 cut(s)	3542, 3767
Bpu10I	CCTNAGC	1 cut(s)	3171
Bpu1102I	GCTNAGC	2 cut(s)	780, 1182
BpuEI	CTTGAG	3 cut(s)	114, 1587, 4172
BpuMI	CCSGG	5 cut(s)	319, 1289, 1406, 1952, 3776
BsaAI	YACGTR	2 cut(s)	1446, 3614
BsaBI	GATNNNNATC	1 cut(s)	3456
BsaJI	CCNNGG	9 cut(s)	24, 450, 489, 774, 954, 1468, 2115, 2136, 3942
BsaXI	ACNNNNNCTCC	4 cut(s)	988, 1018, 2363, 2393
Bsc4I	CCNNNNNNNGG	9 cut(s)	307, 495, 791, 1545, 1765, 2287, 3062, 3760, 4402
Bse118I	RCCGGY	1 cut(s)	2780
Bse21I	CCTNAGG	1 cut(s)	3372
Bse3DI	GCAATG	3 cut(s)	1713, 2079, 2868
Bse8I	GATNNNNATC	1 cut(s)	3456
BseBI	CCWGG	6 cut(s)	26, 746, 775, 1721, 2660, 3101
BseDI	CCNNGG	9 cut(s)	24, 450, 489, 774, 954, 1468, 2115, 2136, 3942
BseGI	GGATG	7 cut(s)	319, 577, 2857, 3209, 3938, 3940, 4214
BseJI	GATNNNNATC	1 cut(s)	3456
BseLI	CCNNNNNNNGG	9 cut(s)	307, 495, 791, 1545, 1765, 2287, 3062, 3760, 4402
BseMI	GCAATG	3 cut(s)	1713, 2079, 2868
BseRI	GAGGAG	3 cut(s)	273, 1009, 1085
BseYI	CCCAGC	3 cut(s)	440, 3573, 4168
BsgI	GTGCAG	1 cut(s)	2851
BshFI	GGCC	7 cut(s)	247, 439, 1012, 1377, 1496, 3099, 4276
BshNI	GGYRCC	2 cut(s)	950, 958
BsiHKAI	GWGCWC	1 cut(s)	1054
BsiHKCI	CYCGRG	3 cut(s)	2318, 2727, 4396
BsiSI	CCGG	6 cut(s)	318, 1288, 1405, 1951, 2781, 3775
BslFI	GGGAC	5 cut(s)	7, 40, 1421, 3556, 4003
BslI	CCNNNNNNNGG	9 cut(s)	307, 495, 791, 1545, 1765, 2287, 3062, 3760, 4402
BsmAI	GTCTC	5 cut(s)	920, 1688, 1821, 2315, 3966
BsmFI	GGGAC	5 cut(s)	7, 40, 1421, 3556, 4003
BsmI	GAATGC	6 cut(s)	703, 711, 1858, 1895, 2361, 2500
BsnI	GGCC	7 cut(s)	247, 439, 1012, 1377, 1496, 3099, 4276
BsoBI	CYCGRG	3 cut(s)	2318, 2727, 4396
Bsp1286I	GDGCHC	1 cut(s)	1054
Bsp1407I	TGTACA	1 cut(s)	810
Bsp1720I	GCTNAGC	2 cut(s)	780, 1182
Bsp19I	CCATGG	1 cut(s)	954
BspANI	GGCC	7 cut(s)	247, 439, 1012, 1377, 1496, 3099, 4276
BspLI	GGNNCC	5 cut(s)	952, 960, 2315, 3105, 3525
BspMAI	CTGCAG	1 cut(s)	3044
BspPI	GGATC	2 cut(s)	3171, 3222
BspQI	GCTCTTC	2 cut(s)	629, 4483
BspT107I	GGYRCC	2 cut(s)	950, 958
BspTI	CTTAAG	2 cut(s)	479, 4216
BsrBI	CCGCTC	2 cut(s)	889, 2536
BsrDI	GCAATG	3 cut(s)	1713, 2079, 2868
BsrFI	RCCGGY	1 cut(s)	2780
BsrGI	TGTACA	1 cut(s)	810
BssAI	RCCGGY	1 cut(s)	2780
BssECI	CCNNGG	9 cut(s)	24, 450, 489, 774, 954, 1468, 2115, 2136, 3942
BssNAI	GTATAC	2 cut(s)	1087, 2971
BssSI	CACGAG	1 cut(s)	1053
BssT1I	CCWWGG	7 cut(s)	450, 489, 954, 1468, 2115, 2136, 3942
Bst1107I	GTATAC	2 cut(s)	1087, 2971
Bst2BI	CACGAG	1 cut(s)	1053
Bst2UI	CCWGG	6 cut(s)	26, 746, 775, 1721, 2660, 3101
Bst6I	CTCTTC	7 cut(s)	629, 1296, 1548, 1873, 2874, 3180, 4483
BstAFI	CTTAAG	2 cut(s)	479, 4216
BstAPI	GCANNNNNTGC	1 cut(s)	868
BstAUI	TGTACA	1 cut(s)	810
BstBAI	YACGTR	2 cut(s)	1446, 3614
BstDSI	CCRYGG	1 cut(s)	954
BstENI	CCTNNNNNAGG	1 cut(s)	1763
BstF5I	GGATG	7 cut(s)	319, 577, 2857, 3209, 3938, 3940, 4214
BstHHI	GCGC	1 cut(s)	681
BstMAI	GTCTC	5 cut(s)	920, 1688, 1821, 2315, 3966
BstMWI	GCNNNNNNNGC	8 cut(s)	676, 698, 868, 1378, 2117, 2516, 3893, 4295
BstNI	CCWGG	6 cut(s)	26, 746, 775, 1721, 2660, 3101
BstNSI	RCATGY	5 cut(s)	1363, 2013, 2042, 3549, 4038
BstPAI	GACNNNNGTC	1 cut(s)	3687
BstSFI	CTRYAG	3 cut(s)	217, 3040, 3436
BstSNI	TACGTA	1 cut(s)	1446
BstV2I	GAAGAC	1 cut(s)	3720
BstX2I	RGATCY	1 cut(s)	3418
BstXI	CCANNNNNNTGG	1 cut(s)	1364
BstYI	RGATCY	1 cut(s)	3418
BstZ17I	GTATAC	2 cut(s)	1087, 2971
Bsu36I	CCTNAGG	1 cut(s)	3372
BsuI	GTATCC	1 cut(s)	3418
BsuRI	GGCC	7 cut(s)	247, 439, 1012, 1377, 1496, 3099, 4276
BtgI	CCRYGG	1 cut(s)	954
BtrI	CACGTC	1 cut(s)	4223
BtsCI	GGATG	7 cut(s)	319, 577, 2857, 3209, 3938, 3940, 4214
BtsI	GCAGTG	1 cut(s)	1236
BtsIMutI	CAGTG	8 cut(s)	597, 682, 1236, 1449, 1531, 1939, 3480, 3685
CaiI	CAGNNNCTG	1 cut(s)	3100
CfoI	GCGC	1 cut(s)	681
Cfr10I	RCCGGY	1 cut(s)	2780
Cfr13I	GGNCC	9 cut(s)	438, 1375, 1686, 1948, 2573, 3097, 3751, 4147, 4275
DraI	TTTAAA	2 cut(s)	2683, 4243
DraIII	CACNNNGTG	3 cut(s)	842, 3614, 4082
Eam1104I	CTCTTC	7 cut(s)	629, 1296, 1548, 1873, 2874, 3180, 4483
EarI	CTCTTC	7 cut(s)	629, 1296, 1548, 1873, 2874, 3180, 4483
Eco105I	TACGTA	1 cut(s)	1446
Eco130I	CCWWGG	7 cut(s)	450, 489, 954, 1468, 2115, 2136, 3942
Eco32I	GATATC	1 cut(s)	1675
Eco47I	GGWCC	5 cut(s)	1686, 1948, 2573, 3751, 4147
Eco81I	CCTNAGG	1 cut(s)	3372
Eco88I	CYCGRG	3 cut(s)	2318, 2727, 4396
EcoNI	CCTNNNNNAGG	1 cut(s)	1763
EcoO109I	RGGNCCY	2 cut(s)	3097, 3751
EcoRI	GAATTC	4 cut(s)	1428, 2914, 3486, 4386
EcoRII	CCWGG	6 cut(s)	24, 744, 773, 1719, 2658, 3099
EcoRV	GATATC	1 cut(s)	1675
EcoT14I	CCWWGG	7 cut(s)	450, 489, 954, 1468, 2115, 2136, 3942
EcoT22I	ATGCAT	2 cut(s)	3081, 3940
ErhI	CCWWGG	7 cut(s)	450, 489, 954, 1468, 2115, 2136, 3942
FalI	AAGNNNNNCTT	7 cut(s)	2349, 2381, 2979, 3011, 4282, 4314, 4477
FaqI	GGGAC	5 cut(s)	7, 40, 1421, 3556, 4003
FauI	CCCGC	5 cut(s)	882, 1770, 2529, 2604, 2878
FauNDI	CATATG	1 cut(s)	3766
FbaI	TGATCA	3 cut(s)	1384, 1897, 3922
FblI	GTMKAC	6 cut(s)	1086, 1996, 2970, 3052, 3681, 4087
FokI	GGATG	7 cut(s)	326, 584, 2864, 3216, 3925, 3947, 4221
FspBI	CTAG	6 cut(s)	147, 186, 1652, 2541, 3692, 3701
GlaI	GCGC	1 cut(s)	680
GsaI	CCCAGC	3 cut(s)	444, 3577, 4172
GsuI	CTGGAG	2 cut(s)	3542, 3767
HaeIII	GGCC	7 cut(s)	247, 439, 1012, 1377, 1496, 3099, 4276
HapII	CCGG	6 cut(s)	318, 1288, 1405, 1951, 2781, 3775
HhaI	GCGC	1 cut(s)	681
Hin6I	GCGC	1 cut(s)	679
HinP1I	GCGC	1 cut(s)	679
HincII	GTYRAC	1 cut(s)	1115
HindII	GTYRAC	1 cut(s)	1115
HindIII	AAGCTT	6 cut(s)	750, 2220, 2508, 3127, 4259, 4421
HpaII	CCGG	6 cut(s)	318, 1288, 1405, 1951, 2781, 3775
HpyCH4IV	ACGT	3 cut(s)	1445, 3613, 4222
HpyF10VI	GCNNNNNNNGC	8 cut(s)	676, 698, 868, 1378, 2117, 2516, 3893, 4295
HpySE526I	ACGT	3 cut(s)	1445, 3613, 4222
HspAI	GCGC	1 cut(s)	679
KpnI	GGTACC	1 cut(s)	962
Ksp22I	TGATCA	3 cut(s)	1384, 1897, 3922
LguI	GCTCTTC	2 cut(s)	629, 4483
LmnI	GCTCC	2 cut(s)	2047, 3523
MaeI	CTAG	6 cut(s)	147, 186, 1652, 2541, 3692, 3701
MaeII	ACGT	3 cut(s)	1445, 3613, 4222
MaeIII	GTNAC	6 cut(s)	179, 1231, 1441, 2735, 3406, 3663
MbiI	CCGCTC	2 cut(s)	889, 2536
MflI	RGATCY	1 cut(s)	3418
MhlI	GDGCHC	1 cut(s)	1054
MlyI	GAGTC	9 cut(s)	62, 516, 922, 1214, 2600, 3671, 3852, 3968, 4124
MmeI	TCCRAC	7 cut(s)	633, 1500, 1713, 2076, 2616, 3141, 3823
Mph1103I	ATGCAT	2 cut(s)	3081, 3940
MslI	CAYNNNNRTG	4 cut(s)	687, 827, 1362, 1415
MspA1I	CMGCKG	2 cut(s)	2977, 3887
MspCI	CTTAAG	2 cut(s)	479, 4216
MspI	CCGG	6 cut(s)	318, 1288, 1405, 1951, 2781, 3775
Mva1269I	GAATGC	6 cut(s)	703, 711, 1858, 1895, 2361, 2500
MvaI	CCWGG	6 cut(s)	26, 746, 775, 1721, 2660, 3101
MwoI	GCNNNNNNNGC	8 cut(s)	676, 698, 868, 1378, 2117, 2516, 3893, 4295
NciI	CCSGG	5 cut(s)	319, 1289, 1406, 1952, 3776
NcoI	CCATGG	1 cut(s)	954
NdeI	CATATG	1 cut(s)	3766
NlaIV	GGNNCC	5 cut(s)	952, 960, 2315, 3105, 3525
NmuCI	GTSAC	2 cut(s)	1231, 3663
NsiI	ATGCAT	2 cut(s)	3081, 3940
NspI	RCATGY	5 cut(s)	1363, 2013, 2042, 3549, 4038
PaeI	GCATGC	1 cut(s)	4038
PaeR7I	CTCGAG	1 cut(s)	2727
PciI	ACATGT	1 cut(s)	1359
PciSI	GCTCTTC	2 cut(s)	629, 4483
PctI	GAATGC	6 cut(s)	703, 711, 1858, 1895, 2361, 2500
PfeI	GAWTC	7 cut(s)	341, 347, 1058, 1463, 2185, 2247, 4181
PflFI	GACNNNGTC	1 cut(s)	4224
PflMI	CCANNNNNTGG	2 cut(s)	495, 2287
PfoI	TCCNGGA	2 cut(s)	1287, 2658
PleI	GAGTC	9 cut(s)	61, 515, 921, 1213, 2599, 3670, 3851, 3967, 4124
PpsI	GAGTC	9 cut(s)	61, 515, 921, 1213, 2599, 3670, 3851, 3967, 4124
Ppu21I	YACGTR	2 cut(s)	1446, 3614
PpuMI	RGGWCCY	1 cut(s)	3751
PscI	ACATGT	1 cut(s)	1359
PshAI	GACNNNNGTC	1 cut(s)	3687
PshBI	ATTAAT	1 cut(s)	3026
PsiI	TTATAA	3 cut(s)	1040, 1134, 3477
Psp5II	RGGWCCY	1 cut(s)	3751
Psp6I	CCWGG	6 cut(s)	24, 744, 773, 1719, 2658, 3099
PspFI	CCCAGC	3 cut(s)	440, 3573, 4168
PspGI	CCWGG	6 cut(s)	24, 744, 773, 1719, 2658, 3099
PspN4I	GGNNCC	5 cut(s)	952, 960, 2315, 3105, 3525
PspPI	GGNCC	9 cut(s)	438, 1375, 1686, 1948, 2573, 3097, 3751, 4147, 4275
PspPPI	RGGWCCY	1 cut(s)	3751
PspXI	VCTCGAGB	1 cut(s)	2727
PstI	CTGCAG	1 cut(s)	3044
PstNI	CAGNNNCTG	1 cut(s)	3100
PsuI	RGATCY	1 cut(s)	3418
PsyI	GACNNNGTC	1 cut(s)	4224
PvuII	CAGCTG	1 cut(s)	3887
RseI	CAYNNNNRTG	4 cut(s)	687, 827, 1362, 1415
SapI	GCTCTTC	2 cut(s)	629, 4483
Sau96I	GGNCC	9 cut(s)	438, 1375, 1686, 1948, 2573, 3097, 3751, 4147, 4275
SchI	GAGTC	9 cut(s)	62, 516, 922, 1214, 2600, 3671, 3852, 3968, 4124
SduI	GDGCHC	1 cut(s)	1054
SfcI	CTRYAG	3 cut(s)	217, 3040, 3436
Sfr274I	CTCGAG	1 cut(s)	2727
SinI	GGWCC	5 cut(s)	1686, 1948, 2573, 3751, 4147
SlaI	CTCGAG	1 cut(s)	2727
SmiMI	CAYNNNNRTG	4 cut(s)	687, 827, 1362, 1415
SmlI	CTYRAG	6 cut(s)	129, 479, 1602, 2727, 4151, 4216
SmoI	CTYRAG	6 cut(s)	129, 479, 1602, 2727, 4151, 4216
SnaBI	TACGTA	1 cut(s)	1446
SpeI	ACTAGT	1 cut(s)	185
SphI	GCATGC	1 cut(s)	4038
SspMI	CTAG	6 cut(s)	147, 186, 1652, 2541, 3692, 3701
StyI	CCWWGG	7 cut(s)	450, 489, 954, 1468, 2115, 2136, 3942
TaiI	ACGT	3 cut(s)	1448, 3616, 4225
TaqI	TCGA	4 cut(s)	326, 1172, 1426, 2728
TaqII	GACCGA	1 cut(s)	3207
TatI	WGTACW	6 cut(s)	583, 810, 2165, 3036, 3999, 4022
TauI	GCSGC	3 cut(s)	1047, 1499, 2519
TfiI	GAWTC	7 cut(s)	341, 347, 1058, 1463, 2185, 2247, 4181
TscAI	CASTG	8 cut(s)	604, 689, 1236, 1456, 1531, 1939, 3487, 3692
TseFI	GTSAC	2 cut(s)	1231, 3663
Tsp45I	GTSAC	2 cut(s)	1231, 3663
TspRI	CASTG	8 cut(s)	604, 689, 1236, 1456, 1531, 1939, 3487, 3692
Tth111I	GACNNNGTC	1 cut(s)	4224
Van91I	CCANNNNNTGG	2 cut(s)	495, 2287
Vha464I	CTTAAG	2 cut(s)	479, 4216
VpaK11BI	GGWCC	5 cut(s)	1686, 1948, 2573, 3751, 4147
VspI	ATTAAT	1 cut(s)	3026
XagI	CCTNNNNNAGG	1 cut(s)	1763
XbaI	TCTAGA	1 cut(s)	3691
XceI	RCATGY	5 cut(s)	1363, 2013, 2042, 3549, 4038
XhoI	CTCGAG	1 cut(s)	2727
XmiI	GTMKAC	6 cut(s)	1086, 1996, 2970, 3052, 3681, 4087
XspI	CTAG	6 cut(s)	147, 186, 1652, 2541, 3692, 3701
Zsp2I	ATGCAT	2 cut(s)	3081, 3940

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.