AT3G18140

Protein LST8 homolog

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
6212585 .. 6214804
2220 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G18140.1

Sequence Viewer

Length: 918 bp
ATGAGTCAGCCTTCTGTGATTCTTGCTACGGCTAGCTATGATCACACCATCCGATTCTGGGAAGCCGAAACTGGTCGCTGTTACCGTACCATTCAGTATCCTGATTCGCATGTAAATAGGCTTGAGATAACCCCAGATAAGCATTATCTAGCTGCAGCTTGCAATCCTCATATTCGACTCTTTGATGTCAATTCCAATAGTCCTCAACCTGTGATGACTTACGATTCACACACCAACAATGTTATGGCAGTAGGATTTCAATGTGATGCAAAATGGATGTATTCAGGATCAGAAGATGGCACAGTTAAGATCTGGGACTTAAGGGCTCCGGGTTGCCAAAAGGAGTATGAAAGTGTTGCAGCGGTTAATACAGTTGTTTTACACCCAAATCAGACTGAATTGATATCTGGAGACCAAAATGGAAATATACGTGTATGGGATCTCAGAGCAAATTCGTGTAGCTGTGAACTGGTACCAGAAGTTGATACAGCTGTACGGTCTTTAACTGTTATGTGGGATGGGACAATGGTAGTCGCTGCTAACAACCGTGGAACATGTTATGTATGGCGCTTGTTGCGTGGAAAACAGACAATGACAGAGTTTGAGCCCCTTCATAAGCTGCAAGCTCATAATGGCCACATCCTTAAATGTCTCCTCTCTCCTGCAAACAAATATCTAGCGACTGCATCATCTGATAAAACTGTCAAAATATGGAACGTCGATGGTTTTAAACTAGAGAAAGTTTTAACAGGACATCAAAGATGGGTTTGGGACTGCGTCTTCTCAGTGGATGGAGAATTTCTTGTAACAGCATCATCGGACATGACGGCTAGATTGTGGTCGATGCCAGCAGGCAAAGAAGTGAAAGTGTACCAAGGTCATCACAAAGCCACTGTGTGCTGTGCACTTCACGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Pfam Domains
Protein Families

Protein Analysis

305

Amino Acids

34.31

Weight (kDa)

6.49

Isoelectric Point (pI)

42.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR5 PF25175 3 - 196 3.1e-29 WDR5 beta-propeller domain
Beta-prop_WDR3_2nd PF25172 3 - 109 2.2e-11 WDR3 second beta-propeller domain
EIF3I PF24805 4 - 109 3.2e-07 EIF3I
Beta-prop_WDR3_1st PF25173 5 - 62 1e-07 WDR3 first beta-propeller domain
WD40_CDC20-Fz PF24807 6 - 238 7.2e-26 CDC20/Fizzy WD40 domain
Beta-prop_EML_2 PF23414 7 - 117 6.8e-10 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_THOC3 PF25174 7 - 63 5.7e-08 THOC3 beta-propeller domain
WD40_MABP1-WDR62_2nd PF24782 7 - 107 1.5e-07 MABP1/WDR62 second WD40 domain
Beta-prop_WDR36-Utp21_2nd PF25168 7 - 108 1.6e-12 WDR36/Utp21 second beta-propeller domain
WD40_WDHD1_1st PF24817 8 - 125 6e-14 WDHD1 first WD40 domain
Beta-prop_WDR90_POC16_2nd PF23393 8 - 100 6.4e-06 WDR90/POC16, second beta-propeller
Beta-prop_WDR36-Utp21_1st PF25171 12 - 119 7e-08 WDR36/Utp21 first beta-propeller
WDR55 PF24796 35 - 196 1.1e-16 WDR55
Beta-prop_THOC3 PF25174 38 - 303 8.4e-43 THOC3 beta-propeller domain
Beta-prop_WDR3_1st PF25173 57 - 191 7.4e-17 WDR3 first beta-propeller domain
WD40_Prp19 PF24814 60 - 239 3.9e-22 Prp19 WD40 domain
WD40_Gbeta PF25391 69 - 195 9.9e-12 G protein beta WD-40 repeat protein
WD40 PF00400 69 - 106 8.8e-10 WD domain, G-beta repeat
Beta-prop_WDR3_2nd PF25172 81 - 297 4.3e-24 WDR3 second beta-propeller domain
Beta-prop_WDR90_POC16_2nd PF23393 96 - 191 7.8e-08 WDR90/POC16, second beta-propeller
Beta-prop_WDR36-Utp21_2nd PF25168 120 - 241 4.8e-06 WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_1st PF25173 120 - 281 1.6e-25 WDR3 first beta-propeller domain
Beta-prop_EML PF23409 124 - 212 2e-07 Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_EML_2 PF23414 126 - 290 2e-21 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_TEP1_2nd PF25047 131 - 299 4.3e-20 TEP-1 second beta-propeller
Beta-prop_WDR36-Utp21_1st PF25171 135 - 241 2.8e-06 WDR36/Utp21 first beta-propeller
WD40_WDHD1_1st PF24817 162 - 248 2.3e-07 WDHD1 first WD40 domain
WD40_Gbeta PF25391 165 - 300 5.6e-11 G protein beta WD-40 repeat protein
WD40_MABP1-WDR62_2nd PF24782 175 - 281 1.6e-09 MABP1/WDR62 second WD40 domain
WD40 PF00400 202 - 239 5.4e-08 WD domain, G-beta repeat
Beta-prop_WDR5 PF25175 207 - 302 5.6e-23 WDR5 beta-propeller domain
WD40_Prp19 PF24814 209 - 304 1.4e-12 Prp19 WD40 domain
Beta-prop_CAF1B_HIR1 PF24105 243 - 296 7.1e-06 CAF1B/HIR1 beta-propeller domain
WD40 PF00400 244 - 281 2.5e-09 WD domain, G-beta repeat
Beta-prop_WDR36-Utp21_2nd PF25168 246 - 295 5.9e-07 WDR36/Utp21 second beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 472
AccB1I GGYRCC 1 cut(s) 472
AciI CCGC 1 cut(s) 362
AclWI GGATC 2 cut(s) 295, 447
AcoI YGGCCR 1 cut(s) 634
AcsI RAATTY 2 cut(s) 451, 797
AdeI CACNNNGTG 1 cut(s) 897
AfaI GTAC 4 cut(s) 88, 474, 495, 872
AfiI CCNNNNNNNGG 1 cut(s) 58
AflII CTTAAG 1 cut(s) 319
AflIII ACRYGT 2 cut(s) 430, 554
AgsI TTSAA 1 cut(s) 260
AluBI AGCT 7 cut(s) 36, 152, 158, 462, 491, 619, 626
AluI AGCT 7 cut(s) 36, 152, 158, 462, 491, 619, 626
Alw21I GWGCWC 1 cut(s) 907
Alw26I GTCTC 2 cut(s) 405, 656
Alw44I GTGCAC 1 cut(s) 903
AlwI GGATC 2 cut(s) 295, 447
AoxI GGCC 1 cut(s) 634
ApaLI GTGCAC 1 cut(s) 903
ApeKI GCWGC 5 cut(s) 152, 155, 359, 536, 619
ApoI RAATTY 2 cut(s) 451, 797
Asp718I GGTACC 1 cut(s) 472
AspLEI GCGC 1 cut(s) 570
AsuC2I CCSGG 1 cut(s) 330
AsuNHI GCTAGC 1 cut(s) 32
BaeGI GKGCMC 1 cut(s) 907
BaeI ACNNNNGTAYC 2 cut(s) 477, 510
BalI TGGCCA 1 cut(s) 636
BanI GGYRCC 1 cut(s) 472
BanII GRGCYC 2 cut(s) 328, 609
BbsI GAAGAC 1 cut(s) 772
Bbv12I GWGCWC 1 cut(s) 907
BbvI GCAGC 5 cut(s) 139, 167, 371, 523, 606
BccI CCATC 6 cut(s) 56, 290, 512, 716, 756, 785
BceAI ACGGC 2 cut(s) 45, 843
BciVI GTATCC 1 cut(s) 108
BclI TGATCA 1 cut(s) 40
BcnI CCSGG 1 cut(s) 330
BcoDI GTCTC 2 cut(s) 405, 656
BfaI CTAG 5 cut(s) 33, 149, 677, 734, 831
BfmI CTRYAG 1 cut(s) 153
BfoI RGCGCY 1 cut(s) 571
BfrI CTTAAG 1 cut(s) 319
BfuI GTATCC 1 cut(s) 108
BglII AGATCT 1 cut(s) 309
BisI GCNGC 5 cut(s) 153, 156, 360, 537, 620
BlsI GCNGC 5 cut(s) 154, 157, 361, 538, 621
Bme1390I CCNGG 1 cut(s) 330
BmiI GGNNCC 2 cut(s) 327, 474
BmrFI CCNGG 1 cut(s) 330
BmsI GCATC 4 cut(s) 256, 695, 821, 834
BmtI GCTAGC 1 cut(s) 36
BpiI GAAGAC 1 cut(s) 772
BpmI CTGGAG 1 cut(s) 429
BpuEI CTTGAG 1 cut(s) 143
BpuMI CCSGG 1 cut(s) 330
BsaAI YACGTR 1 cut(s) 431
BsaI GGTCTC 1 cut(s) 405
BsaJI CCNNGG 2 cut(s) 547, 874
Bsc4I CCNNNNNNNGG 1 cut(s) 58
Bse1I ACTGG 2 cut(s) 76, 474
BseDI CCNNGG 2 cut(s) 547, 874
BseGI GGATG 5 cut(s) 48, 282, 523, 639, 796
BseLI CCNNNNNNNGG 1 cut(s) 58
BseMII CTCAG 2 cut(s) 457, 798
BseNI ACTGG 2 cut(s) 76, 474
BseRI GAGGAG 1 cut(s) 644
BseSI GKGCMC 1 cut(s) 907
BseXI GCAGC 5 cut(s) 139, 167, 371, 523, 606
BshFI GGCC 1 cut(s) 636
BshNI GGYRCC 1 cut(s) 472
BsiHKAI GWGCWC 1 cut(s) 907
BsiSI CCGG 1 cut(s) 329
BslFI GGGAC 3 cut(s) 329, 535, 785
BslI CCNNNNNNNGG 1 cut(s) 58
BsmAI GTCTC 2 cut(s) 405, 656
BsmFI GGGAC 3 cut(s) 329, 535, 785
BsnI GGCC 1 cut(s) 636
Bso31I GGTCTC 1 cut(s) 405
Bsp1286I GDGCHC 3 cut(s) 328, 609, 907
Bsp143I GATC 4 cut(s) 40, 287, 309, 439
BspACI CCGC 1 cut(s) 362
BspANI GGCC 1 cut(s) 636
BspCNI CTCAG 2 cut(s) 456, 797
BspLI GGNNCC 2 cut(s) 327, 474
BspMAI CTGCAG 1 cut(s) 157
BspOI GCTAGC 1 cut(s) 36
BspPI GGATC 2 cut(s) 295, 447
BspT107I GGYRCC 1 cut(s) 472
BspTI CTTAAG 1 cut(s) 319
BspTNI GGTCTC 1 cut(s) 405
BsrI ACTGG 2 cut(s) 76, 474
BssECI CCNNGG 2 cut(s) 547, 874
BssMI GATC 4 cut(s) 40, 287, 309, 439
BssT1I CCWWGG 1 cut(s) 874
Bst4CI ACNGT 8 cut(s) 86, 304, 373, 498, 508, 548, 703, 895
BstAFI CTTAAG 1 cut(s) 319
BstBAI YACGTR 1 cut(s) 431
BstC8I GCNNGC 5 cut(s) 34, 160, 624, 849, 853
BstDEI CTNAG 2 cut(s) 443, 784
BstDSI CCRYGG 1 cut(s) 547
BstF5I GGATG 5 cut(s) 48, 282, 523, 639, 796
BstH2I RGCGCY 1 cut(s) 571
BstHHI GCGC 1 cut(s) 570
BstKTI GATC 4 cut(s) 43, 290, 312, 442
BstMAI GTCTC 2 cut(s) 405, 656
BstMBI GATC 4 cut(s) 40, 287, 309, 439
BstMWI GCNNNNNNNGC 1 cut(s) 574
BstNSI RCATGY 2 cut(s) 113, 558
BstSCI CCNGG 1 cut(s) 328
BstSFI CTRYAG 1 cut(s) 153
BstSLI GKGCMC 1 cut(s) 907
BstV1I GCAGC 5 cut(s) 139, 167, 371, 523, 606
BstV2I GAAGAC 1 cut(s) 772
BstX2I RGATCY 2 cut(s) 309, 439
BstYI RGATCY 2 cut(s) 309, 439
BsuI GTATCC 1 cut(s) 108
BsuRI GGCC 1 cut(s) 636
BtgI CCRYGG 1 cut(s) 547
BtsCI GGATG 5 cut(s) 48, 282, 523, 639, 796
BtsIMutI CAGTG 2 cut(s) 792, 891
Cac8I GCNNGC 5 cut(s) 34, 160, 624, 849, 853
CfoI GCGC 1 cut(s) 570
CseI GACGC 1 cut(s) 766
Csp6I GTAC 4 cut(s) 87, 473, 494, 871
CviAII CATG 3 cut(s) 110, 555, 823
CviQI GTAC 4 cut(s) 87, 473, 494, 871
DdeI CTNAG 2 cut(s) 443, 784
DpnI GATC 4 cut(s) 42, 289, 311, 441
DpnII GATC 4 cut(s) 40, 287, 309, 439
DraI TTTAAA 1 cut(s) 730
DraIII CACNNNGTG 1 cut(s) 897
EaeI YGGCCR 1 cut(s) 634
Eco130I CCWWGG 1 cut(s) 874
Eco24I GRGCYC 2 cut(s) 328, 609
Eco31I GGTCTC 1 cut(s) 405
Eco32I GATATC 1 cut(s) 405
EcoRV GATATC 1 cut(s) 405
EcoT14I CCWWGG 1 cut(s) 874
EcoT38I GRGCYC 2 cut(s) 328, 609
ErhI CCWWGG 1 cut(s) 874
FaeI CATG 3 cut(s) 113, 558, 826
FaqI GGGAC 3 cut(s) 329, 535, 785
FatI CATG 3 cut(s) 109, 554, 822
FbaI TGATCA 1 cut(s) 40
Fnu4HI GCNGC 5 cut(s) 153, 156, 360, 537, 620
FokI GGATG 5 cut(s) 35, 289, 530, 626, 803
FriOI GRGCYC 2 cut(s) 328, 609
Fsp4HI GCNGC 5 cut(s) 153, 156, 360, 537, 620
FspBI CTAG 5 cut(s) 33, 149, 677, 734, 831
GlaI GCGC 1 cut(s) 569
GluI GCNGC 5 cut(s) 153, 156, 360, 537, 620
GsuI CTGGAG 1 cut(s) 429
HaeII RGCGCY 1 cut(s) 571
HaeIII GGCC 1 cut(s) 636
HapII CCGG 1 cut(s) 329
HgaI GACGC 1 cut(s) 766
HhaI GCGC 1 cut(s) 570
Hin1II CATG 3 cut(s) 113, 558, 826
Hin6I GCGC 1 cut(s) 568
HinP1I GCGC 1 cut(s) 568
HinfI GANTC 6 cut(s) 4, 19, 54, 104, 177, 224
HpaII CCGG 1 cut(s) 329
Hpy166II GTNNAC 3 cut(s) 467, 871, 905
Hpy188I TCNGA 6 cut(s) 53, 292, 393, 446, 694, 820
Hpy188III TCNNGA 4 cut(s) 101, 285, 408, 911
Hpy8I GTNNAC 3 cut(s) 467, 871, 905
Hpy99I CGWCG 1 cut(s) 722
HpyAV CCTTC 2 cut(s) 21, 620
HpyCH4III ACNGT 8 cut(s) 86, 304, 373, 498, 508, 548, 703, 895
HpyCH4IV ACGT 2 cut(s) 430, 717
HpyCH4V TGCA 8 cut(s) 155, 162, 269, 359, 622, 665, 686, 905
HpyF10VI GCNNNNNNNGC 1 cut(s) 574
HpyF3I CTNAG 2 cut(s) 443, 784
HpySE526I ACGT 2 cut(s) 430, 717
Hsp92II CATG 3 cut(s) 113, 558, 826
HspAI GCGC 1 cut(s) 568
KpnI GGTACC 1 cut(s) 476
Ksp22I TGATCA 1 cut(s) 40
Kzo9I GATC 4 cut(s) 40, 287, 309, 439
LmnI GCTCC 1 cut(s) 331
Lsp1109I GCAGC 5 cut(s) 139, 167, 371, 523, 606
LweI GCATC 4 cut(s) 256, 695, 821, 834
MaeI CTAG 5 cut(s) 33, 149, 677, 734, 831
MaeII ACGT 2 cut(s) 430, 717
MaeIII GTNAC 2 cut(s) 80, 805
MalI GATC 4 cut(s) 42, 289, 311, 441
MboI GATC 4 cut(s) 40, 287, 309, 439
MboII GAAGA 2 cut(s) 305, 772
MflI RGATCY 2 cut(s) 309, 439
MhlI GDGCHC 3 cut(s) 328, 609, 907
MlsI TGGCCA 1 cut(s) 636
MluCI AATT 4 cut(s) 190, 398, 451, 797
MluNI TGGCCA 1 cut(s) 636
MlyI GAGTC 2 cut(s) 13, 171
MnlI CCTC 3 cut(s) 177, 213, 665
Mox20I TGGCCA 1 cut(s) 636
MscI TGGCCA 1 cut(s) 636
MseI TTAA 8 cut(s) 306, 320, 366, 503, 645, 729, 746, 916
Msp20I TGGCCA 1 cut(s) 636
MspA1I CMGCKG 2 cut(s) 362, 491
MspCI CTTAAG 1 cut(s) 319
MspI CCGG 1 cut(s) 329
MspR9I CCNGG 1 cut(s) 330
MwoI GCNNNNNNNGC 1 cut(s) 574
NciI CCSGG 1 cut(s) 330
NdeII GATC 4 cut(s) 40, 287, 309, 439
NheI GCTAGC 1 cut(s) 32
NlaIII CATG 3 cut(s) 113, 558, 826
NlaIV GGNNCC 2 cut(s) 327, 474
NspI RCATGY 2 cut(s) 113, 558
PciI ACATGT 1 cut(s) 554
PcsI WCGNNNNNNNCGW 1 cut(s) 82
PfeI GAWTC 4 cut(s) 19, 54, 104, 224
PflFI GACNNNGTC 1 cut(s) 776
PkrI GCNGC 5 cut(s) 154, 157, 361, 538, 621
PleI GAGTC 2 cut(s) 12, 171
PpsI GAGTC 2 cut(s) 12, 171
Ppu21I YACGTR 1 cut(s) 431
PscI ACATGT 1 cut(s) 554
PspN4I GGNNCC 2 cut(s) 327, 474
PstI CTGCAG 1 cut(s) 157
PsuI RGATCY 2 cut(s) 309, 439
PsyI GACNNNGTC 1 cut(s) 776
PvuII CAGCTG 1 cut(s) 491
RsaI GTAC 4 cut(s) 88, 474, 495, 872
RsaNI GTAC 4 cut(s) 87, 473, 494, 871
SaqAI TTAA 8 cut(s) 306, 320, 366, 503, 645, 729, 746, 916
SatI GCNGC 5 cut(s) 153, 156, 360, 537, 620
Sau3AI GATC 4 cut(s) 40, 287, 309, 439
SchI GAGTC 2 cut(s) 13, 171
ScrFI CCNGG 1 cut(s) 330
SduI GDGCHC 3 cut(s) 328, 609, 907
SfaNI GCATC 4 cut(s) 256, 695, 821, 834
SfcI CTRYAG 1 cut(s) 153
SmlI CTYRAG 2 cut(s) 122, 319
SmoI CTYRAG 2 cut(s) 122, 319
Sse9I AATT 4 cut(s) 190, 398, 451, 797
SsiI CCGC 1 cut(s) 362
SspMI CTAG 5 cut(s) 33, 149, 677, 734, 831
StyD4I CCNGG 1 cut(s) 328
StyI CCWWGG 1 cut(s) 874
TaaI ACNGT 8 cut(s) 86, 304, 373, 498, 508, 548, 703, 895
TaiI ACGT 2 cut(s) 433, 720
TaqI TCGA 3 cut(s) 175, 720, 842
TasI AATT 4 cut(s) 190, 398, 451, 797
TfiI GAWTC 4 cut(s) 19, 54, 104, 224
Tru1I TTAA 8 cut(s) 306, 320, 366, 503, 645, 729, 746, 916
Tru9I TTAA 8 cut(s) 306, 320, 366, 503, 645, 729, 746, 916
TscAI CASTG 2 cut(s) 792, 898
TseI GCWGC 5 cut(s) 152, 155, 359, 536, 619
TspDTI ATGAA 2 cut(s) 363, 602
TspRI CASTG 2 cut(s) 792, 898
Tth111I GACNNNGTC 1 cut(s) 776
Vha464I CTTAAG 1 cut(s) 319
VneI GTGCAC 1 cut(s) 903
XapI RAATTY 2 cut(s) 451, 797
XceI RCATGY 2 cut(s) 113, 558
XcmI CCANNNNNNNNNTGG 1 cut(s) 241
XspI CTAG 5 cut(s) 33, 149, 677, 734, 831
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.