Rmu_sc0002927.1_g000057

Protein LST8 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002927.1
OG0007389
Physical Location & Seq
Forward (+)
191307 .. 198763
7457 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002927.1_g000057.1.cds

Sequence Viewer

Length: 1350 bp
atggaaggaaaagaggattttatagaagatgatgtcggaggtctgttggaaatggaagctgattcagatggtatcagttattggacttgcagattgtttggagttccgttagcgttgggtgtggcttggacgcggccacagaggacgacgagcttggaggcatcggactgctgcggctggttggagtcgtcgtggattagggagtggagatcggagactttgacggagggggcttggcggatcttacggagggcggaggaagtggatttgaagctgaggaaggaatcgacggcagcgaaggcatggaaggtgacgatggtgcccaaaaaggagccatctaaggatagggcgagctgggagattagggaggctaggcggggattgagaatccacatccctattccccattttgtccccaaatcccccccccccccccctgaccacactattcgcttctgggaggccaaaagtggccgctgctaccgtaccatccaataccctgattcacaagtaaataggcttgagataaccccggataaacgattcctggctgcagcgggcaaccctcatattcgattgtttgatgttaattcaaacagtcctcaaccggtgatgagctatgattcacatactaataacgtaatggcagtggggtttcagtgtgatgggaactggatgtattcaggttccgaggacggtacagtaaaaatttgggatttgagagctccaggttgccaaagggaatatgaaagccgtgcagctgttaacactgttgtgcttcacccaaatcagactgaactaatatctggggaccaaaatggcaacattcgtgtttgggatttgacagcaaattcttgcagttgtgaattggttccagaggtggatactgctgtaaggtcattaacagttatgtgggatgggagcttggttgttgctgcaaataatcatgggacatgctatgtttggcgcttgttgcgagggacacagactatgacaaattttgagccacttcataagctccaagcacacaagggatacatcctcaaatgtctactttcacctgagttctgtgaaccccacagatatttggccactgcctcttctgaccacactgtcaagatatggaatgttgatggtttcacattagagaaaactctagaagggcatcaacggtgggtttgggactgtgttttttccgtagatggtgcctatcttataacagcttcctctgatacaacagcaaggctttggaacctgtccaccggagaagatatcagggtgtatcaggggcatcacaaagcaaccatttgttgtgcactgcatgatggagctgaacctggtccatcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001932 GO:0001934 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005776 GO:0006935 GO:0006950 GO:0007154 GO:0007165 GO:0007190 GO:0008064 GO:0008150 GO:0009267 GO:0009605 GO:0009893 GO:0009987 GO:0009991 GO:0010562 GO:0010604 GO:0010638 GO:0016043 GO:0019220 GO:0019222 GO:0023052 GO:0030100 GO:0030587 GO:0030832 GO:0030833 GO:0030838 GO:0031152 GO:0031252 GO:0031323 GO:0031325 GO:0031334 GO:0031399 GO:0031401 GO:0031667 GO:0031668 GO:0031669 GO:0031929 GO:0031931 GO:0031932 GO:0032147 GO:0032148 GO:0032268 GO:0032270 GO:0032271 GO:0032273 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0033554 GO:0033674 GO:0035556 GO:0038201 GO:0040011 GO:0042221 GO:0042325 GO:0042327 GO:0042330 GO:0042594 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0043327 GO:0043519 GO:0043520 GO:0043549 GO:0044087 GO:0044089 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0044764 GO:0045806 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048856 GO:0050764 GO:0050765 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051128 GO:0051129 GO:0051130 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051493 GO:0051495 GO:0051703 GO:0051704 GO:0051716 GO:0060255 GO:0060627 GO:0065007 GO:0065008 GO:0065009 GO:0071496 GO:0071840 GO:0080090 GO:0090066 GO:0090702 GO:0098630 GO:0098743 GO:0099120 GO:0110053 GO:1902903 GO:1902905
KEGG Pathways
Metabolic & Signaling
ko04136 ko04138 ko04140 ko04150 ko04151 ko04714 map04136 map04138 map04140 map04150 map04151 map04714
Pfam Domains
Protein Families
WD40

Protein Analysis

449

Amino Acids

50.75

Weight (kDa)

5.95

Isoelectric Point (pI)

40.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1217
AasI GACNNNNNNGTC 1 cut(s) 1112
AccB1I GGYRCC 2 cut(s) 319, 1205
AccI GTMKAC 1 cut(s) 1051
AccII CGCG 1 cut(s) 133
AciI CCGC 7 cut(s) 133, 174, 238, 254, 376, 475, 557
AclWI GGATC 1 cut(s) 248
AcoI YGGCCR 3 cut(s) 134, 472, 1089
AcsI RAATTY 3 cut(s) 708, 850, 997
AfaI GTAC 2 cut(s) 487, 700
AgeI ACCGGT 1 cut(s) 607
AgsI TTSAA 2 cut(s) 271, 594
AjnI CCWGG 3 cut(s) 546, 727, 1336
AleI CACNNNNGTG 1 cut(s) 773
Alw21I GWGCWC 2 cut(s) 727, 1318
Alw26I GTCTC 1 cut(s) 209
Alw44I GTGCAC 1 cut(s) 1314
AlwI GGATC 1 cut(s) 248
AoxI GGCC 4 cut(s) 134, 462, 472, 1089
ApaLI GTGCAC 1 cut(s) 1314
ApeKI GCWGC 7 cut(s) 171, 293, 477, 551, 554, 758, 935
ApoI RAATTY 3 cut(s) 708, 850, 997
AsiGI ACCGGT 1 cut(s) 607
Asp700I GAANNNNTTC 1 cut(s) 870
AspLEI GCGC 1 cut(s) 969
AspS9I GGNCC 2 cut(s) 811, 1340
AsuC2I CCSGG 1 cut(s) 533
AsuHPI GGTGA 4 cut(s) 322, 622, 773, 1050
AvaII GGWCC 2 cut(s) 811, 1340
BaeGI GKGCMC 2 cut(s) 324, 1318
BaeI ACNNNNGTAYC 2 cut(s) 876, 909
BalI TGGCCA 1 cut(s) 1091
BanI GGYRCC 2 cut(s) 319, 1205
BanII GRGCYC 1 cut(s) 727
Bbv12I GWGCWC 2 cut(s) 727, 1318
BbvCI CCTCAGC 1 cut(s) 275
BbvI GCAGC 7 cut(s) 158, 305, 464, 538, 566, 770, 922
BccI CCATC 9 cut(s) 62, 310, 343, 497, 659, 911, 1127, 1196, 1319
BceAI ACGGC 2 cut(s) 306, 738
BciT130I CCWGG 3 cut(s) 548, 729, 1338
BciVI GTATCC 2 cut(s) 877, 1028
BcnI CCSGG 1 cut(s) 533
BcoDI GTCTC 1 cut(s) 209
BfaI CTAG 2 cut(s) 372, 1157
BfmI CTRYAG 1 cut(s) 552
BfoI RGCGCY 1 cut(s) 970
BfuI GTATCC 2 cut(s) 877, 1028
Bme1390I CCNGG 4 cut(s) 533, 548, 729, 1338
Bme18I GGWCC 2 cut(s) 811, 1340
BmgT120I GGNCC 2 cut(s) 811, 1340
BmiI GGNNCC 7 cut(s) 321, 333, 688, 812, 873, 1207, 1253
BmrFI CCNGG 4 cut(s) 533, 548, 729, 1338
BmsI GCATC 3 cut(s) 170, 1174, 1300
BpmI CTGGAG 1 cut(s) 711
Bpu10I CCTNAGC 1 cut(s) 275
BpuEI CTTGAG 1 cut(s) 542
BpuMI CCSGG 1 cut(s) 533
BsaJI CCNNGG 2 cut(s) 531, 690
BsaWI WCCGGW 2 cut(s) 607, 1262
BsaXI ACNNNNNCTCC 2 cut(s) 176, 206
Bse118I RCCGGY 1 cut(s) 607
Bse1I ACTGG 1 cut(s) 677
BseBI CCWGG 3 cut(s) 548, 729, 1338
BseDI CCNNGG 2 cut(s) 531, 690
BseGI GGATG 5 cut(s) 393, 489, 681, 922, 1038
BseMII CTCAG 2 cut(s) 266, 1053
BseNI ACTGG 1 cut(s) 677
BseSI GKGCMC 2 cut(s) 324, 1318
BseXI GCAGC 7 cut(s) 158, 305, 464, 538, 566, 770, 922
BseYI CCCAGC 1 cut(s) 354
BsgI GTGCAG 1 cut(s) 777
Bsh1236I CGCG 1 cut(s) 133
BshFI GGCC 4 cut(s) 136, 464, 474, 1091
BshNI GGYRCC 2 cut(s) 319, 1205
BshTI ACCGGT 1 cut(s) 607
BsiHKAI GWGCWC 2 cut(s) 727, 1318
BsiSI CCGG 3 cut(s) 533, 608, 1263
BslFI GGGAC 5 cut(s) 398, 824, 964, 994, 1196
BsmAI GTCTC 1 cut(s) 209
BsmFI GGGAC 5 cut(s) 398, 824, 964, 994, 1196
BsnI GGCC 4 cut(s) 136, 464, 474, 1091
Bsp1286I GDGCHC 3 cut(s) 324, 727, 1318
Bsp143I GATC 2 cut(s) 209, 240
BspACI CCGC 7 cut(s) 133, 174, 238, 254, 376, 475, 557
BspANI GGCC 4 cut(s) 136, 464, 474, 1091
BspCNI CTCAG 2 cut(s) 267, 1054
BspFNI CGCG 1 cut(s) 133
BspLI GGNNCC 7 cut(s) 321, 333, 688, 812, 873, 1207, 1253
BspMAI CTGCAG 1 cut(s) 556
BspPI GGATC 1 cut(s) 248
BspT107I GGYRCC 2 cut(s) 319, 1205
BsrFI RCCGGY 1 cut(s) 607
BsrI ACTGG 1 cut(s) 677
BssAI RCCGGY 1 cut(s) 607
BssECI CCNNGG 2 cut(s) 531, 690
BssMI GATC 2 cut(s) 209, 240
Bst2UI CCWGG 3 cut(s) 548, 729, 1338
Bst4CI ACNGT 9 cut(s) 485, 599, 698, 703, 772, 907, 1114, 1173, 1187
Bst6I CTCTTC 1 cut(s) 1105
BstC8I GCNNGC 2 cut(s) 352, 559
BstDEI CTNAG 3 cut(s) 275, 339, 1062
BstF5I GGATG 5 cut(s) 393, 489, 681, 922, 1038
BstFNI CGCG 1 cut(s) 133
BstH2I RGCGCY 1 cut(s) 970
BstHHI GCGC 1 cut(s) 969
BstKTI GATC 2 cut(s) 212, 243
BstMAI GTCTC 1 cut(s) 209
BstMBI GATC 2 cut(s) 209, 240
BstMWI GCNNNNNNNGC 2 cut(s) 299, 973
BstNI CCWGG 3 cut(s) 548, 729, 1338
BstNSI RCATGY 1 cut(s) 957
BstSCI CCNGG 4 cut(s) 531, 546, 727, 1336
BstSFI CTRYAG 1 cut(s) 552
BstSLI GKGCMC 2 cut(s) 324, 1318
BstUI CGCG 1 cut(s) 133
BstV1I GCAGC 7 cut(s) 158, 305, 464, 538, 566, 770, 922
BstX2I RGATCY 1 cut(s) 240
BstYI RGATCY 1 cut(s) 240
BsuI GTATCC 2 cut(s) 877, 1028
BsuRI GGCC 4 cut(s) 136, 464, 474, 1091
BtsCI GGATG 5 cut(s) 393, 489, 681, 922, 1038
BtsI GCAGTG 3 cut(s) 654, 1092, 1316
BtsIMutI CAGTG 6 cut(s) 654, 665, 768, 1092, 1110, 1316
Cac8I GCNNGC 2 cut(s) 352, 559
CfoI GCGC 1 cut(s) 969
Cfr10I RCCGGY 1 cut(s) 607
Cfr13I GGNCC 2 cut(s) 811, 1340
CseI GACGC 1 cut(s) 139
CsiI ACCWGGT 1 cut(s) 1336
Csp6I GTAC 2 cut(s) 486, 699
CspAI ACCGGT 1 cut(s) 607
CviAII CATG 4 cut(s) 303, 947, 954, 1322
CviQI GTAC 2 cut(s) 486, 699
DdeI CTNAG 3 cut(s) 275, 339, 1062
DpnI GATC 2 cut(s) 211, 242
DpnII GATC 2 cut(s) 209, 240
DrdI GACNNNNNNGTC 1 cut(s) 1112
DseDI GACNNNNNNGTC 1 cut(s) 1112
EaeI YGGCCR 3 cut(s) 134, 472, 1089
Eam1104I CTCTTC 1 cut(s) 1105
EarI CTCTTC 1 cut(s) 1105
EciI GGCGGA 2 cut(s) 253, 269
Ecl136II GAGCTC 1 cut(s) 725
Eco24I GRGCYC 1 cut(s) 727
Eco32I GATATC 1 cut(s) 1273
Eco47I GGWCC 2 cut(s) 811, 1340
Eco53kI GAGCTC 1 cut(s) 725
EcoICRI GAGCTC 1 cut(s) 725
EcoRII CCWGG 3 cut(s) 546, 727, 1336
EcoRV GATATC 1 cut(s) 1273
EcoT38I GRGCYC 1 cut(s) 727
FaeI CATG 4 cut(s) 306, 950, 957, 1325
FaqI GGGAC 5 cut(s) 398, 824, 964, 994, 1196
FatI CATG 4 cut(s) 302, 946, 953, 1321
FauI CCCGC 2 cut(s) 369, 550
FblI GTMKAC 1 cut(s) 1051
FokI GGATG 5 cut(s) 380, 476, 688, 929, 1025
FriOI GRGCYC 1 cut(s) 727
FspBI CTAG 2 cut(s) 372, 1157
GlaI GCGC 1 cut(s) 968
GsaI CCCAGC 1 cut(s) 358
GsuI CTGGAG 1 cut(s) 711
HaeII RGCGCY 1 cut(s) 970
HaeIII GGCC 4 cut(s) 136, 464, 474, 1091
HapII CCGG 3 cut(s) 533, 608, 1263
HgaI GACGC 1 cut(s) 139
HhaI GCGC 1 cut(s) 969
Hin1II CATG 4 cut(s) 306, 950, 957, 1325
Hin6I GCGC 1 cut(s) 967
HinP1I GCGC 1 cut(s) 967
HincII GTYRAC 1 cut(s) 766
HindII GTYRAC 1 cut(s) 766
HinfI GANTC 7 cut(s) 62, 185, 284, 387, 503, 543, 623
HpaI GTTAAC 1 cut(s) 766
HpaII CCGG 3 cut(s) 533, 608, 1263
HphI GGTGA 4 cut(s) 322, 622, 773, 1050
Hpy166II GTNNAC 5 cut(s) 766, 1052, 1073, 1260, 1316
Hpy188I TCNGA 8 cut(s) 38, 67, 166, 214, 691, 792, 1105, 1231
Hpy188III TCNNGA 4 cut(s) 875, 1117, 1157, 1347
Hpy8I GTNNAC 5 cut(s) 766, 1052, 1073, 1260, 1316
Hpy99I CGWCG 3 cut(s) 151, 193, 292
HpyAV CCTTC 4 cut(s) 274, 292, 301, 1154
HpyCH4III ACNGT 9 cut(s) 485, 599, 698, 703, 772, 907, 1114, 1173, 1187
HpyCH4IV ACGT 1 cut(s) 639
HpyCH4V TGCA 7 cut(s) 90, 554, 758, 858, 938, 1316, 1321
HpyF10VI GCNNNNNNNGC 2 cut(s) 299, 973
HpyF3I CTNAG 3 cut(s) 275, 339, 1062
HpySE526I ACGT 1 cut(s) 639
Hsp92II CATG 4 cut(s) 306, 950, 957, 1325
HspAI GCGC 1 cut(s) 967
KspAI GTTAAC 1 cut(s) 766
Kzo9I GATC 2 cut(s) 209, 240
LmnI GCTCC 5 cut(s) 331, 730, 921, 1023, 1328
Lsp1109I GCAGC 7 cut(s) 158, 305, 464, 538, 566, 770, 922
LweI GCATC 3 cut(s) 170, 1174, 1300
MabI ACCWGGT 1 cut(s) 1336
MaeI CTAG 2 cut(s) 372, 1157
MaeII ACGT 1 cut(s) 639
MaeIII GTNAC 1 cut(s) 310
MalI GATC 2 cut(s) 211, 242
MboI GATC 2 cut(s) 209, 240
MboII GAAGA 3 cut(s) 38, 1092, 1280
MflI RGATCY 1 cut(s) 240
MhlI GDGCHC 3 cut(s) 324, 727, 1318
MlsI TGGCCA 1 cut(s) 1091
MluCI AATT 5 cut(s) 589, 708, 850, 866, 997
MluNI TGGCCA 1 cut(s) 1091
MlyI GAGTC 1 cut(s) 194
MmeI TCCRAC 3 cut(s) 16, 27, 162
Mox20I TGGCCA 1 cut(s) 1091
MroXI GAANNNNTTC 1 cut(s) 870
MscI TGGCCA 1 cut(s) 1091
MseI TTAA 3 cut(s) 588, 765, 902
MslI CAYNNNNRTG 1 cut(s) 773
Msp20I TGGCCA 1 cut(s) 1091
MspA1I CMGCKG 3 cut(s) 477, 557, 761
MspI CCGG 3 cut(s) 533, 608, 1263
MspR9I CCNGG 4 cut(s) 533, 548, 729, 1338
MvaI CCWGG 3 cut(s) 548, 729, 1338
MvnI CGCG 1 cut(s) 133
MwoI GCNNNNNNNGC 2 cut(s) 299, 973
NciI CCSGG 1 cut(s) 533
NdeII GATC 2 cut(s) 209, 240
NlaIII CATG 4 cut(s) 306, 950, 957, 1325
NlaIV GGNNCC 7 cut(s) 321, 333, 688, 812, 873, 1207, 1253
NmuCI GTSAC 1 cut(s) 310
NspI RCATGY 1 cut(s) 957
OliI CACNNNNGTG 1 cut(s) 773
PcsI WCGNNNNNNNCGW 1 cut(s) 293
PdmI GAANNNNTTC 1 cut(s) 870
PfeI GAWTC 6 cut(s) 62, 284, 387, 503, 543, 623
PinAI ACCGGT 1 cut(s) 607
PleI GAGTC 1 cut(s) 193
PpsI GAGTC 1 cut(s) 193
PsiI TTATAA 1 cut(s) 1217
Psp124BI GAGCTC 1 cut(s) 727
Psp6I CCWGG 3 cut(s) 546, 727, 1336
PspFI CCCAGC 1 cut(s) 354
PspGI CCWGG 3 cut(s) 546, 727, 1336
PspN4I GGNNCC 7 cut(s) 321, 333, 688, 812, 873, 1207, 1253
PspPI GGNCC 2 cut(s) 811, 1340
PstI CTGCAG 1 cut(s) 556
PsuI RGATCY 1 cut(s) 240
PvuII CAGCTG 1 cut(s) 761
RsaI GTAC 2 cut(s) 487, 700
RsaNI GTAC 2 cut(s) 486, 699
RseI CAYNNNNRTG 1 cut(s) 773
SacI GAGCTC 1 cut(s) 727
SaqAI TTAA 3 cut(s) 588, 765, 902
Sau3AI GATC 2 cut(s) 209, 240
Sau96I GGNCC 2 cut(s) 811, 1340
SchI GAGTC 1 cut(s) 194
ScrFI CCNGG 4 cut(s) 533, 548, 729, 1338
SduI GDGCHC 3 cut(s) 324, 727, 1318
SexAI ACCWGGT 1 cut(s) 1336
SfaNI GCATC 3 cut(s) 170, 1174, 1300
SfcI CTRYAG 1 cut(s) 552
SinI GGWCC 2 cut(s) 811, 1340
SmiMI CAYNNNNRTG 1 cut(s) 773
SmlI CTYRAG 1 cut(s) 521
SmoI CTYRAG 1 cut(s) 521
Sse9I AATT 5 cut(s) 589, 708, 850, 866, 997
SsiI CCGC 7 cut(s) 133, 174, 238, 254, 376, 475, 557
SspMI CTAG 2 cut(s) 372, 1157
SstI GAGCTC 1 cut(s) 727
StyD4I CCNGG 4 cut(s) 531, 546, 727, 1336
TaaI ACNGT 9 cut(s) 485, 599, 698, 703, 772, 907, 1114, 1173, 1187
TaiI ACGT 1 cut(s) 642
TaqI TCGA 2 cut(s) 287, 574
TasI AATT 5 cut(s) 589, 708, 850, 866, 997
TauI GCSGC 3 cut(s) 136, 177, 477
TfiI GAWTC 6 cut(s) 62, 284, 387, 503, 543, 623
Tru1I TTAA 3 cut(s) 588, 765, 902
Tru9I TTAA 3 cut(s) 588, 765, 902
TscAI CASTG 6 cut(s) 654, 665, 775, 1099, 1117, 1323
TseFI GTSAC 1 cut(s) 310
TseI GCWGC 7 cut(s) 171, 293, 477, 551, 554, 758, 935
Tsp45I GTSAC 1 cut(s) 310
TspDTI ATGAA 2 cut(s) 762, 1001
TspGWI ACGGA 4 cut(s) 96, 239, 262, 1186
TspRI CASTG 6 cut(s) 654, 665, 775, 1099, 1117, 1323
VneI GTGCAC 1 cut(s) 1314
VpaK11BI GGWCC 2 cut(s) 811, 1340
XapI RAATTY 3 cut(s) 708, 850, 997
XbaI TCTAGA 1 cut(s) 1156
XceI RCATGY 1 cut(s) 957
XmiI GTMKAC 1 cut(s) 1051
XmnI GAANNNNTTC 1 cut(s) 870
XspI CTAG 2 cut(s) 372, 1157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.