Prupe.7G067800_v2.0.a1

Protein LST8 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0007389
Physical Location & Seq
Reverse (-)
10602084 .. 10606840
4757 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G067800.3

Sequence Viewer

Length: 978 bp
ATGCCCACTCAGGAGGAGATTAAGATGAGCCAGCAACCATCGGTGATCCTAGCAACGGCTAGCTATGACCACACTATTCGGTTTTGGGAGGCCAAAAGTGGCCGCTGCTATCGTACCATCCAATACCCTGATTCACAAGTTAATAGGCTCGAGATTACTCCAGATAAACGCTTCCTGGCTGCAGCCGGCAATCCTCACATTCGATTATTTGATGTTAATTCAAACAGCCCTCAACCGGTGATGAGCTATGATTCACATACTAATAATGTAATGGCAGTGGGATTTCAATGTGATGGAAACTGGATGTATTCAGGTTCTGAGGATGGTACAGTAAAAATTTGGGATTTGAGAGCTCCAGGTTGTCAACGGGAATATGAAAGCCGTGCAGCTGTTAACACTGTTGTGCTGCACCCAAATCAGACTGAACTGATATCTGGGGACCAAAATGGCAATATTCGTGTTTGGGATTTGACAGCAAATTCATGCAGCTGCGAACTGGTTCCAGAGGTGGATACGGCTGTAAGGTCATTAACAGTGATGTGGGATGGGAGCCTGGTTGTTGCAGCAAATAATCATGGTACATGCTATGTTTGGCGCTTGTTGCGGGGAACCCAGACTATGACAAATTTTGAGCCACTTCATAAGCTGCAAGCACACAAGGGATACATCCTCAAATGTCTTCTTTCACCTGAATTCTGTGAACCCCACAGATATCTGGCGACCGCCTCTTCTGACCACACTGTCAAGATATGGAATGTTGATGGTTTCACATTAGAGAAAACTCTAGTAGGACATCAGCGGTGGGTATGGGACTGTGTTTTCTCAGTAGATGGTGCCTATCTTATAACAGCTTCCTCAGATACAACAGCAAGACTTTGGTCCATGTCCACTGGTGAAGATATCAGGGTGTATCAGGGGCATCACAAAGCAACCATTTGTTGTGCACTTCATGATGGAGCTGAACCTTCTTCATCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001932 GO:0001934 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005776 GO:0006935 GO:0006950 GO:0007154 GO:0007165 GO:0007190 GO:0008064 GO:0008150 GO:0009267 GO:0009605 GO:0009893 GO:0009987 GO:0009991 GO:0010562 GO:0010604 GO:0010638 GO:0016043 GO:0019220 GO:0019222 GO:0023052 GO:0030100 GO:0030587 GO:0030832 GO:0030833 GO:0030838 GO:0031152 GO:0031252 GO:0031323 GO:0031325 GO:0031334 GO:0031399 GO:0031401 GO:0031667 GO:0031668 GO:0031669 GO:0031929 GO:0031931 GO:0031932 GO:0032147 GO:0032148 GO:0032268 GO:0032270 GO:0032271 GO:0032273 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0033554 GO:0033674 GO:0035556 GO:0038201 GO:0040011 GO:0042221 GO:0042325 GO:0042327 GO:0042330 GO:0042594 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0043327 GO:0043519 GO:0043520 GO:0043549 GO:0044087 GO:0044089 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0044764 GO:0045806 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048856 GO:0050764 GO:0050765 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051128 GO:0051129 GO:0051130 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051493 GO:0051495 GO:0051703 GO:0051704 GO:0051716 GO:0060255 GO:0060627 GO:0065007 GO:0065008 GO:0065009 GO:0071496 GO:0071840 GO:0080090 GO:0090066 GO:0090702 GO:0098630 GO:0098743 GO:0099120 GO:0110053 GO:1902903 GO:1902905
KEGG Pathways
Metabolic & Signaling
ko04136 ko04138 ko04140 ko04150 ko04151 ko04714 map04136 map04138 map04140 map04150 map04151 map04714
Pfam Domains
Protein Families
WD40

Protein Analysis

326

Amino Acids

36.45

Weight (kDa)

5.88

Isoelectric Point (pI)

43.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 845
AasI GACNNNNNNGTC 1 cut(s) 740
AccB1I GGYRCC 1 cut(s) 833
AciI CCGC 4 cut(s) 103, 604, 723, 799
AclWI GGATC 1 cut(s) 40
AcoI YGGCCR 1 cut(s) 100
AcsI RAATTY 4 cut(s) 336, 478, 625, 692
AfaI GTAC 3 cut(s) 115, 328, 580
AfiI CCNNNNNNNGG 2 cut(s) 55, 235
AgeI ACCGGT 1 cut(s) 235
AgsI TTSAA 2 cut(s) 222, 287
AjnI CCWGG 3 cut(s) 174, 355, 552
AleI CACNNNNGTG 1 cut(s) 401
AluBI AGCT 8 cut(s) 63, 246, 353, 389, 489, 646, 851, 959
AluI AGCT 8 cut(s) 63, 246, 353, 389, 489, 646, 851, 959
Alw21I GWGCWC 2 cut(s) 355, 946
Alw44I GTGCAC 1 cut(s) 942
AlwI GGATC 1 cut(s) 40
AlwNI CAGNNNCTG 1 cut(s) 317
Ama87I CYCGRG 1 cut(s) 149
AoxI GGCC 2 cut(s) 90, 100
ApaLI GTGCAC 1 cut(s) 942
ApeKI GCWGC 9 cut(s) 105, 179, 182, 386, 406, 486, 489, 563, 646
ApoI RAATTY 4 cut(s) 336, 478, 625, 692
AsiGI ACCGGT 1 cut(s) 235
Asp700I GAANNNNTTC 1 cut(s) 498
AspLEI GCGC 1 cut(s) 597
AspS9I GGNCC 2 cut(s) 439, 879
AsuHPI GGTGA 4 cut(s) 55, 250, 678, 905
AsuNHI GCTAGC 1 cut(s) 59
AvaI CYCGRG 1 cut(s) 149
AvaII GGWCC 2 cut(s) 439, 879
BaeGI GKGCMC 1 cut(s) 946
BaeI ACNNNNGTAYC 2 cut(s) 504, 537
BanI GGYRCC 1 cut(s) 833
BanII GRGCYC 1 cut(s) 355
BbsI GAAGAC 1 cut(s) 671
Bbv12I GWGCWC 2 cut(s) 355, 946
BbvI GCAGC 9 cut(s) 92, 166, 194, 393, 398, 476, 498, 575, 633
BccI CCATC 8 cut(s) 46, 125, 287, 317, 539, 755, 824, 947
BceAI ACGGC 3 cut(s) 72, 366, 531
BciT130I CCWGG 3 cut(s) 176, 357, 554
BciVI GTATCC 2 cut(s) 505, 656
BfaI CTAG 3 cut(s) 50, 60, 785
BfmI CTRYAG 1 cut(s) 180
BfoI RGCGCY 1 cut(s) 598
BfuI GTATCC 2 cut(s) 505, 656
Bme1390I CCNGG 3 cut(s) 176, 357, 554
Bme18I GGWCC 2 cut(s) 439, 879
BmeT110I CYCGRG 1 cut(s) 149
BmgT120I GGNCC 2 cut(s) 439, 879
BmiI GGNNCC 5 cut(s) 440, 501, 551, 610, 835
BmrFI CCNGG 3 cut(s) 176, 357, 554
BmsI GCATC 1 cut(s) 928
BmtI GCTAGC 1 cut(s) 63
BoxI GACNNNNGTC 1 cut(s) 877
BpiI GAAGAC 1 cut(s) 671
BpmI CTGGAG 2 cut(s) 144, 339
BsaWI WCCGGW 1 cut(s) 235
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 235
Bse118I RCCGGY 2 cut(s) 185, 235
Bse1I ACTGG 3 cut(s) 305, 501, 895
BseBI CCWGG 3 cut(s) 176, 357, 554
BseGI GGATG 6 cut(s) 117, 309, 328, 550, 666, 971
BseLI CCNNNNNNNGG 2 cut(s) 55, 235
BseMII CTCAG 4 cut(s) 23, 309, 837, 870
BseNI ACTGG 3 cut(s) 305, 501, 895
BseRI GAGGAG 1 cut(s) 29
BseSI GKGCMC 1 cut(s) 946
BseXI GCAGC 9 cut(s) 92, 166, 194, 393, 398, 476, 498, 575, 633
BsgI GTGCAG 2 cut(s) 392, 405
Bsh1285I CGRYCG 1 cut(s) 723
BshFI GGCC 2 cut(s) 92, 102
BshNI GGYRCC 1 cut(s) 833
BshTI ACCGGT 1 cut(s) 235
BsiEI CGRYCG 1 cut(s) 723
BsiHKAI GWGCWC 2 cut(s) 355, 946
BsiHKCI CYCGRG 1 cut(s) 149
BsiSI CCGG 2 cut(s) 186, 236
BslFI GGGAC 2 cut(s) 452, 824
BslI CCNNNNNNNGG 2 cut(s) 55, 235
BsmFI GGGAC 2 cut(s) 452, 824
BsnI GGCC 2 cut(s) 92, 102
BsoBI CYCGRG 1 cut(s) 149
Bsp1286I GDGCHC 2 cut(s) 355, 946
Bsp143I GATC 1 cut(s) 45
BspACI CCGC 4 cut(s) 103, 604, 723, 799
BspANI GGCC 2 cut(s) 92, 102
BspCNI CTCAG 4 cut(s) 22, 310, 836, 869
BspHI TCATGA 1 cut(s) 949
BspLI GGNNCC 5 cut(s) 440, 501, 551, 610, 835
BspMAI CTGCAG 1 cut(s) 184
BspOI GCTAGC 1 cut(s) 63
BspPI GGATC 1 cut(s) 40
BspT107I GGYRCC 1 cut(s) 833
BsrFI RCCGGY 2 cut(s) 185, 235
BsrI ACTGG 3 cut(s) 305, 501, 895
BssAI RCCGGY 2 cut(s) 185, 235
BssMI GATC 1 cut(s) 45
Bst2UI CCWGG 3 cut(s) 176, 357, 554
Bst4CI ACNGT 5 cut(s) 331, 400, 535, 742, 815
Bst6I CTCTTC 1 cut(s) 733
BstC8I GCNNGC 4 cut(s) 32, 61, 187, 651
BstDEI CTNAG 4 cut(s) 9, 318, 823, 856
BstF5I GGATG 6 cut(s) 117, 309, 328, 550, 666, 971
BstH2I RGCGCY 1 cut(s) 598
BstHHI GCGC 1 cut(s) 597
BstKTI GATC 1 cut(s) 48
BstMBI GATC 1 cut(s) 45
BstMCI CGRYCG 1 cut(s) 723
BstMWI GCNNNNNNNGC 1 cut(s) 601
BstNI CCWGG 3 cut(s) 176, 357, 554
BstNSI RCATGY 1 cut(s) 585
BstPAI GACNNNNGTC 1 cut(s) 877
BstSCI CCNGG 3 cut(s) 174, 355, 552
BstSFI CTRYAG 1 cut(s) 180
BstSLI GKGCMC 1 cut(s) 946
BstV1I GCAGC 9 cut(s) 92, 166, 194, 393, 398, 476, 498, 575, 633
BstV2I GAAGAC 1 cut(s) 671
BsuI GTATCC 2 cut(s) 505, 656
BsuRI GGCC 2 cut(s) 92, 102
BtsCI GGATG 6 cut(s) 117, 309, 328, 550, 666, 971
BtsI GCAGTG 1 cut(s) 282
BtsIMutI CAGTG 5 cut(s) 282, 396, 540, 738, 888
Cac8I GCNNGC 4 cut(s) 32, 61, 187, 651
CaiI CAGNNNCTG 1 cut(s) 317
CciI TCATGA 1 cut(s) 949
CfoI GCGC 1 cut(s) 597
Cfr10I RCCGGY 2 cut(s) 185, 235
Cfr13I GGNCC 2 cut(s) 439, 879
Csp6I GTAC 3 cut(s) 114, 327, 579
CspAI ACCGGT 1 cut(s) 235
CviAII CATG 5 cut(s) 483, 575, 582, 883, 950
CviQI GTAC 3 cut(s) 114, 327, 579
DdeI CTNAG 4 cut(s) 9, 318, 823, 856
DpnI GATC 1 cut(s) 47
DpnII GATC 1 cut(s) 45
DrdI GACNNNNNNGTC 1 cut(s) 740
DseDI GACNNNNNNGTC 1 cut(s) 740
EaeI YGGCCR 1 cut(s) 100
Eam1104I CTCTTC 1 cut(s) 733
EarI CTCTTC 1 cut(s) 733
Ecl136II GAGCTC 1 cut(s) 353
Eco24I GRGCYC 1 cut(s) 355
Eco32I GATATC 3 cut(s) 432, 713, 901
Eco47I GGWCC 2 cut(s) 439, 879
Eco53kI GAGCTC 1 cut(s) 353
Eco88I CYCGRG 1 cut(s) 149
EcoICRI GAGCTC 1 cut(s) 353
EcoRI GAATTC 1 cut(s) 692
EcoRII CCWGG 3 cut(s) 174, 355, 552
EcoRV GATATC 3 cut(s) 432, 713, 901
EcoT38I GRGCYC 1 cut(s) 355
FaeI CATG 5 cut(s) 486, 578, 585, 886, 953
FaqI GGGAC 2 cut(s) 452, 824
FatI CATG 5 cut(s) 482, 574, 581, 882, 949
FauI CCCGC 1 cut(s) 597
FokI GGATG 6 cut(s) 104, 316, 335, 557, 653, 958
FriOI GRGCYC 1 cut(s) 355
FspBI CTAG 3 cut(s) 50, 60, 785
GlaI GCGC 1 cut(s) 596
GsuI CTGGAG 2 cut(s) 144, 339
HaeII RGCGCY 1 cut(s) 598
HaeIII GGCC 2 cut(s) 92, 102
HapII CCGG 2 cut(s) 186, 236
HhaI GCGC 1 cut(s) 597
Hin1II CATG 5 cut(s) 486, 578, 585, 886, 953
Hin6I GCGC 1 cut(s) 595
HinP1I GCGC 1 cut(s) 595
HincII GTYRAC 2 cut(s) 365, 394
HindII GTYRAC 2 cut(s) 365, 394
HinfI GANTC 2 cut(s) 131, 251
HpaI GTTAAC 1 cut(s) 394
HpaII CCGG 2 cut(s) 186, 236
HphI GGTGA 4 cut(s) 55, 250, 678, 905
Hpy166II GTNNAC 5 cut(s) 365, 394, 701, 888, 944
Hpy188I TCNGA 4 cut(s) 319, 420, 733, 859
Hpy188III TCNNGA 7 cut(s) 11, 151, 161, 503, 745, 950, 975
Hpy8I GTNNAC 5 cut(s) 365, 394, 701, 888, 944
HpyAV CCTTC 1 cut(s) 975
HpyCH4III ACNGT 5 cut(s) 331, 400, 535, 742, 815
HpyCH4V TGCA 7 cut(s) 182, 386, 409, 486, 563, 649, 944
HpyF10VI GCNNNNNNNGC 1 cut(s) 601
HpyF3I CTNAG 4 cut(s) 9, 318, 823, 856
Hsp92II CATG 5 cut(s) 486, 578, 585, 886, 953
HspAI GCGC 1 cut(s) 595
KroI GCCGGC 1 cut(s) 185
KroNI GCCGGC 1 cut(s) 187
KspAI GTTAAC 1 cut(s) 394
Kzo9I GATC 1 cut(s) 45
LmnI GCTCC 3 cut(s) 358, 549, 956
Lsp1109I GCAGC 9 cut(s) 92, 166, 194, 393, 398, 476, 498, 575, 633
LweI GCATC 1 cut(s) 928
MaeI CTAG 3 cut(s) 50, 60, 785
MalI GATC 1 cut(s) 47
MboI GATC 1 cut(s) 45
MboII GAAGA 4 cut(s) 671, 720, 908, 960
MhlI GDGCHC 2 cut(s) 355, 946
MluCI AATT 5 cut(s) 217, 336, 478, 625, 692
MnlI CCTC 9 cut(s) 7, 82, 204, 240, 313, 499, 680, 736, 865
MroNI GCCGGC 1 cut(s) 185
MroXI GAANNNNTTC 1 cut(s) 498
MseI TTAA 5 cut(s) 21, 141, 216, 393, 530
MslI CAYNNNNRTG 1 cut(s) 401
MspA1I CMGCKG 4 cut(s) 105, 389, 489, 799
MspI CCGG 2 cut(s) 186, 236
MspR9I CCNGG 3 cut(s) 176, 357, 554
MvaI CCWGG 3 cut(s) 176, 357, 554
MwoI GCNNNNNNNGC 1 cut(s) 601
NaeI GCCGGC 1 cut(s) 187
NdeII GATC 1 cut(s) 45
NgoMIV GCCGGC 1 cut(s) 185
NheI GCTAGC 1 cut(s) 59
NlaIII CATG 5 cut(s) 486, 578, 585, 886, 953
NlaIV GGNNCC 5 cut(s) 440, 501, 551, 610, 835
NspI RCATGY 1 cut(s) 585
OliI CACNNNNGTG 1 cut(s) 401
PaeR7I CTCGAG 1 cut(s) 149
PagI TCATGA 1 cut(s) 949
PdiI GCCGGC 1 cut(s) 187
PdmI GAANNNNTTC 1 cut(s) 498
PfeI GAWTC 2 cut(s) 131, 251
PinAI ACCGGT 1 cut(s) 235
PshAI GACNNNNGTC 1 cut(s) 877
PsiI TTATAA 1 cut(s) 845
Psp124BI GAGCTC 1 cut(s) 355
Psp6I CCWGG 3 cut(s) 174, 355, 552
PspGI CCWGG 3 cut(s) 174, 355, 552
PspN4I GGNNCC 5 cut(s) 440, 501, 551, 610, 835
PspPI GGNCC 2 cut(s) 439, 879
PstI CTGCAG 1 cut(s) 184
PstNI CAGNNNCTG 1 cut(s) 317
PvuII CAGCTG 2 cut(s) 389, 489
RsaI GTAC 3 cut(s) 115, 328, 580
RsaNI GTAC 3 cut(s) 114, 327, 579
RseI CAYNNNNRTG 1 cut(s) 401
SacI GAGCTC 1 cut(s) 355
SaqAI TTAA 5 cut(s) 21, 141, 216, 393, 530
Sau3AI GATC 1 cut(s) 45
Sau96I GGNCC 2 cut(s) 439, 879
ScrFI CCNGG 3 cut(s) 176, 357, 554
SduI GDGCHC 2 cut(s) 355, 946
SfaNI GCATC 1 cut(s) 928
SfcI CTRYAG 1 cut(s) 180
Sfr274I CTCGAG 1 cut(s) 149
SinI GGWCC 2 cut(s) 439, 879
SlaI CTCGAG 1 cut(s) 149
SmiMI CAYNNNNRTG 1 cut(s) 401
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
Sse9I AATT 5 cut(s) 217, 336, 478, 625, 692
SsiI CCGC 4 cut(s) 103, 604, 723, 799
SspI AATATT 1 cut(s) 454
SspMI CTAG 3 cut(s) 50, 60, 785
SstI GAGCTC 1 cut(s) 355
StyD4I CCNGG 3 cut(s) 174, 355, 552
TaaI ACNGT 5 cut(s) 331, 400, 535, 742, 815
TaqI TCGA 2 cut(s) 150, 202
TasI AATT 5 cut(s) 217, 336, 478, 625, 692
TauI GCSGC 1 cut(s) 105
TfiI GAWTC 2 cut(s) 131, 251
Tru1I TTAA 5 cut(s) 21, 141, 216, 393, 530
Tru9I TTAA 5 cut(s) 21, 141, 216, 393, 530
TscAI CASTG 5 cut(s) 282, 403, 540, 745, 895
TseI GCWGC 9 cut(s) 105, 179, 182, 386, 406, 486, 489, 563, 646
TspDTI ATGAA 5 cut(s) 390, 471, 629, 938, 960
TspRI CASTG 5 cut(s) 282, 403, 540, 745, 895
VneI GTGCAC 1 cut(s) 942
VpaK11BI GGWCC 2 cut(s) 439, 879
XapI RAATTY 4 cut(s) 336, 478, 625, 692
XceI RCATGY 1 cut(s) 585
XhoI CTCGAG 1 cut(s) 149
XmnI GAANNNNTTC 1 cut(s) 498
XspI CTAG 3 cut(s) 50, 60, 785
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.