pycom14g05410

Protein LST8 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0007389
Physical Location & Seq
Forward (+)
5250122 .. 5252328
2207 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g05410.6

Sequence Viewer

Length: 675 bp
ATGTATTCAGGTTCTGAGGATGGTACAGTAAAAATTTGGGATCTGAGAGCTCCGGGTTGTCAAAGGGAATATGAAAGTCGTGCAGCTGTTAACACTGTTGTGCTTCACCCGAACCAGACTGAACTAATATCTGGGGACCAAAATGGCAATATTCGTGTTTGGGATTTGACAGCAAATTCGTGCAGCTGTGAATTGGTTCCAGAGGTGGATACGGCTGTAAGGTCATTAACAGTTATGTGGGATGGGAGCTTGGTTGTTGCAGCAAATAATCATGGGACATGCTACGTTTGGCGCTTGTTGCGTGGAAACCAGACGATGTCAAATTTTGAGCCACTTCATAAGCTGCAAGCACACAAGGGATACATTCTTAAATGTCTTCTTTCACCTGAATTCTGTGAACCCCACAGATACTTGGCAACCACCTCTTCGGACCACACTGTCAAGATATGGAATGTAGATGGTTTCACATTAGAGAAAACTTTAGTAGGACATCAACGGTGGGTGTGGGACTGTGTTTTCTCAGCGGACGGTGCCTATCTTATAACAGCTTCCTCTGATACAACAGCGAGACTTTGGTCCATGTCCACCGGTGAAGATATCAGGGTGTATCAGGGGCATCACAAAGCAACAATTTGTTGTGCACTCCATGATGGAGCCGAACCTTCTGCATCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001932 GO:0001934 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005776 GO:0006935 GO:0006950 GO:0007154 GO:0007165 GO:0007190 GO:0008064 GO:0008150 GO:0009267 GO:0009605 GO:0009893 GO:0009987 GO:0009991 GO:0010562 GO:0010604 GO:0010638 GO:0016043 GO:0019220 GO:0019222 GO:0023052 GO:0030100 GO:0030587 GO:0030832 GO:0030833 GO:0030838 GO:0031152 GO:0031252 GO:0031323 GO:0031325 GO:0031334 GO:0031399 GO:0031401 GO:0031667 GO:0031668 GO:0031669 GO:0031929 GO:0031931 GO:0031932 GO:0032147 GO:0032148 GO:0032268 GO:0032270 GO:0032271 GO:0032273 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0033554 GO:0033674 GO:0035556 GO:0038201 GO:0040011 GO:0042221 GO:0042325 GO:0042327 GO:0042330 GO:0042594 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0043327 GO:0043519 GO:0043520 GO:0043549 GO:0044087 GO:0044089 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0044764 GO:0045806 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048856 GO:0050764 GO:0050765 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051128 GO:0051129 GO:0051130 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051493 GO:0051495 GO:0051703 GO:0051704 GO:0051716 GO:0060255 GO:0060627 GO:0065007 GO:0065008 GO:0065009 GO:0071496 GO:0071840 GO:0080090 GO:0090066 GO:0090702 GO:0098630 GO:0098743 GO:0099120 GO:0110053 GO:1902903 GO:1902905
KEGG Pathways
Metabolic & Signaling
ko04136 ko04138 ko04140 ko04150 ko04151 ko04714 map04136 map04138 map04140 map04150 map04151 map04714
Pfam Domains
Protein Families
WD40

Protein Analysis

225

Amino Acids

24.93

Weight (kDa)

5.76

Isoelectric Point (pI)

34.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 542
AasI GACNNNNNNGTC 1 cut(s) 437
AccB1I GGYRCC 1 cut(s) 530
AciI CCGC 1 cut(s) 524
AclWI GGATC 1 cut(s) 48
AcsI RAATTY 4 cut(s) 33, 175, 322, 389
AfaI GTAC 1 cut(s) 25
AgeI ACCGGT 1 cut(s) 587
AleI CACNNNNGTG 1 cut(s) 98
AluBI AGCT 6 cut(s) 50, 86, 186, 249, 343, 548
AluI AGCT 6 cut(s) 50, 86, 186, 249, 343, 548
Alw21I GWGCWC 2 cut(s) 52, 643
Alw26I GTCTC 1 cut(s) 562
Alw44I GTGCAC 1 cut(s) 639
AlwI GGATC 1 cut(s) 48
AlwNI CAGNNNCTG 1 cut(s) 14
ApaLI GTGCAC 1 cut(s) 639
ApeKI GCWGC 4 cut(s) 83, 183, 260, 343
ApoI RAATTY 4 cut(s) 33, 175, 322, 389
ArsI GACNNNNNNTTYG 2 cut(s) 160, 192
AsiGI ACCGGT 1 cut(s) 587
Asp700I GAANNNNTTC 1 cut(s) 195
AspLEI GCGC 1 cut(s) 294
AspS9I GGNCC 3 cut(s) 136, 430, 576
AsuC2I CCSGG 1 cut(s) 54
AsuHPI GGTGA 3 cut(s) 98, 375, 602
AvaII GGWCC 3 cut(s) 136, 430, 576
BaeGI GKGCMC 1 cut(s) 643
BaeI ACNNNNGTAYC 2 cut(s) 201, 234
BanI GGYRCC 1 cut(s) 530
BanII GRGCYC 1 cut(s) 52
BbsI GAAGAC 1 cut(s) 368
Bbv12I GWGCWC 2 cut(s) 52, 643
BbvI GCAGC 4 cut(s) 95, 195, 272, 330
BccI CCATC 4 cut(s) 14, 236, 452, 644
BceAI ACGGC 1 cut(s) 228
BcgI CGANNNNNNTGC 1 cut(s) 647
BciVI GTATCC 2 cut(s) 202, 353
BcnI CCSGG 1 cut(s) 54
BcoDI GTCTC 1 cut(s) 562
BfoI RGCGCY 1 cut(s) 295
BfuI GTATCC 2 cut(s) 202, 353
BisI GCNGC 4 cut(s) 84, 184, 261, 344
BlsI GCNGC 4 cut(s) 85, 185, 262, 345
Bme1390I CCNGG 1 cut(s) 54
Bme18I GGWCC 3 cut(s) 136, 430, 576
BmgT120I GGNCC 3 cut(s) 136, 430, 576
BmiI GGNNCC 4 cut(s) 137, 198, 532, 655
BmrFI CCNGG 1 cut(s) 54
BmsI GCATC 1 cut(s) 625
BoxI GACNNNNGTC 1 cut(s) 574
BpiI GAAGAC 1 cut(s) 368
BpuMI CCSGG 1 cut(s) 54
BsaWI WCCGGW 1 cut(s) 587
Bse118I RCCGGY 1 cut(s) 587
BseGI GGATG 3 cut(s) 25, 247, 668
BseMII CTCAG 3 cut(s) 6, 35, 534
BseSI GKGCMC 1 cut(s) 643
BseXI GCAGC 4 cut(s) 95, 195, 272, 330
BsgI GTGCAG 2 cut(s) 102, 202
BshNI GGYRCC 1 cut(s) 530
BshTI ACCGGT 1 cut(s) 587
BsiHKAI GWGCWC 2 cut(s) 52, 643
BsiSI CCGG 2 cut(s) 53, 588
BslFI GGGAC 3 cut(s) 149, 289, 521
BsmAI GTCTC 1 cut(s) 562
BsmFI GGGAC 3 cut(s) 149, 289, 521
Bsp1286I GDGCHC 2 cut(s) 52, 643
Bsp143I GATC 1 cut(s) 40
BspACI CCGC 1 cut(s) 524
BspCNI CTCAG 3 cut(s) 7, 36, 533
BspLI GGNNCC 4 cut(s) 137, 198, 532, 655
BspPI GGATC 1 cut(s) 48
BspT107I GGYRCC 1 cut(s) 530
BsrFI RCCGGY 1 cut(s) 587
BssAI RCCGGY 1 cut(s) 587
BssMI GATC 1 cut(s) 40
Bst4CI ACNGT 7 cut(s) 28, 97, 232, 439, 498, 512, 530
Bst6I CTCTTC 1 cut(s) 430
BstC8I GCNNGC 1 cut(s) 348
BstDEI CTNAG 3 cut(s) 15, 44, 520
BstF5I GGATG 3 cut(s) 25, 247, 668
BstH2I RGCGCY 1 cut(s) 295
BstHHI GCGC 1 cut(s) 294
BstKTI GATC 1 cut(s) 43
BstMAI GTCTC 1 cut(s) 562
BstMBI GATC 1 cut(s) 40
BstMWI GCNNNNNNNGC 2 cut(s) 298, 530
BstNSI RCATGY 1 cut(s) 282
BstPAI GACNNNNGTC 1 cut(s) 574
BstSCI CCNGG 1 cut(s) 52
BstSLI GKGCMC 1 cut(s) 643
BstV1I GCAGC 4 cut(s) 95, 195, 272, 330
BstV2I GAAGAC 1 cut(s) 368
BstX2I RGATCY 1 cut(s) 40
BstYI RGATCY 1 cut(s) 40
BsuI GTATCC 2 cut(s) 202, 353
BtsCI GGATG 3 cut(s) 25, 247, 668
BtsIMutI CAGTG 2 cut(s) 93, 435
Cac8I GCNNGC 1 cut(s) 348
CaiI CAGNNNCTG 1 cut(s) 14
CfoI GCGC 1 cut(s) 294
Cfr10I RCCGGY 1 cut(s) 587
Cfr13I GGNCC 3 cut(s) 136, 430, 576
Csp6I GTAC 1 cut(s) 24
CspAI ACCGGT 1 cut(s) 587
CviAII CATG 4 cut(s) 272, 279, 580, 647
CviJI RGCY 9 cut(s) 50, 86, 186, 215, 249, 331, 343, 548, 656
CviKI_1 RGCY 9 cut(s) 50, 86, 186, 215, 249, 331, 343, 548, 656
CviQI GTAC 1 cut(s) 24
DdeI CTNAG 3 cut(s) 15, 44, 520
DpnI GATC 1 cut(s) 42
DpnII GATC 1 cut(s) 40
DrdI GACNNNNNNGTC 1 cut(s) 437
DseDI GACNNNNNNGTC 1 cut(s) 437
Eam1104I CTCTTC 1 cut(s) 430
EarI CTCTTC 1 cut(s) 430
Ecl136II GAGCTC 1 cut(s) 50
Eco24I GRGCYC 1 cut(s) 52
Eco32I GATATC 1 cut(s) 598
Eco47I GGWCC 3 cut(s) 136, 430, 576
Eco53kI GAGCTC 1 cut(s) 50
EcoICRI GAGCTC 1 cut(s) 50
EcoRI GAATTC 1 cut(s) 389
EcoRV GATATC 1 cut(s) 598
EcoT38I GRGCYC 1 cut(s) 52
FaeI CATG 4 cut(s) 275, 282, 583, 650
FaiI YATR 9 cut(s) 72, 236, 273, 280, 339, 448, 542, 581, 648
FaqI GGGAC 3 cut(s) 149, 289, 521
FatI CATG 4 cut(s) 271, 278, 579, 646
Fnu4HI GCNGC 4 cut(s) 84, 184, 261, 344
FokI GGATG 3 cut(s) 32, 254, 655
FriOI GRGCYC 1 cut(s) 52
Fsp4HI GCNGC 4 cut(s) 84, 184, 261, 344
GlaI GCGC 1 cut(s) 293
GluI GCNGC 4 cut(s) 84, 184, 261, 344
HaeII RGCGCY 1 cut(s) 295
HapII CCGG 2 cut(s) 53, 588
HhaI GCGC 1 cut(s) 294
Hin1II CATG 4 cut(s) 275, 282, 583, 650
Hin6I GCGC 1 cut(s) 292
HinP1I GCGC 1 cut(s) 292
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HpaI GTTAAC 1 cut(s) 91
HpaII CCGG 2 cut(s) 53, 588
HphI GGTGA 3 cut(s) 98, 375, 602
Hpy166II GTNNAC 4 cut(s) 91, 398, 585, 641
Hpy188I TCNGA 4 cut(s) 16, 45, 430, 556
Hpy188III TCNNGA 3 cut(s) 200, 442, 672
Hpy8I GTNNAC 4 cut(s) 91, 398, 585, 641
HpyAV CCTTC 1 cut(s) 672
HpyCH4III ACNGT 7 cut(s) 28, 97, 232, 439, 498, 512, 530
HpyCH4IV ACGT 1 cut(s) 285
HpyCH4V TGCA 6 cut(s) 83, 183, 260, 346, 641, 668
HpyF10VI GCNNNNNNNGC 2 cut(s) 298, 530
HpyF3I CTNAG 3 cut(s) 15, 44, 520
HpySE526I ACGT 1 cut(s) 285
Hsp92II CATG 4 cut(s) 275, 282, 583, 650
HspAI GCGC 1 cut(s) 292
KspAI GTTAAC 1 cut(s) 91
Kzo9I GATC 1 cut(s) 40
LmnI GCTCC 3 cut(s) 55, 246, 653
LpnPI CCDG 9 cut(s) 66, 117, 128, 213, 323, 399, 586, 596, 601
Lsp1109I GCAGC 4 cut(s) 95, 195, 272, 330
LweI GCATC 1 cut(s) 625
MaeII ACGT 1 cut(s) 285
MalI GATC 1 cut(s) 42
MboI GATC 1 cut(s) 40
MboII GAAGA 3 cut(s) 368, 417, 605
MflI RGATCY 1 cut(s) 40
MhlI GDGCHC 2 cut(s) 52, 643
MluCI AATT 6 cut(s) 33, 175, 191, 322, 389, 630
MnlI CCTC 4 cut(s) 10, 196, 433, 562
MroXI GAANNNNTTC 1 cut(s) 195
MseI TTAA 3 cut(s) 90, 227, 369
MslI CAYNNNNRTG 1 cut(s) 98
MspA1I CMGCKG 3 cut(s) 86, 186, 524
MspI CCGG 2 cut(s) 53, 588
MspR9I CCNGG 1 cut(s) 54
MwoI GCNNNNNNNGC 2 cut(s) 298, 530
NciI CCSGG 1 cut(s) 54
NdeII GATC 1 cut(s) 40
NlaIII CATG 4 cut(s) 275, 282, 583, 650
NlaIV GGNNCC 4 cut(s) 137, 198, 532, 655
NspI RCATGY 1 cut(s) 282
OliI CACNNNNGTG 1 cut(s) 98
PdmI GAANNNNTTC 1 cut(s) 195
PflFI GACNNNGTC 1 cut(s) 316
PinAI ACCGGT 1 cut(s) 587
PkrI GCNGC 4 cut(s) 85, 185, 262, 345
PshAI GACNNNNGTC 1 cut(s) 574
PsiI TTATAA 1 cut(s) 542
Psp124BI GAGCTC 1 cut(s) 52
PspN4I GGNNCC 4 cut(s) 137, 198, 532, 655
PspPI GGNCC 3 cut(s) 136, 430, 576
PstNI CAGNNNCTG 1 cut(s) 14
PsuI RGATCY 1 cut(s) 40
PsyI GACNNNGTC 1 cut(s) 316
PvuII CAGCTG 2 cut(s) 86, 186
RsaI GTAC 1 cut(s) 25
RsaNI GTAC 1 cut(s) 24
RseI CAYNNNNRTG 1 cut(s) 98
SacI GAGCTC 1 cut(s) 52
SaqAI TTAA 3 cut(s) 90, 227, 369
SatI GCNGC 4 cut(s) 84, 184, 261, 344
Sau3AI GATC 1 cut(s) 40
Sau96I GGNCC 3 cut(s) 136, 430, 576
ScrFI CCNGG 1 cut(s) 54
SduI GDGCHC 2 cut(s) 52, 643
SfaNI GCATC 1 cut(s) 625
SgrAI CRCCGGYG 1 cut(s) 587
SinI GGWCC 3 cut(s) 136, 430, 576
SmiMI CAYNNNNRTG 1 cut(s) 98
Sse9I AATT 6 cut(s) 33, 175, 191, 322, 389, 630
SsiI CCGC 1 cut(s) 524
SspI AATATT 1 cut(s) 151
SstI GAGCTC 1 cut(s) 52
StyD4I CCNGG 1 cut(s) 52
TaaI ACNGT 7 cut(s) 28, 97, 232, 439, 498, 512, 530
TaiI ACGT 1 cut(s) 288
TasI AATT 6 cut(s) 33, 175, 191, 322, 389, 630
Tru1I TTAA 3 cut(s) 90, 227, 369
Tru9I TTAA 3 cut(s) 90, 227, 369
TscAI CASTG 2 cut(s) 100, 442
TseI GCWGC 4 cut(s) 83, 183, 260, 343
TspDTI ATGAA 2 cut(s) 87, 326
TspRI CASTG 2 cut(s) 100, 442
Tth111I GACNNNGTC 1 cut(s) 316
VneI GTGCAC 1 cut(s) 639
VpaK11BI GGWCC 3 cut(s) 136, 430, 576
XapI RAATTY 4 cut(s) 33, 175, 322, 389
XceI RCATGY 1 cut(s) 282
XmnI GAANNNNTTC 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.