Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8468049.1

Orthogroup ID

OG0007389

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1647

Gene Structure 1647 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8468049.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

atgagccaacaaccgtcggtgatacttgcgacggcgagctatgaccacactattcgcttctgggaggccaaaagtggccgctgctaccgtaccatccaataccctgattcacaagtaaataggcttgagataaccccggataaacgattcctggctgcagcgggcaaccctcatattcgattgtttgatgttaattcaaacagtcctcaaccggtgatgagctatgattcacatactaataacgtaatggcagtggggtttcagtgtgatgggaactggatgtattcaggttccgaggacggtacagtaaaaatttgggatttgagagctccaggttgccaaagggaatatgaaagccgtgcagctgttaacactgttgtgcttcacccaaatcagactgaactaatatctggggaccaaaatggcaacattcgtgtttgggatttgacagcaaattcttgcagttgtgaattg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005776 GO:0006935 GO:0006950 GO:0007154 GO:0007165 GO:0007190 GO:0008064 GO:0008150 GO:0009267 GO:0009605 GO:0009893 GO:0009987 GO:0009991 GO:0010562 GO:0010604 GO:0010638 GO:0016043 GO:0019220 GO:0019222 GO:0023052 GO:0030100 GO:0030587 GO:0030832 GO:0030833 GO:0030838 GO:0031152 GO:0031252 GO:0031323 GO:0031325 GO:0031334 GO:0031399 GO:0031401 GO:0031667 GO:0031668 GO:0031669 GO:0031929 GO:0031931 GO:0031932 GO:0032147 GO:0032148 GO:0032268 GO:0032270 GO:0032271 GO:0032273 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0033554 GO:0033674 GO:0035556 GO:0038201 GO:0040011 GO:0042221 GO:0042325 GO:0042327 GO:0042330 GO:0042594 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0043327 GO:0043519 GO:0043520 GO:0043549 GO:0044087 GO:0044089 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0044764 GO:0045806 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048856 GO:0050764 GO:0050765 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051128 GO:0051129 GO:0051130 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051493 GO:0051495 GO:0051703 GO:0051704 GO:0051716 GO:0060255 GO:0060627 GO:0065007 GO:0065008 GO:0065009 GO:0071496 GO:0071840 GO:0080090 GO:0090066 GO:0090702 GO:0098630 GO:0098743 GO:0099120 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 ko04150 ko04151 ko04714 map04136 map04138 map04140 map04150 map04151 map04714

Pfam Domains

Protein Families

WD40

Protein Analysis

158

Amino Acids

17.75

Weight (kDa)

5.47

Isoelectric Point (pI)

49.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18140 AT3G18140
fragaria_vesca	FvH4_6g23200 FvH4_6g23200 FvH4_6g23200 FvH4_6g23200
malus_domestica	MD12G1066500.v1.1 MD14G1066600.v1.1
prunus_persica	Prupe.7G067800_v2.0.a1 Prupe.7G067800_v2.0.a1 Prupe.7G067800_v2.0.a1 Prupe.7G067800_v2.0.a1
pyrus_communis	pycom12g05790 pycom14g05410
rosa_chinensis	RchiOBHm_Chr3g0481011
rosa_laevigata	RLG00000023432
rosa_multiflora	Rmu_co8468049.1_g000001 Rmu_sc0002927.1_g000057
rosa_roxburghii	Rroxscaffold_6G00400740
rosa_rugosa	Rorug03G0189100
rosa_samantha	Rh3AG239900 Rh3BG275000 Rh3CG270500 Rh3DG266400
rosa_wichuraiana	Rw0G008440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	79, 161
AcoI	YGGCCR	1 cut(s)	76
AcsI	RAATTY	2 cut(s)	312, 454
AfaI	GTAC	2 cut(s)	91, 304
AgeI	ACCGGT	1 cut(s)	211
AgsI	TTSAA	1 cut(s)	198
AjnI	CCWGG	2 cut(s)	150, 331
AleI	CACNNNNGTG	1 cut(s)	377
AluBI	AGCT	4 cut(s)	39, 222, 329, 365
AluI	AGCT	4 cut(s)	39, 222, 329, 365
Alw21I	GWGCWC	1 cut(s)	331
AoxI	GGCC	2 cut(s)	66, 76
ApeKI	GCWGC	4 cut(s)	81, 155, 158, 362
ApoI	RAATTY	2 cut(s)	312, 454
AsiGI	ACCGGT	1 cut(s)	211
AspS9I	GGNCC	1 cut(s)	415
AsuC2I	CCSGG	1 cut(s)	137
AsuHPI	GGTGA	3 cut(s)	31, 226, 377
AvaII	GGWCC	1 cut(s)	415
BanII	GRGCYC	1 cut(s)	331
Bbv12I	GWGCWC	1 cut(s)	331
BbvI	GCAGC	4 cut(s)	68, 142, 170, 374
BccI	CCATC	2 cut(s)	101, 263
BceAI	ACGGC	2 cut(s)	48, 342
BciT130I	CCWGG	2 cut(s)	152, 333
BcnI	CCSGG	1 cut(s)	137
BfmI	CTRYAG	1 cut(s)	156
BisI	GCNGC	5 cut(s)	79, 82, 156, 159, 363
BlsI	GCNGC	5 cut(s)	80, 83, 157, 160, 364
Bme1390I	CCNGG	3 cut(s)	137, 152, 333
Bme18I	GGWCC	1 cut(s)	415
BmgT120I	GGNCC	1 cut(s)	415
BmiI	GGNNCC	2 cut(s)	292, 416
BmrFI	CCNGG	3 cut(s)	137, 152, 333
BpmI	CTGGAG	1 cut(s)	315
BpuEI	CTTGAG	1 cut(s)	146
BpuMI	CCSGG	1 cut(s)	137
BsaJI	CCNNGG	2 cut(s)	135, 294
BsaWI	WCCGGW	1 cut(s)	211
Bse118I	RCCGGY	1 cut(s)	211
Bse1I	ACTGG	1 cut(s)	281
BseBI	CCWGG	2 cut(s)	152, 333
BseDI	CCNNGG	2 cut(s)	135, 294
BseGI	GGATG	2 cut(s)	93, 285
BseNI	ACTGG	1 cut(s)	281
BseXI	GCAGC	4 cut(s)	68, 142, 170, 374
BsgI	GTGCAG	1 cut(s)	381
BshFI	GGCC	2 cut(s)	68, 78
BshTI	ACCGGT	1 cut(s)	211
BsiHKAI	GWGCWC	1 cut(s)	331
BsiSI	CCGG	2 cut(s)	137, 212
BslFI	GGGAC	1 cut(s)	428
BsmFI	GGGAC	1 cut(s)	428
BsnI	GGCC	2 cut(s)	68, 78
Bsp1286I	GDGCHC	1 cut(s)	331
BspACI	CCGC	2 cut(s)	79, 161
BspANI	GGCC	2 cut(s)	68, 78
BspLI	GGNNCC	2 cut(s)	292, 416
BspMAI	CTGCAG	1 cut(s)	160
BsrFI	RCCGGY	1 cut(s)	211
BsrI	ACTGG	1 cut(s)	281
BssAI	RCCGGY	1 cut(s)	211
BssECI	CCNNGG	2 cut(s)	135, 294
Bst2UI	CCWGG	2 cut(s)	152, 333
Bst4CI	ACNGT	6 cut(s)	15, 89, 203, 302, 307, 376
BstC8I	GCNNGC	2 cut(s)	37, 163
BstF5I	GGATG	2 cut(s)	93, 285
BstNI	CCWGG	2 cut(s)	152, 333
BstSCI	CCNGG	3 cut(s)	135, 150, 331
BstSFI	CTRYAG	1 cut(s)	156
BstV1I	GCAGC	4 cut(s)	68, 142, 170, 374
BsuRI	GGCC	2 cut(s)	68, 78
BtsCI	GGATG	2 cut(s)	93, 285
BtsI	GCAGTG	1 cut(s)	258
BtsIMutI	CAGTG	3 cut(s)	258, 269, 372
Cac8I	GCNNGC	2 cut(s)	37, 163
Cfr10I	RCCGGY	1 cut(s)	211
Cfr13I	GGNCC	1 cut(s)	415
Csp6I	GTAC	2 cut(s)	90, 303
CspAI	ACCGGT	1 cut(s)	211
CviQI	GTAC	2 cut(s)	90, 303
EaeI	YGGCCR	1 cut(s)	76
Ecl136II	GAGCTC	1 cut(s)	329
Eco24I	GRGCYC	1 cut(s)	331
Eco47I	GGWCC	1 cut(s)	415
Eco53kI	GAGCTC	1 cut(s)	329
EcoICRI	GAGCTC	1 cut(s)	329
EcoRII	CCWGG	2 cut(s)	150, 331
EcoT38I	GRGCYC	1 cut(s)	331
FaiI	YATR	5 cut(s)	42, 174, 225, 234, 351
FaqI	GGGAC	1 cut(s)	428
FauI	CCCGC	1 cut(s)	154
Fnu4HI	GCNGC	5 cut(s)	79, 82, 156, 159, 363
FokI	GGATG	2 cut(s)	80, 292
FriOI	GRGCYC	1 cut(s)	331
Fsp4HI	GCNGC	5 cut(s)	79, 82, 156, 159, 363
GluI	GCNGC	5 cut(s)	79, 82, 156, 159, 363
GsuI	CTGGAG	1 cut(s)	315
HaeIII	GGCC	2 cut(s)	68, 78
HapII	CCGG	2 cut(s)	137, 212
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HinfI	GANTC	3 cut(s)	107, 147, 227
HpaI	GTTAAC	1 cut(s)	370
HpaII	CCGG	2 cut(s)	137, 212
HphI	GGTGA	3 cut(s)	31, 226, 377
Hpy166II	GTNNAC	1 cut(s)	370
Hpy188I	TCNGA	2 cut(s)	295, 396
Hpy8I	GTNNAC	1 cut(s)	370
Hpy99I	CGWCG	2 cut(s)	19, 34
HpyCH4III	ACNGT	6 cut(s)	15, 89, 203, 302, 307, 376
HpyCH4IV	ACGT	1 cut(s)	243
HpyCH4V	TGCA	3 cut(s)	158, 362, 462
HpySE526I	ACGT	1 cut(s)	243
KspAI	GTTAAC	1 cut(s)	370
LmnI	GCTCC	1 cut(s)	334
Lsp1109I	GCAGC	4 cut(s)	68, 142, 170, 374
MaeII	ACGT	1 cut(s)	243
MhlI	GDGCHC	1 cut(s)	331
MluCI	AATT	4 cut(s)	193, 312, 454, 470
MnlI	CCTC	4 cut(s)	58, 180, 216, 289
MseI	TTAA	2 cut(s)	192, 369
MslI	CAYNNNNRTG	1 cut(s)	377
MspA1I	CMGCKG	3 cut(s)	81, 161, 365
MspI	CCGG	2 cut(s)	137, 212
MspR9I	CCNGG	3 cut(s)	137, 152, 333
MvaI	CCWGG	2 cut(s)	152, 333
NciI	CCSGG	1 cut(s)	137
NlaIV	GGNNCC	2 cut(s)	292, 416
OliI	CACNNNNGTG	1 cut(s)	377
PfeI	GAWTC	3 cut(s)	107, 147, 227
PinAI	ACCGGT	1 cut(s)	211
PkrI	GCNGC	5 cut(s)	80, 83, 157, 160, 364
Psp124BI	GAGCTC	1 cut(s)	331
Psp6I	CCWGG	2 cut(s)	150, 331
PspGI	CCWGG	2 cut(s)	150, 331
PspN4I	GGNNCC	2 cut(s)	292, 416
PspPI	GGNCC	1 cut(s)	415
PstI	CTGCAG	1 cut(s)	160
PvuII	CAGCTG	1 cut(s)	365
RsaI	GTAC	2 cut(s)	91, 304
RsaNI	GTAC	2 cut(s)	90, 303
RseI	CAYNNNNRTG	1 cut(s)	377
SacI	GAGCTC	1 cut(s)	331
SaqAI	TTAA	2 cut(s)	192, 369
SatI	GCNGC	5 cut(s)	79, 82, 156, 159, 363
Sau96I	GGNCC	1 cut(s)	415
ScrFI	CCNGG	3 cut(s)	137, 152, 333
SduI	GDGCHC	1 cut(s)	331
SetI	ASST	7 cut(s)	41, 224, 246, 292, 331, 337, 367
SfcI	CTRYAG	1 cut(s)	156
SinI	GGWCC	1 cut(s)	415
SmiMI	CAYNNNNRTG	1 cut(s)	377
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
Sse9I	AATT	4 cut(s)	193, 312, 454, 470
SsiI	CCGC	2 cut(s)	79, 161
SstI	GAGCTC	1 cut(s)	331
StyD4I	CCNGG	3 cut(s)	135, 150, 331
TaaI	ACNGT	6 cut(s)	15, 89, 203, 302, 307, 376
TaiI	ACGT	1 cut(s)	246
TaqI	TCGA	1 cut(s)	178
TasI	AATT	4 cut(s)	193, 312, 454, 470
TauI	GCSGC	1 cut(s)	81
TfiI	GAWTC	3 cut(s)	107, 147, 227
Tru1I	TTAA	2 cut(s)	192, 369
Tru9I	TTAA	2 cut(s)	192, 369
TscAI	CASTG	3 cut(s)	258, 269, 379
TseI	GCWGC	4 cut(s)	81, 155, 158, 362
TspDTI	ATGAA	1 cut(s)	366
TspRI	CASTG	3 cut(s)	258, 269, 379
VpaK11BI	GGWCC	1 cut(s)	415
XapI	RAATTY	2 cut(s)	312, 454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.