AT3G18210

Its function is described as oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, L-ascorbic acid binding, iron ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0007038
Physical Location & Seq
Reverse (-)
6237902 .. 6240605
2704 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G18210.1

Sequence Viewer

Length: 1185 bp
ATGTCAAGTGAGCAGCGAGAAGGTTCGCAAGAGACGACGACGACGACGGTGGAAGGTAACGGAACAATTGCAGGTCAGAATTCTCATTCGGCGGCTCCCACGACATTGAGAGCTACCTCTACGATGGTTTCTTGCCAGAGACTAAGGCTAAACCCTAACAACGAGCATAGACCCGATAGTTATGAAGATCTGCAGCTTGATTTCCCAAACTCGGTATATTCTAGTCTGGAGAAGTACTTGCCTCCGAATATGCTCGTCTCGAATCGTGATGAGAAAATCAAATTCATGACTGATATTATGCTTAGGCATCTTCCTCATGGAGAGCGTTCCAGAGCTCAAAGGCACAGTGACTATAGGCTGAAGATTACAACAAATTATCAGCCACTTCACAAGGAGTTGTATACTCTAGTTCCCACAGTATGTTTCGTTCCTGCTTTCCTTAAGGCGATAAATGAAAACACAGAGGAAAGCTTCAGAAATATAATATCTGAACCGTCTCCTGGTGTTTTCGTCTTTGACATGCTCCAGCCTAGCTTTTGTGAGATGATGCTAGCCGAGATAGACAATTTTGAAAGGTGGGTGGGTGAGACCAAATTCCGGATAATGAGACCAAACACCATGAATAAATACGGTGCTGTGCTTGACGACTTTGGTCTAGACACCATGCTTGACAAACTCATGGAGGGGTTTATACGTCCCATCTCTAAAGTATTCTTCAGTGATGTGGGTGGAGCAACTCTGGACTCTCACCATGGTTTTGTTGTTGAATATGGGAAAGATAGGGATGTTGATTTAGGCTTTCATGTGGATGATTCAGAAGTAACGCTGAATGTTTGTTTGGGTAATCAATTTGTGGGAGGGGAGCTATTTTTCAGAGGCACACGGTGTGAAAAACATGTGAACACAGCAACAAAGGCAGATGAAACATATGATTATTGTCATATACCTGGACAAGCTGTGCTTCACCGTGGCCGCCACCGCCATGGTGCCAGAGCCACAACATGCGGGCATCGGGTCAATATGCTTCTATGGTGCAGAAGTTCTGTATTTAGAGAGCTCAAAACTCATCACAAGGATTTCTCCAGCTGGTGTGGAGAGTGCTTTTGTGAAAAGAGAGATGAGAAAGTGCGGTCGATTGATGCTCTAAGAAAGAAATTGTTTAAACCACGTCAAACCCAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

394

Amino Acids

45.18

Weight (kDa)

6.79

Isoelectric Point (pI)

36.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OGFOD2-like PF25238 122 - 244 7.4e-54 OGFOD2-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 62
AccB1I GGYRCC 1 cut(s) 986
AccI GTMKAC 1 cut(s) 401
AccIII TCCGGA 1 cut(s) 597
AciI CCGC 5 cut(s) 92, 973, 979, 1005, 1129
AcoI YGGCCR 1 cut(s) 970
AcsI RAATTY 3 cut(s) 79, 281, 593
AcuI CTGAAG 3 cut(s) 380, 457, 700
AdeI CACNNNGTG 2 cut(s) 885, 887
AfaI GTAC 1 cut(s) 236
AfiI CCNNNNNNNGG 3 cut(s) 211, 500, 597
AflII CTTAAG 1 cut(s) 440
AflIII ACRYGT 1 cut(s) 895
AgsI TTSAA 2 cut(s) 572, 767
AjiI CACGTC 1 cut(s) 1169
AjnI CCWGG 2 cut(s) 499, 946
AjuI GAANNNNNNNTTGG 2 cut(s) 821, 853
Alw21I GWGCWC 2 cut(s) 337, 1059
Alw26I GTCTC 6 cut(s) 26, 133, 262, 501, 581, 601
Aor13HI TCCGGA 1 cut(s) 597
AoxI GGCC 1 cut(s) 970
ApeKI GCWGC 2 cut(s) 13, 193
ApoI RAATTY 3 cut(s) 79, 281, 593
AsuHPI GGTGA 3 cut(s) 596, 740, 956
AsuNHI GCTAGC 1 cut(s) 550
BanI GGYRCC 1 cut(s) 986
BanII GRGCYC 2 cut(s) 337, 1059
Bbv12I GWGCWC 2 cut(s) 337, 1059
BbvI GCAGC 2 cut(s) 25, 205
BccI CCATC 2 cut(s) 118, 707
BciT130I CCWGG 2 cut(s) 501, 948
BcoDI GTCTC 6 cut(s) 26, 133, 262, 501, 581, 601
BfaI CTAG 5 cut(s) 222, 407, 531, 551, 656
BfmI CTRYAG 2 cut(s) 191, 352
BfrI CTTAAG 1 cut(s) 440
BfuAI ACCTGC 1 cut(s) 62
BglII AGATCT 1 cut(s) 187
BisI GCNGC 4 cut(s) 14, 93, 194, 973
BlsI GCNGC 4 cut(s) 15, 94, 195, 974
BmcAI AGTACT 1 cut(s) 236
Bme1390I CCNGG 2 cut(s) 501, 948
BmgBI CACGTC 1 cut(s) 1169
BmiI GGNNCC 2 cut(s) 96, 988
BmrFI CCNGG 2 cut(s) 501, 948
BmsI GCATC 4 cut(s) 316, 537, 1018, 1129
BmtI GCTAGC 1 cut(s) 554
BoxI GACNNNNGTC 1 cut(s) 651
BpmI CTGGAG 3 cut(s) 248, 509, 1066
Bpu10I CCTNAGC 1 cut(s) 302
BsaI GGTCTC 2 cut(s) 581, 601
BsaJI CCNNGG 3 cut(s) 751, 967, 982
BsaWI WCCGGW 1 cut(s) 597
Bsc4I CCNNNNNNNGG 3 cut(s) 211, 500, 597
BseAI TCCGGA 1 cut(s) 597
BseBI CCWGG 2 cut(s) 501, 948
BseDI CCNNGG 3 cut(s) 751, 967, 982
BseGI GGATG 2 cut(s) 790, 814
BseLI CCNNNNNNNGG 3 cut(s) 211, 500, 597
BseXI GCAGC 2 cut(s) 25, 205
BsgI GTGCAG 1 cut(s) 1054
Bsh1285I CGRYCG 1 cut(s) 1133
BshFI GGCC 1 cut(s) 972
BshNI GGYRCC 1 cut(s) 986
BsiEI CGRYCG 1 cut(s) 1133
BsiHKAI GWGCWC 2 cut(s) 337, 1059
BsiSI CCGG 1 cut(s) 598
BslFI GGGAC 1 cut(s) 681
BslI CCNNNNNNNGG 3 cut(s) 211, 500, 597
BsmAI GTCTC 6 cut(s) 26, 133, 262, 501, 581, 601
BsmBI CGTCTC 3 cut(s) 26, 262, 501
BsmFI GGGAC 1 cut(s) 681
BsnI GGCC 1 cut(s) 972
Bso31I GGTCTC 2 cut(s) 581, 601
Bsp1286I GDGCHC 2 cut(s) 337, 1059
Bsp13I TCCGGA 1 cut(s) 597
Bsp143I GATC 1 cut(s) 187
Bsp19I CCATGG 2 cut(s) 751, 982
BspACI CCGC 5 cut(s) 92, 973, 979, 1005, 1129
BspANI GGCC 1 cut(s) 972
BspEI TCCGGA 1 cut(s) 597
BspHI TCATGA 1 cut(s) 285
BspLI GGNNCC 2 cut(s) 96, 988
BspMAI CTGCAG 1 cut(s) 195
BspMI ACCTGC 1 cut(s) 62
BspOI GCTAGC 1 cut(s) 554
BspT107I GGYRCC 1 cut(s) 986
BspTI CTTAAG 1 cut(s) 440
BspTNI GGTCTC 2 cut(s) 581, 601
BssECI CCNNGG 3 cut(s) 751, 967, 982
BssMI GATC 1 cut(s) 187
BssNAI GTATAC 1 cut(s) 402
BssT1I CCWWGG 2 cut(s) 751, 982
Bst1107I GTATAC 1 cut(s) 402
Bst2UI CCWGG 2 cut(s) 501, 948
Bst4CI ACNGT 7 cut(s) 49, 347, 418, 495, 632, 885, 968
BstAFI CTTAAG 1 cut(s) 440
BstC8I GCNNGC 2 cut(s) 552, 1007
BstDEI CTNAG 3 cut(s) 143, 302, 1145
BstDSI CCRYGG 3 cut(s) 751, 967, 982
BstF5I GGATG 2 cut(s) 790, 814
BstKTI GATC 1 cut(s) 190
BstMAI GTCTC 6 cut(s) 26, 133, 262, 501, 581, 601
BstMBI GATC 1 cut(s) 187
BstMCI CGRYCG 1 cut(s) 1133
BstMWI GCNNNNNNNGC 2 cut(s) 914, 978
BstNI CCWGG 2 cut(s) 501, 948
BstNSI RCATGY 3 cut(s) 523, 899, 1005
BstPAI GACNNNNGTC 1 cut(s) 651
BstSCI CCNGG 2 cut(s) 499, 946
BstSFI CTRYAG 2 cut(s) 191, 352
BstV1I GCAGC 2 cut(s) 25, 205
BstX2I RGATCY 1 cut(s) 187
BstXI CCANNNNNNTGG 1 cut(s) 983
BstYI RGATCY 1 cut(s) 187
BstZ17I GTATAC 1 cut(s) 402
BsuRI GGCC 1 cut(s) 972
BtgI CCRYGG 3 cut(s) 751, 967, 982
BtrI CACGTC 1 cut(s) 1169
BtsCI GGATG 2 cut(s) 790, 814
BtsIMutI CAGTG 2 cut(s) 352, 724
BveI ACCTGC 1 cut(s) 62
Cac8I GCNNGC 2 cut(s) 552, 1007
CciI TCATGA 1 cut(s) 285
Csp6I GTAC 1 cut(s) 235
CviQI GTAC 1 cut(s) 235
DdeI CTNAG 3 cut(s) 143, 302, 1145
DpnI GATC 1 cut(s) 189
DpnII GATC 1 cut(s) 187
DraI TTTAAA 1 cut(s) 1162
DraIII CACNNNGTG 2 cut(s) 885, 887
EaeI YGGCCR 1 cut(s) 970
Ecl136II GAGCTC 2 cut(s) 335, 1057
Eco130I CCWWGG 2 cut(s) 751, 982
Eco24I GRGCYC 2 cut(s) 337, 1059
Eco31I GGTCTC 2 cut(s) 581, 601
Eco53kI GAGCTC 2 cut(s) 335, 1057
Eco57I CTGAAG 3 cut(s) 380, 457, 700
EcoICRI GAGCTC 2 cut(s) 335, 1057
EcoRI GAATTC 1 cut(s) 79
EcoRII CCWGG 2 cut(s) 499, 946
EcoT14I CCWWGG 2 cut(s) 751, 982
EcoT38I GRGCYC 2 cut(s) 337, 1059
ErhI CCWWGG 2 cut(s) 751, 982
Esp3I CGTCTC 3 cut(s) 26, 262, 501
FalI AAGNNNNNCTT 2 cut(s) 945, 977
FaqI GGGAC 1 cut(s) 681
FauI CCCGC 1 cut(s) 998
FauNDI CATATG 1 cut(s) 928
FblI GTMKAC 1 cut(s) 401
Fnu4HI GCNGC 4 cut(s) 14, 93, 194, 973
FokI GGATG 2 cut(s) 797, 821
FriOI GRGCYC 2 cut(s) 337, 1059
Fsp4HI GCNGC 4 cut(s) 14, 93, 194, 973
FspBI CTAG 5 cut(s) 222, 407, 531, 551, 656
GluI GCNGC 4 cut(s) 14, 93, 194, 973
GsuI CTGGAG 3 cut(s) 248, 509, 1066
HaeIII GGCC 1 cut(s) 972
HapII CCGG 1 cut(s) 598
HindIII AAGCTT 2 cut(s) 469, 1179
HinfI GANTC 3 cut(s) 262, 743, 812
HpaII CCGG 1 cut(s) 598
HphI GGTGA 3 cut(s) 596, 740, 956
Hpy166II GTNNAC 2 cut(s) 402, 901
Hpy188I TCNGA 6 cut(s) 78, 246, 476, 490, 817, 875
Hpy188III TCNNGA 8 cut(s) 227, 259, 266, 286, 330, 598, 656, 740
Hpy8I GTNNAC 2 cut(s) 402, 901
Hpy99I CGWCG 4 cut(s) 40, 43, 46, 49
HpyAV CCTTC 2 cut(s) 14, 47
HpyCH4III ACNGT 7 cut(s) 49, 347, 418, 495, 632, 885, 968
HpyCH4IV ACGT 2 cut(s) 694, 1168
HpyCH4V TGCA 3 cut(s) 71, 193, 1035
HpyF10VI GCNNNNNNNGC 2 cut(s) 914, 978
HpyF3I CTNAG 3 cut(s) 143, 302, 1145
HpySE526I ACGT 2 cut(s) 694, 1168
Kpn2I TCCGGA 1 cut(s) 597
Kzo9I GATC 1 cut(s) 187
LmnI GCTCC 4 cut(s) 100, 528, 731, 862
Lsp1109I GCAGC 2 cut(s) 25, 205
LweI GCATC 4 cut(s) 316, 537, 1018, 1129
MaeI CTAG 5 cut(s) 222, 407, 531, 551, 656
MaeII ACGT 2 cut(s) 694, 1168
MaeIII GTNAC 3 cut(s) 56, 347, 820
MalI GATC 1 cut(s) 189
MboI GATC 1 cut(s) 187
MboII GAAGA 4 cut(s) 197, 302, 373, 706
MfeI CAATTG 1 cut(s) 66
MflI RGATCY 1 cut(s) 187
MhlI GDGCHC 2 cut(s) 337, 1059
MluCI AATT 8 cut(s) 66, 79, 281, 373, 565, 593, 848, 1154
MlyI GAGTC 1 cut(s) 737
MnlI CCTC 7 cut(s) 127, 252, 324, 457, 676, 851, 869
MroI TCCGGA 1 cut(s) 597
MseI TTAA 2 cut(s) 441, 1161
MslI CAYNNNNRTG 2 cut(s) 807, 981
MspA1I CMGCKG 1 cut(s) 1086
MspCI CTTAAG 1 cut(s) 440
MspI CCGG 1 cut(s) 598
MspR9I CCNGG 2 cut(s) 501, 948
MssI GTTTAAAC 1 cut(s) 1162
MunI CAATTG 1 cut(s) 66
MvaI CCWGG 2 cut(s) 501, 948
MwoI GCNNNNNNNGC 2 cut(s) 914, 978
NcoI CCATGG 2 cut(s) 751, 982
NdeI CATATG 1 cut(s) 928
NdeII GATC 1 cut(s) 187
NheI GCTAGC 1 cut(s) 550
NlaIV GGNNCC 2 cut(s) 96, 988
NmeAIII GCCGAG 1 cut(s) 580
NmuCI GTSAC 1 cut(s) 347
NspI RCATGY 3 cut(s) 523, 899, 1005
PagI TCATGA 1 cut(s) 285
PciI ACATGT 1 cut(s) 895
PcsI WCGNNNNNNNCGW 2 cut(s) 32, 41
PfeI GAWTC 2 cut(s) 262, 812
PkrI GCNGC 4 cut(s) 15, 94, 195, 974
PleI GAGTC 1 cut(s) 737
PmeI GTTTAAAC 1 cut(s) 1162
PpsI GAGTC 1 cut(s) 737
PscI ACATGT 1 cut(s) 895
PshAI GACNNNNGTC 1 cut(s) 651
Psp124BI GAGCTC 2 cut(s) 337, 1059
Psp6I CCWGG 2 cut(s) 499, 946
PspGI CCWGG 2 cut(s) 499, 946
PspN4I GGNNCC 2 cut(s) 96, 988
PsrI GAACNNNNNNTAC 2 cut(s) 411, 443
PstI CTGCAG 1 cut(s) 195
PsuI RGATCY 1 cut(s) 187
PvuII CAGCTG 1 cut(s) 1086
RsaI GTAC 1 cut(s) 236
RsaNI GTAC 1 cut(s) 235
RseI CAYNNNNRTG 2 cut(s) 807, 981
SacI GAGCTC 2 cut(s) 337, 1059
SaqAI TTAA 2 cut(s) 441, 1161
SatI GCNGC 4 cut(s) 14, 93, 194, 973
Sau3AI GATC 1 cut(s) 187
ScaI AGTACT 1 cut(s) 236
SchI GAGTC 1 cut(s) 737
ScrFI CCNGG 2 cut(s) 501, 948
SduI GDGCHC 2 cut(s) 337, 1059
SfaNI GCATC 4 cut(s) 316, 537, 1018, 1129
SfcI CTRYAG 2 cut(s) 191, 352
SmiMI CAYNNNNRTG 2 cut(s) 807, 981
SmlI CTYRAG 1 cut(s) 440
SmoI CTYRAG 1 cut(s) 440
Sse9I AATT 8 cut(s) 66, 79, 281, 373, 565, 593, 848, 1154
SsiI CCGC 5 cut(s) 92, 973, 979, 1005, 1129
SspMI CTAG 5 cut(s) 222, 407, 531, 551, 656
SstI GAGCTC 2 cut(s) 337, 1059
StyD4I CCNGG 2 cut(s) 499, 946
StyI CCWWGG 2 cut(s) 751, 982
TaaI ACNGT 7 cut(s) 49, 347, 418, 495, 632, 885, 968
TaiI ACGT 2 cut(s) 697, 1171
TaqI TCGA 2 cut(s) 260, 1133
TasI AATT 8 cut(s) 66, 79, 281, 373, 565, 593, 848, 1154
TatI WGTACW 1 cut(s) 234
TauI GCSGC 2 cut(s) 95, 975
TfiI GAWTC 2 cut(s) 262, 812
Tru1I TTAA 2 cut(s) 441, 1161
Tru9I TTAA 2 cut(s) 441, 1161
TscAI CASTG 2 cut(s) 352, 724
TseFI GTSAC 1 cut(s) 347
TseI GCWGC 2 cut(s) 13, 193
Tsp45I GTSAC 1 cut(s) 347
TspDTI ATGAA 6 cut(s) 198, 274, 468, 635, 791, 936
TspGWI ACGGA 1 cut(s) 75
TspRI CASTG 2 cut(s) 352, 724
Vha464I CTTAAG 1 cut(s) 440
XapI RAATTY 3 cut(s) 79, 281, 593
XbaI TCTAGA 1 cut(s) 655
XceI RCATGY 3 cut(s) 523, 899, 1005
XmiI GTMKAC 1 cut(s) 401
XspI CTAG 5 cut(s) 222, 407, 531, 551, 656
ZrmI AGTACT 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.