Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0007038

Physical Location & Seq

Genomic Coordinates Forward (+)

1559160 .. 1563506

Gene Structure 4347 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG021800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGTCGGTCGACGGCCGGGACGGCCCAGCTCCGGCGGCCGGAAACGGACTGGGGAATTCGAACAATTCGGCGGCGGCGGCGGCGGCGGCGTTCGTGACGATGTCGAGCCAGCGGCTGCGGCTGAACCCTAACAAGGAGCACAAGCCGGAGAGCTACGACGACATGCAATTGGATTTCAGCCCGTCGATCTTCAGCTCTCTGGAACGGTACTTGCCGCCGAACATGCTCGGAATGCCGAGATATGATAAGGTCAAGTTCATGAGGGAGATTCTGCTCAAGTATTTGCCTCATGGAGAGCGCAACAGAGTTCAGAAGCATAGGGATTACAGGCAGAAGATCATATTGAATTACCAGCCTTTGCATAAAGAGTTATACCAGCTGGATCCTGCCACCACCTTTGTTCCTGCATTTCTAGAAGCAGTTAATGAGAATACTGAGGAAAGCTTCAAAAGGATATGTTCTGAACCCTCACCTGGAATATATACTTTTGAGATTTTTCAGCCACGGTTCTGTGAATTGTTATTAGCCGAGGTGGAGAATTTTGAAAAATGGGTCGGTGACTCCAAATATAGAATCATGCGACCAAATACAATGAATAGGTATGGTGCTGTTCTTGATGATTTTGGCCTTGAAACCATGCTTGACAAGCTTTTGGAGGGTTTTGTTCGTCCTATAGCTAAAGAGCTGTTTCCTGAGGTTGGTGGATCAACTCTGGATTCTCATCATGGGTTTGTGGTTGAATATGGTAACAATAGGGATCTTGACTTGGGTAAGTATTTTGTTTTATGGATATATAGTTTGAAGTTTATCCTTTTTTGCAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

274

Amino Acids

31.47

Weight (kDa)

5.92

Isoelectric Point (pI)

37.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OGFOD2-like	PF25238	113 - 235	2e-52	OGFOD2-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007038)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18210 AT3G18210
fragaria_vesca	FvH4_5g16830 FvH4_5g16830 FvH4_5g16830 FvH4_5g16830
malus_domestica	MD14G1231400.v1.1
prunus_persica	Prupe.5G226700_v2.0.a1 Prupe.5G226700_v2.0.a1 Prupe.5G226700_v2.0.a1 Prupe.5G226700_v2.0.a1 Prupe.5G226700_v2.0.a1 Prupe.5G226700_v2.0.a1
pyrus_communis	pycom14g19260
rosa_chinensis	RchiOBHm_Chr7g0179241
rosa_laevigata	RLG00000005370
rosa_multiflora	Rmu_sc0006939.1_g000004 Rmu_sc0009798.1_g000001
rosa_roxburghii	Rroxscaffold_3G00274190
rosa_rugosa	Rorug06G0422700
rosa_samantha	Rh7AG021900 Rh7BG021800 Rh7CG023100 Rh7DG022400
rosa_wichuraiana	Rw7G001800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	9
AclWI	GGATC	4 cut(s)	377, 390, 712, 765
AcoI	YGGCCR	2 cut(s)	13, 36
AcsI	RAATTY	2 cut(s)	55, 538
AcuI	CTGAAG	1 cut(s)	175
AfaI	GTAC	1 cut(s)	209
AfiI	CCNNNNNNNGG	5 cut(s)	31, 38, 133, 473, 698
AgsI	TTSAA	6 cut(s)	346, 448, 545, 632, 740, 802
AjnI	CCWGG	1 cut(s)	472
AluBI	AGCT	8 cut(s)	29, 153, 195, 379, 444, 649, 677, 685
AluI	AGCT	8 cut(s)	29, 153, 195, 379, 444, 649, 677, 685
Alw21I	GWGCWC	1 cut(s)	141
AlwI	GGATC	4 cut(s)	377, 390, 712, 765
AlwNI	CAGNNNCTG	1 cut(s)	115
AoxI	GGCC	4 cut(s)	13, 22, 36, 625
ApeKI	GCWGC	1 cut(s)	115
ApoI	RAATTY	2 cut(s)	55, 538
AspLEI	GCGC	1 cut(s)	300
AspS9I	GGNCC	1 cut(s)	23
AsuC2I	CCSGG	1 cut(s)	17
AsuHPI	GGTGA	2 cut(s)	462, 569
AsuII	TTCGAA	1 cut(s)	59
AxyI	CCTNAGG	1 cut(s)	693
BamHI	GGATCC	1 cut(s)	382
Bbv12I	GWGCWC	1 cut(s)	141
BbvI	GCAGC	1 cut(s)	102
BceAI	ACGGC	2 cut(s)	28, 37
BciT130I	CCWGG	1 cut(s)	474
BcnI	CCSGG	1 cut(s)	17
BfaI	CTAG	1 cut(s)	413
BfmI	CTRYAG	1 cut(s)	672
BglI	GCCNNNNNGGC	1 cut(s)	21
Bme1390I	CCNGG	2 cut(s)	17, 474
BmgT120I	GGNCC	1 cut(s)	23
BmiI	GGNNCC	1 cut(s)	384
BmrFI	CCNGG	2 cut(s)	17, 474
BmrI	ACTGGG	1 cut(s)	59
BmuI	ACTGGG	1 cut(s)	59
Bpu14I	TTCGAA	1 cut(s)	59
BpuEI	CTTGAG	1 cut(s)	260
BpuMI	CCSGG	1 cut(s)	17
BsaBI	GATNNNNATC	1 cut(s)	720
BsaJI	CCNNGG	2 cut(s)	503, 528
Bsc4I	CCNNNNNNNGG	5 cut(s)	31, 38, 133, 473, 698
Bse1I	ACTGG	1 cut(s)	54
Bse21I	CCTNAGG	1 cut(s)	693
Bse8I	GATNNNNATC	1 cut(s)	720
BseBI	CCWGG	1 cut(s)	474
BseDI	CCNNGG	2 cut(s)	503, 528
BseJI	GATNNNNATC	1 cut(s)	720
BseLI	CCNNNNNNNGG	5 cut(s)	31, 38, 133, 473, 698
BseMII	CTCAG	2 cut(s)	426, 684
BseNI	ACTGG	1 cut(s)	54
BseX3I	CGGCCG	2 cut(s)	13, 36
BseXI	GCAGC	1 cut(s)	102
BseYI	CCCAGC	1 cut(s)	25
Bsh1285I	CGRYCG	3 cut(s)	9, 16, 39
BshFI	GGCC	4 cut(s)	15, 24, 38, 627
BsiEI	CGRYCG	3 cut(s)	9, 16, 39
BsiHKAI	GWGCWC	1 cut(s)	141
BsiSI	CCGG	4 cut(s)	16, 32, 39, 146
BslFI	GGGAC	1 cut(s)	32
BslI	CCNNNNNNNGG	5 cut(s)	31, 38, 133, 473, 698
BsmFI	GGGAC	1 cut(s)	32
BsmI	GAATGC	1 cut(s)	237
BsnI	GGCC	4 cut(s)	15, 24, 38, 627
Bsp119I	TTCGAA	1 cut(s)	59
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp143I	GATC	5 cut(s)	186, 336, 382, 704, 757
BspANI	GGCC	4 cut(s)	15, 24, 38, 627
BspCNI	CTCAG	2 cut(s)	427, 685
BspHI	TCATGA	1 cut(s)	258
BspLI	GGNNCC	1 cut(s)	384
BspPI	GGATC	4 cut(s)	377, 390, 712, 765
BspT104I	TTCGAA	1 cut(s)	59
BsrI	ACTGG	1 cut(s)	54
BssECI	CCNNGG	2 cut(s)	503, 528
BssMI	GATC	5 cut(s)	186, 336, 382, 704, 757
Bst2UI	CCWGG	1 cut(s)	474
Bst4CI	ACNGT	2 cut(s)	207, 507
BstBI	TTCGAA	1 cut(s)	59
BstC8I	GCNNGC	1 cut(s)	110
BstDEI	CTNAG	2 cut(s)	435, 693
BstDSI	CCRYGG	1 cut(s)	503
BstHHI	GCGC	1 cut(s)	300
BstKTI	GATC	5 cut(s)	189, 339, 385, 707, 760
BstMBI	GATC	5 cut(s)	186, 336, 382, 704, 757
BstMCI	CGRYCG	3 cut(s)	9, 16, 39
BstNI	CCWGG	1 cut(s)	474
BstNSI	RCATGY	2 cut(s)	166, 226
BstSCI	CCNGG	2 cut(s)	15, 472
BstSFI	CTRYAG	1 cut(s)	672
BstV1I	GCAGC	1 cut(s)	102
BstX2I	RGATCY	2 cut(s)	382, 757
BstYI	RGATCY	2 cut(s)	382, 757
BstZI	CGGCCG	2 cut(s)	13, 36
Bsu36I	CCTNAGG	1 cut(s)	693
BsuRI	GGCC	4 cut(s)	15, 24, 38, 627
BtgI	CCRYGG	1 cut(s)	503
Cac8I	GCNNGC	1 cut(s)	110
CaiI	CAGNNNCTG	1 cut(s)	115
CciI	TCATGA	1 cut(s)	258
CfoI	GCGC	1 cut(s)	300
Cfr13I	GGNCC	1 cut(s)	23
Csp6I	GTAC	1 cut(s)	208
CspCI	CAANNNNNGTGG	2 cut(s)	379, 414
CviAII	CATG	7 cut(s)	163, 223, 259, 290, 577, 637, 725
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	2 cut(s)	435, 693
DpnI	GATC	5 cut(s)	188, 338, 384, 706, 759
DpnII	GATC	5 cut(s)	186, 336, 382, 704, 757
EaeI	YGGCCR	2 cut(s)	13, 36
EagI	CGGCCG	2 cut(s)	13, 36
EclXI	CGGCCG	2 cut(s)	13, 36
Eco52I	CGGCCG	2 cut(s)	13, 36
Eco57I	CTGAAG	1 cut(s)	175
Eco81I	CCTNAGG	1 cut(s)	693
EcoRI	GAATTC	1 cut(s)	55
EcoRII	CCWGG	1 cut(s)	472
FaeI	CATG	7 cut(s)	166, 226, 262, 293, 580, 640, 728
FaqI	GGGAC	1 cut(s)	32
FatI	CATG	7 cut(s)	162, 222, 258, 289, 576, 636, 724
FblI	GTMKAC	1 cut(s)	9
FspBI	CTAG	1 cut(s)	413
GlaI	GCGC	1 cut(s)	299
GsaI	CCCAGC	1 cut(s)	29
HaeIII	GGCC	4 cut(s)	15, 24, 38, 627
HapII	CCGG	4 cut(s)	16, 32, 39, 146
HhaI	GCGC	1 cut(s)	300
Hin1II	CATG	7 cut(s)	166, 226, 262, 293, 580, 640, 728
Hin6I	GCGC	1 cut(s)	298
HinP1I	GCGC	1 cut(s)	298
HincII	GTYRAC	1 cut(s)	10
HindII	GTYRAC	1 cut(s)	10
HindIII	AAGCTT	2 cut(s)	442, 647
HinfI	GANTC	4 cut(s)	268, 560, 573, 716
HpaII	CCGG	4 cut(s)	16, 32, 39, 146
HphI	GGTGA	2 cut(s)	462, 569
Hpy166II	GTNNAC	1 cut(s)	10
Hpy188I	TCNGA	3 cut(s)	230, 312, 463
Hpy188III	TCNNGA	8 cut(s)	94, 200, 259, 413, 614, 692, 713, 761
Hpy8I	GTNNAC	1 cut(s)	10
Hpy99I	CGWCG	3 cut(s)	14, 161, 187
HpyCH4III	ACNGT	2 cut(s)	207, 507
HpyCH4V	TGCA	4 cut(s)	166, 361, 407, 819
HpyF3I	CTNAG	2 cut(s)	435, 693
Hsp92II	CATG	7 cut(s)	166, 226, 262, 293, 580, 640, 728
HspAI	GCGC	1 cut(s)	298
Kzo9I	GATC	5 cut(s)	186, 336, 382, 704, 757
LmnI	GCTCC	2 cut(s)	34, 136
Lsp1109I	GCAGC	1 cut(s)	102
MaeI	CTAG	1 cut(s)	413
MaeIII	GTNAC	3 cut(s)	94, 557, 746
MalI	GATC	5 cut(s)	188, 338, 384, 706, 759
MboI	GATC	5 cut(s)	186, 336, 382, 704, 757
MboII	GAAGA	2 cut(s)	181, 346
MfeI	CAATTG	1 cut(s)	167
MflI	RGATCY	2 cut(s)	382, 757
MhlI	GDGCHC	1 cut(s)	141
MluCI	AATT	6 cut(s)	55, 64, 167, 346, 515, 538
MlyI	GAGTC	1 cut(s)	554
MnlI	CCTC	7 cut(s)	255, 297, 430, 478, 523, 649, 688
MseI	TTAA	2 cut(s)	423, 823
MspA1I	CMGCKG	2 cut(s)	112, 379
MspI	CCGG	4 cut(s)	16, 32, 39, 146
MspR9I	CCNGG	2 cut(s)	17, 474
MunI	CAATTG	1 cut(s)	167
Mva1269I	GAATGC	1 cut(s)	237
MvaI	CCWGG	1 cut(s)	474
NciI	CCSGG	1 cut(s)	17
NdeII	GATC	5 cut(s)	186, 336, 382, 704, 757
NlaIII	CATG	7 cut(s)	166, 226, 262, 293, 580, 640, 728
NlaIV	GGNNCC	1 cut(s)	384
NmeAIII	GCCGAG	2 cut(s)	261, 553
NmuCI	GTSAC	2 cut(s)	94, 557
NspI	RCATGY	2 cut(s)	166, 226
NspV	TTCGAA	1 cut(s)	59
PagI	TCATGA	1 cut(s)	258
PctI	GAATGC	1 cut(s)	237
PfeI	GAWTC	3 cut(s)	268, 573, 716
PflFI	GACNNNGTC	1 cut(s)	100
PleI	GAGTC	1 cut(s)	554
PpsI	GAGTC	1 cut(s)	554
Psp6I	CCWGG	1 cut(s)	472
PspFI	CCCAGC	1 cut(s)	25
PspGI	CCWGG	1 cut(s)	472
PspN4I	GGNNCC	1 cut(s)	384
PspPI	GGNCC	1 cut(s)	23
PstNI	CAGNNNCTG	1 cut(s)	115
PsuI	RGATCY	2 cut(s)	382, 757
PsyI	GACNNNGTC	1 cut(s)	100
PvuII	CAGCTG	1 cut(s)	379
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
SalI	GTCGAC	1 cut(s)	8
SaqAI	TTAA	2 cut(s)	423, 823
Sau3AI	GATC	5 cut(s)	186, 336, 382, 704, 757
Sau96I	GGNCC	1 cut(s)	23
SchI	GAGTC	1 cut(s)	554
ScrFI	CCNGG	2 cut(s)	17, 474
SduI	GDGCHC	1 cut(s)	141
SfcI	CTRYAG	1 cut(s)	672
SfiI	GGCCNNNNNGGCC	1 cut(s)	21
SfuI	TTCGAA	1 cut(s)	59
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
Sse9I	AATT	6 cut(s)	55, 64, 167, 346, 515, 538
SspMI	CTAG	1 cut(s)	413
StyD4I	CCNGG	2 cut(s)	15, 472
TaaI	ACNGT	2 cut(s)	207, 507
TaqI	TCGA	4 cut(s)	9, 59, 104, 185
TasI	AATT	6 cut(s)	55, 64, 167, 346, 515, 538
TfiI	GAWTC	3 cut(s)	268, 573, 716
Tru1I	TTAA	2 cut(s)	423, 823
Tru9I	TTAA	2 cut(s)	423, 823
TseFI	GTSAC	2 cut(s)	94, 557
TseI	GCWGC	1 cut(s)	115
Tsp45I	GTSAC	2 cut(s)	94, 557
TspDTI	ATGAA	2 cut(s)	247, 608
TspGWI	ACGGA	1 cut(s)	60
Tth111I	GACNNNGTC	1 cut(s)	100
XapI	RAATTY	2 cut(s)	55, 538
XbaI	TCTAGA	1 cut(s)	412
XceI	RCATGY	2 cut(s)	166, 226
XmiI	GTMKAC	1 cut(s)	9
XspI	CTAG	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.