AT3G18620

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0011940
Physical Location & Seq
Forward (+)
6408261 .. 6411064
2804 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G18620.1

Sequence Viewer

Length: 1038 bp
ATGGAAGATTCTTCCCAGGGGAGTTTTGTTGCAACCATAAATGAGGATTATGAAGCAATTTGTTGGGGCTGTGGGCTAAACCTTGTTCTTCCATCATATGCACCTGTTTTTAAGTGTGGATGGTGTGGTGCAATCACGAATCAGAATCCAGTCAGACCTGAAACCAAAAGCTTTGGGTTGAGACGTTTCCGTGACCGGTGTTTTGTCGTTATTCTTGCAGTTTTTATGCTCTTTGTGATATGTGGTGGGATTTGGGCTGCATATCCCGTCTTGTTTTCGATCAGCTTGGCTTGCGGAATTTTCCATTCTGTTACAACAGCGACTCTGGCGATATCAACGCTCTCAACATTTATTCTCGTTGCTTTTAAATGTGCCGGGAAGCCAACAAATATTCTTTATGGAACCCACCCTGGAGTAGGGAATGGTGCACTTAACAACTATACCTTTTGTAACTACTGCTCCAAACCCAAGTCACCTAGAACCCATCACTGCCGCACGTGTGGCATGTGTGTATTGGACATGGATCACCATTGCCCCTTTATTGGGAACTGTGTTGGTGCGGGTAATCACAAATACTTCATAGCATTCCTTATCTCAGCCGTCATTAGCACAAGCTATGCTGCTGTTATGTGTGTGTATACCTTGATTCATATCTTGCCACCTATTGAAAAAGGAGCTGCATATGCATCCGATGTGGCCCATGTGGCGCATGGTAATAGTATATCGATTCTGAGAGTGGTGAAGAATATATGTCTTACTTACATAGCCAACGCTGTCTTCATCTCTGTTCGAAGCCTTGTTCTAGTCTATCTCTTTGTGGCGAGTGTTTCTGTGGCGATTGGGCTAAGTGTTTTGCTGTGGCAACAGCTTAGCTATATCTATGAAGGCAAGACTTACTTGAGCCATTTGAGTTCTCAAGGAACAGAAGAAGATGGTGAAAAAAGCTGCCGGAATCTTTTGACTTTTTTCGGGTGTCCACATTCAATTGAAAGGCACTTGCCAACCATAAGGAACTTGAGGAAGAGACATAAGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHHC

Protein Analysis

345

Amino Acids

37.86

Weight (kDa)

8.8

Isoelectric Point (pI)

40.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 146 - 303 5.9e-30 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011940)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18620
fragaria_vesca FvH4_4g36750
malus_domestica MD13G1007300.v1.1 MD13G1007400.v1.1 MD16G1000700.v1.1
prunus_persica Prupe.1G345600_v2.0.a1 Prupe.1G345600_v2.0.a1
pyrus_communis pycom13g00620 pycom16g00470
rosa_chinensis RchiOBHm_Chr4g0446471
rosa_laevigata RLG00000005658 RLG00000025803
rosa_roxburghii Rroxscaffold_5G00386910
rosa_rugosa Rorug04G0371700
rosa_samantha Rh4AG433300 Rh4BG442500 Rh4CG459800 Rh4DG441200
rosa_wichuraiana Rw4G037020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 638
AciI CCGC 3 cut(s) 294, 493, 560
AclWI GGATC 1 cut(s) 531
AcsI RAATTY 1 cut(s) 297
AcvI CACGTG 1 cut(s) 498
AfiI CCNNNNNNNGG 3 cut(s) 416, 542, 543
AflIII ACRYGT 1 cut(s) 497
AgeI ACCGGT 1 cut(s) 195
AgsI TTSAA 3 cut(s) 668, 984, 989
AjnI CCWGG 2 cut(s) 15, 409
AjuI GAANNNNNNNTTGG 2 cut(s) 761, 793
AluBI AGCT 7 cut(s) 171, 285, 615, 677, 868, 873, 945
AluI AGCT 7 cut(s) 171, 285, 615, 677, 868, 873, 945
Alw21I GWGCWC 1 cut(s) 430
Alw26I GTCTC 2 cut(s) 175, 1018
Alw44I GTGCAC 1 cut(s) 426
AlwI GGATC 1 cut(s) 531
AoxI GGCC 1 cut(s) 696
ApaLI GTGCAC 1 cut(s) 426
ApeKI GCWGC 4 cut(s) 257, 620, 677, 945
ApoI RAATTY 1 cut(s) 297
ArsI GACNNNNNNTTYG 2 cut(s) 185, 217
AsiGI ACCGGT 1 cut(s) 195
AspLEI GCGC 1 cut(s) 709
AspS9I GGNCC 1 cut(s) 697
AsuC2I CCSGG 1 cut(s) 376
AsuHPI GGTGA 4 cut(s) 465, 518, 751, 947
AsuII TTCGAA 1 cut(s) 790
BaeGI GKGCMC 1 cut(s) 430
BbrPI CACGTG 1 cut(s) 498
BbsI GAAGAC 1 cut(s) 769
Bbv12I GWGCWC 1 cut(s) 430
BbvI GCAGC 4 cut(s) 244, 607, 664, 932
BccI CCATC 4 cut(s) 100, 114, 492, 926
BceAI ACGGC 1 cut(s) 584
BciT130I CCWGG 2 cut(s) 17, 411
BcnI CCSGG 1 cut(s) 376
BcoDI GTCTC 2 cut(s) 175, 1018
BfaI CTAG 2 cut(s) 477, 803
BglI GCCNNNNNGGC 1 cut(s) 704
BisI GCNGC 5 cut(s) 258, 493, 621, 678, 946
BlpI GCTNAGC 1 cut(s) 869
BlsI GCNGC 5 cut(s) 259, 494, 622, 679, 947
Bme1390I CCNGG 3 cut(s) 17, 376, 411
BmgT120I GGNCC 1 cut(s) 697
BmiI GGNNCC 1 cut(s) 403
BmrFI CCNGG 3 cut(s) 17, 376, 411
BmsI GCATC 1 cut(s) 695
BpiI GAAGAC 1 cut(s) 769
BpmI CTGGAG 1 cut(s) 432
Bpu1102I GCTNAGC 1 cut(s) 869
Bpu14I TTCGAA 1 cut(s) 790
BpuEI CTTGAG 3 cut(s) 900, 919, 1036
BpuMI CCSGG 1 cut(s) 376
Bsa29I ATCGAT 1 cut(s) 725
BsaAI YACGTR 1 cut(s) 498
BsaBI GATNNNNATC 1 cut(s) 650
BsaJI CCNNGG 3 cut(s) 15, 16, 409
BsaWI WCCGGW 1 cut(s) 195
BsaXI ACNNNNNCTCC 2 cut(s) 443, 473
Bsc4I CCNNNNNNNGG 3 cut(s) 416, 542, 543
Bse118I RCCGGY 1 cut(s) 195
Bse1I ACTGG 1 cut(s) 149
Bse3DI GCAATG 1 cut(s) 529
Bse8I GATNNNNATC 1 cut(s) 650
BseBI CCWGG 2 cut(s) 17, 411
BseCI ATCGAT 1 cut(s) 725
BseDI CCNNGG 3 cut(s) 15, 16, 409
BseGI GGATG 2 cut(s) 125, 686
BseJI GATNNNNATC 1 cut(s) 650
BseLI CCNNNNNNNGG 3 cut(s) 416, 542, 543
BseMI GCAATG 1 cut(s) 529
BseMII CTCAG 2 cut(s) 609, 722
BseNI ACTGG 1 cut(s) 149
BseSI GKGCMC 1 cut(s) 430
BseXI GCAGC 4 cut(s) 244, 607, 664, 932
BshFI GGCC 1 cut(s) 698
BshTI ACCGGT 1 cut(s) 195
BshVI ATCGAT 1 cut(s) 725
BsiHKAI GWGCWC 1 cut(s) 430
BsiSI CCGG 3 cut(s) 196, 375, 949
BslI CCNNNNNNNGG 3 cut(s) 416, 542, 543
BsmAI GTCTC 2 cut(s) 175, 1018
BsmBI CGTCTC 1 cut(s) 175
BsmI GAATGC 1 cut(s) 584
BsnI GGCC 1 cut(s) 698
Bsp119I TTCGAA 1 cut(s) 790
Bsp1286I GDGCHC 1 cut(s) 430
Bsp143I GATC 2 cut(s) 279, 523
Bsp1720I GCTNAGC 1 cut(s) 869
BspACI CCGC 3 cut(s) 294, 493, 560
BspANI GGCC 1 cut(s) 698
BspCNI CTCAG 2 cut(s) 608, 723
BspDI ATCGAT 1 cut(s) 725
BspLI GGNNCC 1 cut(s) 403
BspPI GGATC 1 cut(s) 531
BspT104I TTCGAA 1 cut(s) 790
BsrDI GCAATG 1 cut(s) 529
BsrFI RCCGGY 1 cut(s) 195
BsrI ACTGG 1 cut(s) 149
BssAI RCCGGY 1 cut(s) 195
BssECI CCNNGG 3 cut(s) 15, 16, 409
BssMI GATC 2 cut(s) 279, 523
BssNAI GTATAC 1 cut(s) 639
Bst1107I GTATAC 1 cut(s) 639
Bst2UI CCWGG 2 cut(s) 17, 411
Bst4CI ACNGT 1 cut(s) 551
Bst6I CTCTTC 1 cut(s) 1016
BstBAI YACGTR 1 cut(s) 498
BstBI TTCGAA 1 cut(s) 790
BstC8I GCNNGC 1 cut(s) 292
BstDEI CTNAG 4 cut(s) 595, 731, 845, 869
BstENI CCTNNNNNAGG 1 cut(s) 414
BstF5I GGATG 2 cut(s) 125, 686
BstHHI GCGC 1 cut(s) 709
BstKTI GATC 2 cut(s) 282, 526
BstMAI GTCTC 2 cut(s) 175, 1018
BstMBI GATC 2 cut(s) 279, 523
BstMWI GCNNNNNNNGC 5 cut(s) 291, 326, 501, 683, 704
BstNI CCWGG 2 cut(s) 17, 411
BstNSI RCATGY 1 cut(s) 508
BstSCI CCNGG 3 cut(s) 15, 374, 409
BstSLI GKGCMC 1 cut(s) 430
BstV1I GCAGC 4 cut(s) 244, 607, 664, 932
BstV2I GAAGAC 1 cut(s) 769
BstZ17I GTATAC 1 cut(s) 639
Bsu15I ATCGAT 1 cut(s) 725
BsuRI GGCC 1 cut(s) 698
BsuTUI ATCGAT 1 cut(s) 725
BtsCI GGATG 2 cut(s) 125, 686
BtsI GCAGTG 1 cut(s) 487
BtsIMutI CAGTG 1 cut(s) 487
Cac8I GCNNGC 1 cut(s) 292
CfoI GCGC 1 cut(s) 709
Cfr10I RCCGGY 1 cut(s) 195
Cfr13I GGNCC 1 cut(s) 697
ClaI ATCGAT 1 cut(s) 725
CspAI ACCGGT 1 cut(s) 195
CviAII CATG 5 cut(s) 505, 520, 701, 710, 1035
DdeI CTNAG 4 cut(s) 595, 731, 845, 869
DpnI GATC 2 cut(s) 281, 525
DpnII GATC 2 cut(s) 279, 523
DraI TTTAAA 1 cut(s) 367
Eam1104I CTCTTC 1 cut(s) 1016
EarI CTCTTC 1 cut(s) 1016
Eco32I GATATC 1 cut(s) 333
Eco72I CACGTG 1 cut(s) 498
EcoNI CCTNNNNNAGG 1 cut(s) 414
EcoRII CCWGG 2 cut(s) 15, 409
EcoRV GATATC 1 cut(s) 333
EcoT22I ATGCAT 1 cut(s) 688
Esp3I CGTCTC 1 cut(s) 175
FaeI CATG 5 cut(s) 508, 523, 704, 713, 1038
FalI AAGNNNNNCTT 2 cut(s) 881, 913
FatI CATG 5 cut(s) 504, 519, 700, 709, 1034
FauI CCCGC 1 cut(s) 553
FauNDI CATATG 2 cut(s) 97, 682
FblI GTMKAC 1 cut(s) 638
Fnu4HI GCNGC 5 cut(s) 258, 493, 621, 678, 946
FokI GGATG 2 cut(s) 132, 673
Fsp4HI GCNGC 5 cut(s) 258, 493, 621, 678, 946
FspBI CTAG 2 cut(s) 477, 803
GlaI GCGC 1 cut(s) 708
GluI GCNGC 5 cut(s) 258, 493, 621, 678, 946
GsuI CTGGAG 1 cut(s) 432
HaeIII GGCC 1 cut(s) 698
HapII CCGG 3 cut(s) 196, 375, 949
HhaI GCGC 1 cut(s) 709
Hin1II CATG 5 cut(s) 508, 523, 704, 713, 1038
Hin6I GCGC 1 cut(s) 707
HinP1I GCGC 1 cut(s) 707
HindIII AAGCTT 1 cut(s) 169
HinfI GANTC 7 cut(s) 8, 139, 145, 322, 646, 727, 952
HpaII CCGG 3 cut(s) 196, 375, 949
HphI GGTGA 4 cut(s) 465, 518, 751, 947
Hpy166II GTNNAC 3 cut(s) 428, 639, 977
Hpy188I TCNGA 4 cut(s) 144, 155, 691, 732
Hpy188III TCNNGA 1 cut(s) 136
Hpy8I GTNNAC 3 cut(s) 428, 639, 977
HpyAV CCTTC 1 cut(s) 878
HpyCH4III ACNGT 1 cut(s) 551
HpyCH4IV ACGT 2 cut(s) 184, 497
HpyCH4V TGCA 8 cut(s) 32, 101, 131, 218, 260, 428, 680, 686
HpyF10VI GCNNNNNNNGC 5 cut(s) 291, 326, 501, 683, 704
HpyF3I CTNAG 4 cut(s) 595, 731, 845, 869
HpySE526I ACGT 2 cut(s) 184, 497
Hsp92II CATG 5 cut(s) 508, 523, 704, 713, 1038
HspAI GCGC 1 cut(s) 707
Kzo9I GATC 2 cut(s) 279, 523
LmnI GCTCC 2 cut(s) 464, 674
Lsp1109I GCAGC 4 cut(s) 244, 607, 664, 932
LweI GCATC 1 cut(s) 695
MaeI CTAG 2 cut(s) 477, 803
MaeII ACGT 2 cut(s) 184, 497
MaeIII GTNAC 4 cut(s) 191, 310, 449, 471
MalI GATC 2 cut(s) 281, 525
MboI GATC 2 cut(s) 279, 523
MboII GAAGA 8 cut(s) 3, 17, 80, 754, 769, 938, 941, 1033
MfeI CAATTG 1 cut(s) 984
MhlI GDGCHC 1 cut(s) 430
MluCI AATT 3 cut(s) 57, 297, 984
MlyI GAGTC 1 cut(s) 316
MnlI CCTC 2 cut(s) 37, 1011
Mph1103I ATGCAT 1 cut(s) 688
MseI TTAA 3 cut(s) 111, 366, 432
MspI CCGG 3 cut(s) 196, 375, 949
MspR9I CCNGG 3 cut(s) 17, 376, 411
MunI CAATTG 1 cut(s) 984
Mva1269I GAATGC 1 cut(s) 584
MvaI CCWGG 2 cut(s) 17, 411
MwoI GCNNNNNNNGC 5 cut(s) 291, 326, 501, 683, 704
NciI CCSGG 1 cut(s) 376
NdeI CATATG 2 cut(s) 97, 682
NdeII GATC 2 cut(s) 279, 523
NlaIII CATG 5 cut(s) 508, 523, 704, 713, 1038
NlaIV GGNNCC 1 cut(s) 403
NmuCI GTSAC 2 cut(s) 191, 471
NsiI ATGCAT 1 cut(s) 688
NspI RCATGY 1 cut(s) 508
NspV TTCGAA 1 cut(s) 790
PasI CCCWGGG 1 cut(s) 16
PctI GAATGC 1 cut(s) 584
PfeI GAWTC 6 cut(s) 8, 139, 145, 646, 727, 952
PinAI ACCGGT 1 cut(s) 195
PkrI GCNGC 5 cut(s) 259, 494, 622, 679, 947
PleI GAGTC 1 cut(s) 316
PmaCI CACGTG 1 cut(s) 498
PmlI CACGTG 1 cut(s) 498
PpsI GAGTC 1 cut(s) 316
Ppu21I YACGTR 1 cut(s) 498
Psp6I CCWGG 2 cut(s) 15, 409
PspCI CACGTG 1 cut(s) 498
PspGI CCWGG 2 cut(s) 15, 409
PspN4I GGNNCC 1 cut(s) 403
PspPI GGNCC 1 cut(s) 697
SaqAI TTAA 3 cut(s) 111, 366, 432
SatI GCNGC 5 cut(s) 258, 493, 621, 678, 946
Sau3AI GATC 2 cut(s) 279, 523
Sau96I GGNCC 1 cut(s) 697
SchI GAGTC 1 cut(s) 316
ScrFI CCNGG 3 cut(s) 17, 376, 411
SduI GDGCHC 1 cut(s) 430
SfaNI GCATC 1 cut(s) 695
SfuI TTCGAA 1 cut(s) 790
SmlI CTYRAG 3 cut(s) 898, 915, 1015
SmoI CTYRAG 3 cut(s) 898, 915, 1015
Sse9I AATT 3 cut(s) 57, 297, 984
SsiI CCGC 3 cut(s) 294, 493, 560
SspI AATATT 1 cut(s) 391
SspMI CTAG 2 cut(s) 477, 803
StyD4I CCNGG 3 cut(s) 15, 374, 409
TaaI ACNGT 1 cut(s) 551
TaiI ACGT 2 cut(s) 187, 500
TaqI TCGA 3 cut(s) 278, 725, 790
TasI AATT 3 cut(s) 57, 297, 984
TauI GCSGC 1 cut(s) 495
TfiI GAWTC 6 cut(s) 8, 139, 145, 646, 727, 952
Tru1I TTAA 3 cut(s) 111, 366, 432
Tru9I TTAA 3 cut(s) 111, 366, 432
TscAI CASTG 1 cut(s) 494
TseFI GTSAC 2 cut(s) 191, 471
TseI GCWGC 4 cut(s) 257, 620, 677, 945
Tsp45I GTSAC 2 cut(s) 191, 471
TspDTI ATGAA 5 cut(s) 66, 568, 638, 769, 897
TspGWI ACGGA 1 cut(s) 179
TspRI CASTG 1 cut(s) 494
VneI GTGCAC 1 cut(s) 426
XagI CCTNNNNNAGG 1 cut(s) 414
XapI RAATTY 1 cut(s) 297
XceI RCATGY 1 cut(s) 508
XcmI CCANNNNNNNNNTGG 1 cut(s) 707
XmiI GTMKAC 1 cut(s) 638
XspI CTAG 2 cut(s) 477, 803
Zsp2I ATGCAT 1 cut(s) 688
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.