FvH4_4g36750

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0011940
Physical Location & Seq
Reverse (-)
33533236 .. 33536980
3745 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g36750.t1

Sequence Viewer

Length: 1083 bp
ATGACGTCAATCTCTCGACCTGCTCCAGAGGCTTTAGCAATCATGGCTGACTTGCCCGAGGAGCATATTACATCCATCAAGGAAGAATATGATGTTCAGTGTTGGGGTTGTGGATTACACCTTCTTCTTCCATCAAATTCTCCACTTTTCAAATGTGGTTGGTGTGGAGCGTTAACAAATCAAAATGCAAGAAAACGTGATACCAAGTACATTTGGTTGAGACGCTTGCGAGATCGAATCTTTGTCTTTATCCTTCTCATATTTATGCTCTTTGTGATATGTGGTGGAGTGTGGGCGGTGCACCCTGTTCTTTTCGCTACCAGCTATTTCACTGGAATTTTCCACTCCATCATAACCTTCATATTGTCTGTAGCTACTCTTTACACATTCAGTTCTGCTGCATTCAAGTGTGCTGGAACACCTCCATTCATAGTCTGGGGCAGCTATCCAGCTGTGGGGAAAGGTGGCCTTGAGAATTATACCTTCTGTAACCTCTGCTCAAAGCCCAAGTCTCCAAGAACTCATCACTGCCGGACCTGCGGAAAGTGTATATTGGACATGGATCACCACTGCCCATTTATTGGGAATTGTGTTGGTGCTGATAATCACCCCCACTTCATTGCCTTACTTATTTCAGTTATTATTGGTACAACATATGTGTCTGTCATGGCTGTATATGTATGTTTCCAAATATGGCCATCCATAACATTCGAAAGCATCAGCAGCTTTAATGTGTACAGCACTGAGTTCGCTATGAGATATGCCAGGGTGCTTCTTATGGGTTTGCTAAGATCTGTAGTGTTTTTGGAGCCTAGAGGGCTTGTTCTAGTATATCTCTTAATTTCAAGTGTTTCATTGGGGATAGGGTTGTTCATACTTCTGTGGCAGCAGCTCTGTTATATATATGAGGGGAAAACCTACTTGAGTGATTTAAGCTCACAAGGCAGCGATGACGTTGGAGAGAAGGATTGCCAAAATATTTTGCGTTTCTTTGGATGGCCATATTCTTTCTCAAGATACATGCCTCTCTGGTCTATTTCAAGATTTCTGCCAAGTTTCCATAAGAAGAGACATGCAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHHC

Protein Analysis

361

Amino Acids

40.79

Weight (kDa)

8.8

Isoelectric Point (pI)

40.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 160 - 309 3.7e-30 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011940)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18620
fragaria_vesca FvH4_4g36750
malus_domestica MD13G1007300.v1.1 MD13G1007400.v1.1 MD16G1000700.v1.1
prunus_persica Prupe.1G345600_v2.0.a1 Prupe.1G345600_v2.0.a1
pyrus_communis pycom13g00620 pycom16g00470
rosa_chinensis RchiOBHm_Chr4g0446471
rosa_laevigata RLG00000005658 RLG00000025803
rosa_roxburghii Rroxscaffold_5G00386910
rosa_rugosa Rorug04G0371700
rosa_samantha Rh4AG433300 Rh4BG442500 Rh4CG459800 Rh4DG441200
rosa_wichuraiana Rw4G037020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 8
Acc36I ACCTGC 2 cut(s) 28, 545
AccB7I CCANNNNNTGG 1 cut(s) 581
AciI CCGC 2 cut(s) 296, 540
AclWI GGATC 1 cut(s) 570
AcoI YGGCCR 2 cut(s) 695, 998
AcsI RAATTY 2 cut(s) 136, 336
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 3 cut(s) 209, 649, 737
AfiI CCNNNNNNNGG 2 cut(s) 455, 581
AgsI TTSAA 4 cut(s) 151, 406, 846, 1041
AjnI CCWGG 1 cut(s) 764
AluBI AGCT 7 cut(s) 324, 374, 444, 452, 726, 892, 936
AluI AGCT 7 cut(s) 324, 374, 444, 452, 726, 892, 936
Alw21I GWGCWC 1 cut(s) 303
Alw26I GTCTC 3 cut(s) 214, 516, 1063
Alw44I GTGCAC 1 cut(s) 299
AlwI GGATC 1 cut(s) 570
Ama87I CYCGRG 1 cut(s) 56
AoxI GGCC 3 cut(s) 466, 695, 998
ApaLI GTGCAC 1 cut(s) 299
ApeKI GCWGC 6 cut(s) 398, 441, 723, 886, 889, 945
ApoI RAATTY 2 cut(s) 136, 336
ArsI GACNNNNNNTTYG 2 cut(s) 494, 526
AspS9I GGNCC 1 cut(s) 534
AsuHPI GGTGA 2 cut(s) 557, 599
AsuII TTCGAA 1 cut(s) 711
AvaI CYCGRG 1 cut(s) 56
AvaII GGWCC 1 cut(s) 534
BaeGI GKGCMC 1 cut(s) 303
BalI TGGCCA 2 cut(s) 697, 1000
Bbv12I GWGCWC 1 cut(s) 303
BbvI GCAGC 6 cut(s) 385, 453, 735, 898, 901, 957
BccI CCATC 5 cut(s) 83, 139, 356, 706, 990
BcgI CGANNNNNNTGC 2 cut(s) 730, 764
BciT130I CCWGG 1 cut(s) 766
BcoDI GTCTC 3 cut(s) 214, 516, 1063
BfaI CTAG 2 cut(s) 813, 827
BfmI CTRYAG 2 cut(s) 369, 795
BfuAI ACCTGC 2 cut(s) 28, 545
BglI GCCNNNNNGGC 1 cut(s) 817
BglII AGATCT 1 cut(s) 791
BisI GCNGC 6 cut(s) 399, 442, 724, 887, 890, 946
BlsI GCNGC 6 cut(s) 400, 443, 725, 888, 891, 947
Bme1390I CCNGG 1 cut(s) 766
Bme18I GGWCC 1 cut(s) 534
BmeT110I CYCGRG 1 cut(s) 56
BmgT120I GGNCC 1 cut(s) 534
BmiI GGNNCC 1 cut(s) 810
BmrFI CCNGG 1 cut(s) 766
BmsI GCATC 1 cut(s) 726
BpmI CTGGAG 1 cut(s) 9
Bpu14I TTCGAA 1 cut(s) 711
BpuEI CTTGAG 3 cut(s) 491, 943, 997
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 2 cut(s) 57, 765
Bsc4I CCNNNNNNNGG 2 cut(s) 455, 581
Bse1I ACTGG 1 cut(s) 337
Bse3DI GCAATG 1 cut(s) 618
BseBI CCWGG 1 cut(s) 766
BseDI CCNNGG 2 cut(s) 57, 765
BseGI GGATG 3 cut(s) 71, 698, 1001
BseLI CCNNNNNNNGG 2 cut(s) 455, 581
BseMI GCAATG 1 cut(s) 618
BseMII CTCAG 1 cut(s) 735
BseNI ACTGG 1 cut(s) 337
BseRI GAGGAG 1 cut(s) 74
BseSI GKGCMC 1 cut(s) 303
BseXI GCAGC 6 cut(s) 385, 453, 735, 898, 901, 957
BshFI GGCC 3 cut(s) 468, 697, 1000
BsiHKAI GWGCWC 1 cut(s) 303
BsiHKCI CYCGRG 1 cut(s) 56
BsiSI CCGG 1 cut(s) 532
BslI CCNNNNNNNGG 2 cut(s) 455, 581
BsmAI GTCTC 3 cut(s) 214, 516, 1063
BsmBI CGTCTC 1 cut(s) 214
BsmI GAATGC 1 cut(s) 401
BsnI GGCC 3 cut(s) 468, 697, 1000
BsoBI CYCGRG 1 cut(s) 56
Bsp119I TTCGAA 1 cut(s) 711
Bsp1286I GDGCHC 1 cut(s) 303
Bsp1407I TGTACA 1 cut(s) 735
Bsp143I GATC 3 cut(s) 232, 562, 791
BspACI CCGC 2 cut(s) 296, 540
BspANI GGCC 3 cut(s) 468, 697, 1000
BspCNI CTCAG 1 cut(s) 736
BspLI GGNNCC 1 cut(s) 810
BspMI ACCTGC 2 cut(s) 28, 545
BspPI GGATC 1 cut(s) 570
BspT104I TTCGAA 1 cut(s) 711
BsrDI GCAATG 1 cut(s) 618
BsrGI TGTACA 1 cut(s) 735
BsrI ACTGG 1 cut(s) 337
BssECI CCNNGG 2 cut(s) 57, 765
BssMI GATC 3 cut(s) 232, 562, 791
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 1 cut(s) 766
Bst6I CTCTTC 1 cut(s) 1061
BstACI GRCGYC 1 cut(s) 5
BstAUI TGTACA 1 cut(s) 735
BstBI TTCGAA 1 cut(s) 711
BstC8I GCNNGC 1 cut(s) 227
BstDEI CTNAG 2 cut(s) 744, 788
BstF5I GGATG 3 cut(s) 71, 698, 1001
BstKTI GATC 3 cut(s) 235, 565, 794
BstMAI GTCTC 3 cut(s) 214, 516, 1063
BstMBI GATC 3 cut(s) 232, 562, 791
BstMWI GCNNNNNNNGC 7 cut(s) 29, 44, 61, 537, 723, 817, 942
BstNI CCWGG 1 cut(s) 766
BstNSI RCATGY 2 cut(s) 1024, 1076
BstSCI CCNGG 1 cut(s) 764
BstSFI CTRYAG 2 cut(s) 369, 795
BstSLI GKGCMC 1 cut(s) 303
BstV1I GCAGC 6 cut(s) 385, 453, 735, 898, 901, 957
BstX2I RGATCY 1 cut(s) 791
BstYI RGATCY 1 cut(s) 791
BsuRI GGCC 3 cut(s) 468, 697, 1000
BtgZI GCGATG 1 cut(s) 963
BtsCI GGATG 3 cut(s) 71, 698, 1001
BtsI GCAGTG 2 cut(s) 526, 568
BtsIMutI CAGTG 5 cut(s) 104, 330, 526, 568, 741
BveI ACCTGC 2 cut(s) 28, 545
Cac8I GCNNGC 1 cut(s) 227
Cfr13I GGNCC 1 cut(s) 534
CseI GACGC 1 cut(s) 231
Csp6I GTAC 3 cut(s) 208, 648, 736
CviAII CATG 5 cut(s) 43, 559, 667, 1021, 1073
CviQI GTAC 3 cut(s) 208, 648, 736
DdeI CTNAG 2 cut(s) 744, 788
DpnI GATC 3 cut(s) 234, 564, 793
DpnII GATC 3 cut(s) 232, 562, 791
EaeI YGGCCR 2 cut(s) 695, 998
Eam1104I CTCTTC 1 cut(s) 1061
EarI CTCTTC 1 cut(s) 1061
Eco47I GGWCC 1 cut(s) 534
Eco88I CYCGRG 1 cut(s) 56
EcoRII CCWGG 1 cut(s) 764
Esp3I CGTCTC 1 cut(s) 214
FaeI CATG 5 cut(s) 46, 562, 670, 1024, 1076
FalI AAGNNNNNCTT 2 cut(s) 453, 485
FatI CATG 5 cut(s) 42, 558, 666, 1020, 1072
FauNDI CATATG 1 cut(s) 655
Fnu4HI GCNGC 6 cut(s) 399, 442, 724, 887, 890, 946
FokI GGATG 3 cut(s) 58, 685, 1008
Fsp4HI GCNGC 6 cut(s) 399, 442, 724, 887, 890, 946
FspBI CTAG 2 cut(s) 813, 827
GluI GCNGC 6 cut(s) 399, 442, 724, 887, 890, 946
GsuI CTGGAG 1 cut(s) 9
HaeIII GGCC 3 cut(s) 468, 697, 1000
HapII CCGG 1 cut(s) 532
HgaI GACGC 1 cut(s) 231
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 5 cut(s) 46, 562, 670, 1024, 1076
HincII GTYRAC 1 cut(s) 174
HindII GTYRAC 1 cut(s) 174
HinfI GANTC 1 cut(s) 237
HpaI GTTAAC 1 cut(s) 174
HpaII CCGG 1 cut(s) 532
HphI GGTGA 2 cut(s) 557, 599
Hpy166II GTNNAC 3 cut(s) 174, 301, 736
Hpy188III TCNNGA 4 cut(s) 15, 26, 1014, 1041
Hpy8I GTNNAC 3 cut(s) 174, 301, 736
HpyAV CCTTC 5 cut(s) 131, 263, 367, 493, 958
HpyCH4IV ACGT 3 cut(s) 5, 196, 954
HpyCH4V TGCA 4 cut(s) 188, 301, 401, 1076
HpyF10VI GCNNNNNNNGC 7 cut(s) 29, 44, 61, 537, 723, 817, 942
HpyF3I CTNAG 2 cut(s) 744, 788
HpySE526I ACGT 3 cut(s) 5, 196, 954
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 5 cut(s) 46, 562, 670, 1024, 1076
KspAI GTTAAC 1 cut(s) 174
Kzo9I GATC 3 cut(s) 232, 562, 791
LmnI GCTCC 4 cut(s) 28, 61, 167, 808
Lsp1109I GCAGC 6 cut(s) 385, 453, 735, 898, 901, 957
LweI GCATC 1 cut(s) 726
MaeI CTAG 2 cut(s) 813, 827
MaeII ACGT 3 cut(s) 5, 196, 954
MaeIII GTNAC 1 cut(s) 488
MalI GATC 3 cut(s) 234, 564, 793
MboI GATC 3 cut(s) 232, 562, 791
MboII GAAGA 4 cut(s) 95, 116, 119, 1078
MflI RGATCY 1 cut(s) 791
MhlI GDGCHC 1 cut(s) 303
MlsI TGGCCA 2 cut(s) 697, 1000
MluCI AATT 5 cut(s) 136, 336, 475, 586, 840
MluNI TGGCCA 2 cut(s) 697, 1000
MmeI TCCRAC 1 cut(s) 937
MnlI CCTC 7 cut(s) 22, 52, 432, 503, 809, 901, 1035
Mox20I TGGCCA 2 cut(s) 697, 1000
MscI TGGCCA 2 cut(s) 697, 1000
MseI TTAA 4 cut(s) 173, 729, 839, 932
MslI CAYNNNNRTG 2 cut(s) 263, 406
Msp20I TGGCCA 2 cut(s) 697, 1000
MspA1I CMGCKG 1 cut(s) 452
MspI CCGG 1 cut(s) 532
MspR9I CCNGG 1 cut(s) 766
Mva1269I GAATGC 1 cut(s) 401
MvaI CCWGG 1 cut(s) 766
MwoI GCNNNNNNNGC 7 cut(s) 29, 44, 61, 537, 723, 817, 942
NdeI CATATG 1 cut(s) 655
NdeII GATC 3 cut(s) 232, 562, 791
NlaIII CATG 5 cut(s) 46, 562, 670, 1024, 1076
NlaIV GGNNCC 1 cut(s) 810
NspI RCATGY 2 cut(s) 1024, 1076
NspV TTCGAA 1 cut(s) 711
PctI GAATGC 1 cut(s) 401
PfeI GAWTC 1 cut(s) 237
PflMI CCANNNNNTGG 1 cut(s) 581
PkrI GCNGC 6 cut(s) 400, 443, 725, 888, 891, 947
Psp6I CCWGG 1 cut(s) 764
PspGI CCWGG 1 cut(s) 764
PspN4I GGNNCC 1 cut(s) 810
PspPI GGNCC 1 cut(s) 534
PsuI RGATCY 1 cut(s) 791
PvuII CAGCTG 1 cut(s) 452
RsaI GTAC 3 cut(s) 209, 649, 737
RsaNI GTAC 3 cut(s) 208, 648, 736
RseI CAYNNNNRTG 2 cut(s) 263, 406
SaqAI TTAA 4 cut(s) 173, 729, 839, 932
SatI GCNGC 6 cut(s) 399, 442, 724, 887, 890, 946
Sau3AI GATC 3 cut(s) 232, 562, 791
Sau96I GGNCC 1 cut(s) 534
ScrFI CCNGG 1 cut(s) 766
SduI GDGCHC 1 cut(s) 303
SfaNI GCATC 1 cut(s) 726
SfcI CTRYAG 2 cut(s) 369, 795
SfuI TTCGAA 1 cut(s) 711
SinI GGWCC 1 cut(s) 534
SmiMI CAYNNNNRTG 2 cut(s) 263, 406
SmlI CTYRAG 3 cut(s) 470, 922, 1012
SmoI CTYRAG 3 cut(s) 470, 922, 1012
Sse9I AATT 5 cut(s) 136, 336, 475, 586, 840
SsiI CCGC 2 cut(s) 296, 540
SspI AATATT 1 cut(s) 979
SspMI CTAG 2 cut(s) 813, 827
StyD4I CCNGG 1 cut(s) 764
TaiI ACGT 3 cut(s) 8, 199, 957
TaqI TCGA 3 cut(s) 16, 235, 711
TasI AATT 5 cut(s) 136, 336, 475, 586, 840
TatI WGTACW 2 cut(s) 207, 735
TfiI GAWTC 1 cut(s) 237
Tru1I TTAA 4 cut(s) 173, 729, 839, 932
Tru9I TTAA 4 cut(s) 173, 729, 839, 932
TscAI CASTG 5 cut(s) 104, 337, 533, 575, 748
TseI GCWGC 6 cut(s) 398, 441, 723, 886, 889, 945
TspDTI ATGAA 5 cut(s) 349, 418, 607, 843, 862
TspRI CASTG 5 cut(s) 104, 337, 533, 575, 748
Van91I CCANNNNNTGG 1 cut(s) 581
VneI GTGCAC 1 cut(s) 299
VpaK11BI GGWCC 1 cut(s) 534
XapI RAATTY 2 cut(s) 136, 336
XceI RCATGY 2 cut(s) 1024, 1076
XcmI CCANNNNNNNNNTGG 1 cut(s) 432
XspI CTAG 2 cut(s) 813, 827
ZraI GACGTC 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.