Rroxscaffold_5G00386910

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0011940
Physical Location & Seq
Reverse (-)
65642015 .. 65644479
2465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00386910.1

Sequence Viewer

Length: 1083 bp
ATGACATTAATCTCTCAACCTGCTCCAGAGGCAATACCAATTATGGCTGAATTGCCCCAGGAGCATATAACATCAATCAAGGAAGAATATGATGTTCAGTGTTGGGGTTGTGGACTACACCTTCTTCTTCCATCAAATTCTCCACTTTTCAAGTGTGGTTGGTGTGGAGCTTTAACAAATCAAAATGCAAGAAAACGTGATGTCAAGTACATTTGGCTGAGACGCTGGCGCGATCGAACCTTTGTCTTTATCCTCCTCGTATTTATGCTCTTTGTGATATGTGGTGGAGTGTGGGCCATGCACCCTGTTCTTTTCTCTACCAGCTATTTCACTGGAATTTTCCACTCCATCTTAACCTTCATATTGTCTGTAGCAACTGTTTACACATACAGTTCTGCTGCATTCAAGTGTGCTGGAACCCCTCCATTGATAGTCTGGGGCAGCTATCCAGCTGTTGGGAAAGGTGGCCTTGAGAATTATACGTTCTGTCACCTCTGCTCAAAGCCCAAGTCACCAAGAACTCATCACTGCCGAACCTGTCGACAGTGTATATTGGACATGGATCACCACTGCCCATTTATTGGGAATTGCGTTGGTGCTAATAACCACCCCCACTTCATTGCCTTACTTATTTCAGTTATCATCAGCACAACATATGTCTCTATCATGGCTGTATATGTAAGTTTCCAAATATGGCCACCCATAACATTTGGACCCATCAGCAACTCTAATGGGCATATCATTGAGTTGGCTTTGAGATATATCCAGGAGCTTATAATGTGTTTTGTAAGATCTGCAGTGTTTTTGGAGCCCAGAGGGCTTGTTCTAGTGTATCTGTTTATTTCTAGTGTTTCATTGGGGGTAGGGTTGTTCATACTTCTGTGGCAGCAGCTCTGTTATATATATAAGGGAAAAACATTCTTGAGTGATTTAAGTTCACAAGGCAATGATGAAGTTGGGGAGAAGGATTGCCAAAATATATTGCGTTTCTTTGGATGGCCATATTCTTTCTCAAGATACTGGCCTCTCTGGTCTATTTCAAGACTTTTGCCAAGTTTCCAGAAGAAGAGACACGCAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHHC

Protein Analysis

360

Amino Acids

41.0

Weight (kDa)

8.96

Isoelectric Point (pI)

42.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 160 - 308 1.5e-28 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011940)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18620
fragaria_vesca FvH4_4g36750
malus_domestica MD13G1007300.v1.1 MD13G1007400.v1.1 MD16G1000700.v1.1
prunus_persica Prupe.1G345600_v2.0.a1 Prupe.1G345600_v2.0.a1
pyrus_communis pycom13g00620 pycom16g00470
rosa_chinensis RchiOBHm_Chr4g0446471
rosa_laevigata RLG00000005658 RLG00000025803
rosa_roxburghii Rroxscaffold_5G00386910
rosa_rugosa Rorug04G0371700
rosa_samantha Rh4AG433300 Rh4BG442500 Rh4CG459800 Rh4DG441200
rosa_wichuraiana Rw4G037020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 776
Acc36I ACCTGC 1 cut(s) 28
AccB7I CCANNNNNTGG 2 cut(s) 455, 581
AccI GTMKAC 1 cut(s) 541
AccII CGCG 1 cut(s) 231
AclWI GGATC 1 cut(s) 570
AcoI YGGCCR 2 cut(s) 695, 998
AcsI RAATTY 2 cut(s) 136, 336
AfaI GTAC 1 cut(s) 209
AfiI CCNNNNNNNGG 2 cut(s) 455, 581
AgsI TTSAA 3 cut(s) 151, 406, 1041
AjnI CCWGG 2 cut(s) 57, 765
AluBI AGCT 6 cut(s) 170, 324, 444, 452, 772, 892
AluI AGCT 6 cut(s) 170, 324, 444, 452, 772, 892
Alw26I GTCTC 3 cut(s) 214, 664, 1063
AlwI GGATC 1 cut(s) 570
AoxI GGCC 5 cut(s) 294, 466, 695, 998, 1022
ApeKI GCWGC 4 cut(s) 398, 441, 886, 889
ApoI RAATTY 2 cut(s) 136, 336
ArsI GACNNNNNNTTYG 2 cut(s) 494, 526
AseI ATTAAT 1 cut(s) 8
AspLEI GCGC 1 cut(s) 231
AspS9I GGNCC 2 cut(s) 294, 713
AsuHPI GGTGA 3 cut(s) 482, 504, 557
AvaII GGWCC 1 cut(s) 713
BalI TGGCCA 2 cut(s) 697, 1000
BanII GRGCYC 1 cut(s) 813
BbvI GCAGC 4 cut(s) 385, 453, 898, 901
BccI CCATC 4 cut(s) 139, 356, 725, 990
BciT130I CCWGG 2 cut(s) 59, 767
BcoDI GTCTC 3 cut(s) 214, 664, 1063
BfaI CTAG 2 cut(s) 827, 846
BfmI CTRYAG 2 cut(s) 369, 795
BfuAI ACCTGC 1 cut(s) 28
BglI GCCNNNNNGGC 1 cut(s) 817
BglII AGATCT 1 cut(s) 791
BisI GCNGC 4 cut(s) 399, 442, 887, 890
BlsI GCNGC 4 cut(s) 400, 443, 888, 891
Bme1390I CCNGG 2 cut(s) 59, 767
Bme18I GGWCC 1 cut(s) 713
BmgT120I GGNCC 2 cut(s) 294, 713
BmiI GGNNCC 3 cut(s) 418, 715, 810
BmrFI CCNGG 2 cut(s) 59, 767
BpmI CTGGAG 1 cut(s) 9
BpuEI CTTGAG 3 cut(s) 491, 943, 997
BsaJI CCNNGG 1 cut(s) 57
Bsc4I CCNNNNNNNGG 2 cut(s) 455, 581
Bse1I ACTGG 2 cut(s) 337, 1025
Bse3DI GCAATG 2 cut(s) 618, 952
BseBI CCWGG 2 cut(s) 59, 767
BseDI CCNNGG 1 cut(s) 57
BseGI GGATG 1 cut(s) 1001
BseLI CCNNNNNNNGG 2 cut(s) 455, 581
BseMI GCAATG 2 cut(s) 618, 952
BseMII CTCAG 1 cut(s) 209
BseNI ACTGG 2 cut(s) 337, 1025
BseRI GAGGAG 1 cut(s) 245
BseXI GCAGC 4 cut(s) 385, 453, 898, 901
Bsh1236I CGCG 1 cut(s) 231
Bsh1285I CGRYCG 1 cut(s) 235
BshFI GGCC 5 cut(s) 296, 468, 697, 1000, 1024
BsiEI CGRYCG 1 cut(s) 235
BslI CCNNNNNNNGG 2 cut(s) 455, 581
BsmAI GTCTC 3 cut(s) 214, 664, 1063
BsmBI CGTCTC 1 cut(s) 214
BsmI GAATGC 1 cut(s) 401
BsnI GGCC 5 cut(s) 296, 468, 697, 1000, 1024
Bsp1286I GDGCHC 1 cut(s) 813
Bsp143I GATC 3 cut(s) 232, 562, 791
BspANI GGCC 5 cut(s) 296, 468, 697, 1000, 1024
BspCNI CTCAG 1 cut(s) 210
BspFNI CGCG 1 cut(s) 231
BspLI GGNNCC 3 cut(s) 418, 715, 810
BspMAI CTGCAG 1 cut(s) 799
BspMI ACCTGC 1 cut(s) 28
BspPI GGATC 1 cut(s) 570
BsrDI GCAATG 2 cut(s) 618, 952
BsrI ACTGG 2 cut(s) 337, 1025
BssECI CCNNGG 1 cut(s) 57
BssMI GATC 3 cut(s) 232, 562, 791
Bst2UI CCWGG 2 cut(s) 59, 767
Bst4CI ACNGT 3 cut(s) 379, 392, 546
Bst6I CTCTTC 1 cut(s) 1061
BstC8I GCNNGC 1 cut(s) 227
BstDEI CTNAG 1 cut(s) 218
BstF5I GGATG 1 cut(s) 1001
BstFNI CGCG 1 cut(s) 231
BstHHI GCGC 1 cut(s) 231
BstKTI GATC 3 cut(s) 235, 565, 794
BstMAI GTCTC 3 cut(s) 214, 664, 1063
BstMBI GATC 3 cut(s) 232, 562, 791
BstMCI CGRYCG 1 cut(s) 235
BstMWI GCNNNNNNNGC 3 cut(s) 29, 61, 817
BstNI CCWGG 2 cut(s) 59, 767
BstSCI CCNGG 2 cut(s) 57, 765
BstSFI CTRYAG 2 cut(s) 369, 795
BstUI CGCG 1 cut(s) 231
BstV1I GCAGC 4 cut(s) 385, 453, 898, 901
BstX2I RGATCY 1 cut(s) 791
BstYI RGATCY 1 cut(s) 791
BsuRI GGCC 5 cut(s) 296, 468, 697, 1000, 1024
BtsCI GGATG 1 cut(s) 1001
BtsI GCAGTG 3 cut(s) 526, 568, 804
BtsIMutI CAGTG 6 cut(s) 104, 330, 526, 551, 568, 804
BveI ACCTGC 1 cut(s) 28
Cac8I GCNNGC 1 cut(s) 227
CfoI GCGC 1 cut(s) 231
Cfr13I GGNCC 2 cut(s) 294, 713
CseI GACGC 1 cut(s) 231
Csp6I GTAC 1 cut(s) 208
CviAII CATG 3 cut(s) 298, 559, 667
CviQI GTAC 1 cut(s) 208
DdeI CTNAG 1 cut(s) 218
DpnI GATC 3 cut(s) 234, 564, 793
DpnII GATC 3 cut(s) 232, 562, 791
EaeI YGGCCR 2 cut(s) 695, 998
Eam1104I CTCTTC 1 cut(s) 1061
EarI CTCTTC 1 cut(s) 1061
Eco24I GRGCYC 1 cut(s) 813
Eco47I GGWCC 1 cut(s) 713
EcoRII CCWGG 2 cut(s) 57, 765
EcoT38I GRGCYC 1 cut(s) 813
Esp3I CGTCTC 1 cut(s) 214
FaeI CATG 3 cut(s) 301, 562, 670
FalI AAGNNNNNCTT 2 cut(s) 453, 485
FatI CATG 3 cut(s) 297, 558, 666
FauNDI CATATG 1 cut(s) 655
FblI GTMKAC 1 cut(s) 541
Fnu4HI GCNGC 4 cut(s) 399, 442, 887, 890
FokI GGATG 1 cut(s) 1008
FriOI GRGCYC 1 cut(s) 813
Fsp4HI GCNGC 4 cut(s) 399, 442, 887, 890
FspBI CTAG 2 cut(s) 827, 846
GlaI GCGC 1 cut(s) 230
GluI GCNGC 4 cut(s) 399, 442, 887, 890
GsuI CTGGAG 1 cut(s) 9
HaeIII GGCC 5 cut(s) 296, 468, 697, 1000, 1024
HgaI GACGC 1 cut(s) 231
HhaI GCGC 1 cut(s) 231
Hin1II CATG 3 cut(s) 301, 562, 670
Hin6I GCGC 1 cut(s) 229
HinP1I GCGC 1 cut(s) 229
HincII GTYRAC 1 cut(s) 542
HindII GTYRAC 1 cut(s) 542
HphI GGTGA 3 cut(s) 482, 504, 557
Hpy166II GTNNAC 4 cut(s) 113, 382, 542, 938
Hpy188III TCNNGA 5 cut(s) 26, 922, 1014, 1041, 1060
Hpy8I GTNNAC 4 cut(s) 113, 382, 542, 938
HpyAV CCTTC 3 cut(s) 131, 367, 958
HpyCH4III ACNGT 3 cut(s) 379, 392, 546
HpyCH4IV ACGT 2 cut(s) 196, 482
HpyCH4V TGCA 4 cut(s) 188, 301, 401, 797
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 61, 817
HpyF3I CTNAG 1 cut(s) 218
HpySE526I ACGT 2 cut(s) 196, 482
Hsp92II CATG 3 cut(s) 301, 562, 670
HspAI GCGC 1 cut(s) 229
Kzo9I GATC 3 cut(s) 232, 562, 791
LmnI GCTCC 5 cut(s) 28, 61, 167, 769, 808
Lsp1109I GCAGC 4 cut(s) 385, 453, 898, 901
MaeI CTAG 2 cut(s) 827, 846
MaeII ACGT 2 cut(s) 196, 482
MaeIII GTNAC 2 cut(s) 488, 510
MalI GATC 3 cut(s) 234, 564, 793
MboI GATC 3 cut(s) 232, 562, 791
MboII GAAGA 5 cut(s) 95, 116, 119, 1075, 1078
MflI RGATCY 1 cut(s) 791
MhlI GDGCHC 1 cut(s) 813
MlsI TGGCCA 2 cut(s) 697, 1000
MluCI AATT 6 cut(s) 39, 50, 136, 336, 475, 586
MluNI TGGCCA 2 cut(s) 697, 1000
MnlI CCTC 7 cut(s) 22, 263, 266, 432, 503, 809, 1035
Mox20I TGGCCA 2 cut(s) 697, 1000
MscI TGGCCA 2 cut(s) 697, 1000
MseI TTAA 4 cut(s) 8, 173, 353, 932
MslI CAYNNNNRTG 1 cut(s) 406
Msp20I TGGCCA 2 cut(s) 697, 1000
MspA1I CMGCKG 1 cut(s) 452
MspR9I CCNGG 2 cut(s) 59, 767
Mva1269I GAATGC 1 cut(s) 401
MvaI CCWGG 2 cut(s) 59, 767
MvnI CGCG 1 cut(s) 231
MwoI GCNNNNNNNGC 3 cut(s) 29, 61, 817
NdeI CATATG 1 cut(s) 655
NdeII GATC 3 cut(s) 232, 562, 791
NlaIII CATG 3 cut(s) 301, 562, 670
NlaIV GGNNCC 3 cut(s) 418, 715, 810
NmuCI GTSAC 2 cut(s) 488, 510
PctI GAATGC 1 cut(s) 401
PflMI CCANNNNNTGG 2 cut(s) 455, 581
PfoI TCCNGGA 1 cut(s) 765
PkrI GCNGC 4 cut(s) 400, 443, 888, 891
Ple19I CGATCG 1 cut(s) 235
PshBI ATTAAT 1 cut(s) 8
PsiI TTATAA 1 cut(s) 776
Psp6I CCWGG 2 cut(s) 57, 765
PspGI CCWGG 2 cut(s) 57, 765
PspN4I GGNNCC 3 cut(s) 418, 715, 810
PspPI GGNCC 2 cut(s) 294, 713
PstI CTGCAG 1 cut(s) 799
PsuI RGATCY 1 cut(s) 791
PvuI CGATCG 1 cut(s) 235
PvuII CAGCTG 1 cut(s) 452
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
RseI CAYNNNNRTG 1 cut(s) 406
SalI GTCGAC 1 cut(s) 540
SaqAI TTAA 4 cut(s) 8, 173, 353, 932
SatI GCNGC 4 cut(s) 399, 442, 887, 890
Sau3AI GATC 3 cut(s) 232, 562, 791
Sau96I GGNCC 2 cut(s) 294, 713
ScrFI CCNGG 2 cut(s) 59, 767
SduI GDGCHC 1 cut(s) 813
SfcI CTRYAG 2 cut(s) 369, 795
SinI GGWCC 1 cut(s) 713
SmiMI CAYNNNNRTG 1 cut(s) 406
SmlI CTYRAG 3 cut(s) 470, 922, 1012
SmoI CTYRAG 3 cut(s) 470, 922, 1012
Sse9I AATT 6 cut(s) 39, 50, 136, 336, 475, 586
SspMI CTAG 2 cut(s) 827, 846
StyD4I CCNGG 2 cut(s) 57, 765
TaaI ACNGT 3 cut(s) 379, 392, 546
TaiI ACGT 2 cut(s) 199, 485
TaqI TCGA 2 cut(s) 235, 541
TasI AATT 6 cut(s) 39, 50, 136, 336, 475, 586
TatI WGTACW 1 cut(s) 207
Tru1I TTAA 4 cut(s) 8, 173, 353, 932
Tru9I TTAA 4 cut(s) 8, 173, 353, 932
TscAI CASTG 6 cut(s) 104, 337, 533, 551, 575, 804
TseFI GTSAC 2 cut(s) 488, 510
TseI GCWGC 4 cut(s) 398, 441, 886, 889
Tsp45I GTSAC 2 cut(s) 488, 510
TspDTI ATGAA 5 cut(s) 349, 607, 843, 862, 966
TspRI CASTG 6 cut(s) 104, 337, 533, 551, 575, 804
Van91I CCANNNNNTGG 2 cut(s) 455, 581
VpaK11BI GGWCC 1 cut(s) 713
VspI ATTAAT 1 cut(s) 8
XapI RAATTY 2 cut(s) 136, 336
XcmI CCANNNNNNNNNTGG 1 cut(s) 432
XmiI GTMKAC 1 cut(s) 541
XspI CTAG 2 cut(s) 827, 846
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.