Rh4AG433300

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0011940
Physical Location & Seq
Reverse (-)
72747671 .. 72750089
2419 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG433300.1

Sequence Viewer

Length: 1041 bp
ATGGCTGAATTGCCCCAGGAGCATATAACATCAATCAAGGAAGAATATGATGTTCAGTGTTGGGGTTGTGGACTACACCTTCTTCTTCCTTCAAATTCTCCACTTTTCAAGTGTGGTTGGTGTGGAGCTTTAACTAATCAAAATGCAAGAAAACGTGATGTCAAGTACATTTGGCTGAGACGCTGGCGCGATCGAATTTTTGTCTTTATCCTCCTCATATTTATGCTCTTTGTGATATGTGGTGGAGTGTGGGCAGTGCACCCTGTTCTTTTCTCTACCGGCTATTTCACTGGAATTTTCCACTCCATCTTAACCTTCATATTGTCTGTAGCAACTGTTTACACATACAGTTCTGCTGCATTCAAGTGTGCTGGAACCCCTCCATTGATAGTCTGGGGCAGCTATCCAGCTGTTGGGAAAGGTGGCCTTGAGAATTATACCTTCTGTCACCTCTGCTCAAAGCCCAAGTCTCCAAGAACCCATCACTGCCGAACCTGTCGACAGTGTATATTGGACATGGATCACCACTGCCCATTTATTGGGAATTGTGTTGGTGCTAATAACCACCCCCACTTCATTGCCTTACTTATTTCAGTTATCATCAGCACAACATATGTCTCTATCATGGCTGTGTATGTAAGTTTCCAAATATGGCCACCCATAACATTTGGACCCATCAGCAACTCTAATGGACATATCACTGAGTTGGCTTTGAGATATATCCAGGAGCTTATAATGTGTTTTATAAGATCTGCAGTGTTTTTGGAGCCCAGAGGGCTTGTTCTAGTATATCTGTTTATTTCTAGTGTTTCATTGGGGGTAGGGTTGTTCATACTTCTGTGGCAGCAGCTCTGTTATATATATAAGGGAAAAACCTTCTTGAGTGATTTAAGTTCACAAGGCAATGAAGAAGTTGGGGAGAAGGATTGCCAAAATATATTGCGTTTCTTTGGATGGCCATATTCTTTCTCAAGATACTTGCCTTTCTGGTCTATTTCAAGACTTTTGCCAAGTTTCCAGAAGAAGAGACACACAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHHC

Protein Analysis

346

Amino Acids

39.51

Weight (kDa)

9.02

Isoelectric Point (pI)

39.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 146 - 294 1.2e-28 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011940)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18620
fragaria_vesca FvH4_4g36750
malus_domestica MD13G1007300.v1.1 MD13G1007400.v1.1 MD16G1000700.v1.1
prunus_persica Prupe.1G345600_v2.0.a1 Prupe.1G345600_v2.0.a1
pyrus_communis pycom13g00620 pycom16g00470
rosa_chinensis RchiOBHm_Chr4g0446471
rosa_laevigata RLG00000005658 RLG00000025803
rosa_roxburghii Rroxscaffold_5G00386910
rosa_rugosa Rorug04G0371700
rosa_samantha Rh4AG433300 Rh4BG442500 Rh4CG459800 Rh4DG441200
rosa_wichuraiana Rw4G037020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 734, 746
AccB7I CCANNNNNTGG 2 cut(s) 413, 539
AccI GTMKAC 1 cut(s) 499
AccII CGCG 1 cut(s) 189
AclWI GGATC 1 cut(s) 528
AcoI YGGCCR 2 cut(s) 653, 956
AcsI RAATTY 3 cut(s) 94, 195, 294
AfaI GTAC 1 cut(s) 167
AfiI CCNNNNNNNGG 2 cut(s) 413, 539
AgsI TTSAA 4 cut(s) 93, 109, 364, 999
AjnI CCWGG 2 cut(s) 15, 723
AluBI AGCT 5 cut(s) 128, 402, 410, 730, 850
AluI AGCT 5 cut(s) 128, 402, 410, 730, 850
Alw21I GWGCWC 1 cut(s) 261
Alw26I GTCTC 4 cut(s) 172, 474, 622, 1021
Alw44I GTGCAC 1 cut(s) 257
AlwI GGATC 1 cut(s) 528
AoxI GGCC 3 cut(s) 424, 653, 956
ApaLI GTGCAC 1 cut(s) 257
ApeKI GCWGC 4 cut(s) 356, 399, 844, 847
ApoI RAATTY 3 cut(s) 94, 195, 294
ArsI GACNNNNNNTTYG 2 cut(s) 452, 484
AspLEI GCGC 1 cut(s) 189
AspS9I GGNCC 1 cut(s) 671
AsuHPI GGTGA 2 cut(s) 440, 515
AvaII GGWCC 1 cut(s) 671
BaeGI GKGCMC 1 cut(s) 261
BalI TGGCCA 2 cut(s) 655, 958
BanII GRGCYC 1 cut(s) 771
Bbv12I GWGCWC 1 cut(s) 261
BbvI GCAGC 4 cut(s) 343, 411, 856, 859
BccI CCATC 4 cut(s) 314, 489, 683, 948
BciT130I CCWGG 2 cut(s) 17, 725
BcoDI GTCTC 4 cut(s) 172, 474, 622, 1021
BfaI CTAG 2 cut(s) 785, 804
BfmI CTRYAG 2 cut(s) 327, 753
BglI GCCNNNNNGGC 1 cut(s) 775
BglII AGATCT 1 cut(s) 749
BisI GCNGC 4 cut(s) 357, 400, 845, 848
BlsI GCNGC 4 cut(s) 358, 401, 846, 849
Bme1390I CCNGG 2 cut(s) 17, 725
Bme18I GGWCC 1 cut(s) 671
BmgT120I GGNCC 1 cut(s) 671
BmiI GGNNCC 3 cut(s) 376, 673, 768
BmrFI CCNGG 2 cut(s) 17, 725
BpuEI CTTGAG 3 cut(s) 449, 901, 955
BsaJI CCNNGG 1 cut(s) 15
Bsc4I CCNNNNNNNGG 2 cut(s) 413, 539
Bse118I RCCGGY 1 cut(s) 278
Bse1I ACTGG 1 cut(s) 295
Bse3DI GCAATG 2 cut(s) 576, 910
BseBI CCWGG 2 cut(s) 17, 725
BseDI CCNNGG 1 cut(s) 15
BseGI GGATG 1 cut(s) 959
BseLI CCNNNNNNNGG 2 cut(s) 413, 539
BseMI GCAATG 2 cut(s) 576, 910
BseMII CTCAG 2 cut(s) 167, 693
BseNI ACTGG 1 cut(s) 295
BseRI GAGGAG 1 cut(s) 203
BseSI GKGCMC 1 cut(s) 261
BseXI GCAGC 4 cut(s) 343, 411, 856, 859
Bsh1236I CGCG 1 cut(s) 189
Bsh1285I CGRYCG 1 cut(s) 193
BshFI GGCC 3 cut(s) 426, 655, 958
BsiEI CGRYCG 1 cut(s) 193
BsiHKAI GWGCWC 1 cut(s) 261
BsiSI CCGG 1 cut(s) 279
BslI CCNNNNNNNGG 2 cut(s) 413, 539
BsmAI GTCTC 4 cut(s) 172, 474, 622, 1021
BsmBI CGTCTC 1 cut(s) 172
BsmI GAATGC 1 cut(s) 359
BsnI GGCC 3 cut(s) 426, 655, 958
Bsp1286I GDGCHC 2 cut(s) 261, 771
Bsp143I GATC 3 cut(s) 190, 520, 749
BspANI GGCC 3 cut(s) 426, 655, 958
BspCNI CTCAG 2 cut(s) 168, 694
BspFNI CGCG 1 cut(s) 189
BspLI GGNNCC 3 cut(s) 376, 673, 768
BspMAI CTGCAG 1 cut(s) 757
BspPI GGATC 1 cut(s) 528
BsrDI GCAATG 2 cut(s) 576, 910
BsrFI RCCGGY 1 cut(s) 278
BsrI ACTGG 1 cut(s) 295
BssAI RCCGGY 1 cut(s) 278
BssECI CCNNGG 1 cut(s) 15
BssMI GATC 3 cut(s) 190, 520, 749
Bst2UI CCWGG 2 cut(s) 17, 725
Bst4CI ACNGT 3 cut(s) 337, 350, 504
Bst6I CTCTTC 1 cut(s) 1019
BstC8I GCNNGC 1 cut(s) 185
BstDEI CTNAG 2 cut(s) 176, 702
BstF5I GGATG 1 cut(s) 959
BstFNI CGCG 1 cut(s) 189
BstHHI GCGC 1 cut(s) 189
BstKTI GATC 3 cut(s) 193, 523, 752
BstMAI GTCTC 4 cut(s) 172, 474, 622, 1021
BstMBI GATC 3 cut(s) 190, 520, 749
BstMCI CGRYCG 1 cut(s) 193
BstMWI GCNNNNNNNGC 2 cut(s) 19, 775
BstNI CCWGG 2 cut(s) 17, 725
BstSCI CCNGG 2 cut(s) 15, 723
BstSFI CTRYAG 2 cut(s) 327, 753
BstSLI GKGCMC 1 cut(s) 261
BstUI CGCG 1 cut(s) 189
BstV1I GCAGC 4 cut(s) 343, 411, 856, 859
BstX2I RGATCY 1 cut(s) 749
BstYI RGATCY 1 cut(s) 749
BsuRI GGCC 3 cut(s) 426, 655, 958
BtsCI GGATG 1 cut(s) 959
BtsI GCAGTG 4 cut(s) 261, 484, 526, 762
BtsIMutI CAGTG 8 cut(s) 62, 261, 288, 484, 509, 526, 699, 762
Cac8I GCNNGC 1 cut(s) 185
CfoI GCGC 1 cut(s) 189
Cfr10I RCCGGY 1 cut(s) 278
Cfr13I GGNCC 1 cut(s) 671
CseI GACGC 1 cut(s) 189
Csp6I GTAC 1 cut(s) 166
CviAII CATG 2 cut(s) 517, 625
CviQI GTAC 1 cut(s) 166
DdeI CTNAG 2 cut(s) 176, 702
DpnI GATC 3 cut(s) 192, 522, 751
DpnII GATC 3 cut(s) 190, 520, 749
EaeI YGGCCR 2 cut(s) 653, 956
Eam1104I CTCTTC 1 cut(s) 1019
EarI CTCTTC 1 cut(s) 1019
Eco24I GRGCYC 1 cut(s) 771
Eco47I GGWCC 1 cut(s) 671
EcoRII CCWGG 2 cut(s) 15, 723
EcoT38I GRGCYC 1 cut(s) 771
Esp3I CGTCTC 1 cut(s) 172
FaeI CATG 2 cut(s) 520, 628
FalI AAGNNNNNCTT 2 cut(s) 411, 443
FatI CATG 2 cut(s) 516, 624
FauNDI CATATG 1 cut(s) 613
FblI GTMKAC 1 cut(s) 499
Fnu4HI GCNGC 4 cut(s) 357, 400, 845, 848
FokI GGATG 1 cut(s) 966
FriOI GRGCYC 1 cut(s) 771
Fsp4HI GCNGC 4 cut(s) 357, 400, 845, 848
FspBI CTAG 2 cut(s) 785, 804
GlaI GCGC 1 cut(s) 188
GluI GCNGC 4 cut(s) 357, 400, 845, 848
HaeIII GGCC 3 cut(s) 426, 655, 958
HapII CCGG 1 cut(s) 279
HgaI GACGC 1 cut(s) 189
HhaI GCGC 1 cut(s) 189
Hin1II CATG 2 cut(s) 520, 628
Hin6I GCGC 1 cut(s) 187
HinP1I GCGC 1 cut(s) 187
HincII GTYRAC 1 cut(s) 500
HindII GTYRAC 1 cut(s) 500
HpaII CCGG 1 cut(s) 279
HphI GGTGA 2 cut(s) 440, 515
Hpy166II GTNNAC 5 cut(s) 71, 259, 340, 500, 896
Hpy188III TCNNGA 4 cut(s) 880, 972, 999, 1018
Hpy8I GTNNAC 5 cut(s) 71, 259, 340, 500, 896
HpyAV CCTTC 6 cut(s) 89, 99, 325, 451, 886, 916
HpyCH4III ACNGT 3 cut(s) 337, 350, 504
HpyCH4IV ACGT 1 cut(s) 154
HpyCH4V TGCA 4 cut(s) 146, 259, 359, 755
HpyF10VI GCNNNNNNNGC 2 cut(s) 19, 775
HpyF3I CTNAG 2 cut(s) 176, 702
HpySE526I ACGT 1 cut(s) 154
Hsp92II CATG 2 cut(s) 520, 628
HspAI GCGC 1 cut(s) 187
Kzo9I GATC 3 cut(s) 190, 520, 749
LmnI GCTCC 4 cut(s) 19, 125, 727, 766
Lsp1109I GCAGC 4 cut(s) 343, 411, 856, 859
MaeI CTAG 2 cut(s) 785, 804
MaeII ACGT 1 cut(s) 154
MaeIII GTNAC 1 cut(s) 446
MalI GATC 3 cut(s) 192, 522, 751
MboI GATC 3 cut(s) 190, 520, 749
MboII GAAGA 6 cut(s) 53, 74, 77, 920, 1033, 1036
MflI RGATCY 1 cut(s) 749
MhlI GDGCHC 2 cut(s) 261, 771
MlsI TGGCCA 2 cut(s) 655, 958
MluCI AATT 6 cut(s) 8, 94, 195, 294, 433, 544
MluNI TGGCCA 2 cut(s) 655, 958
MnlI CCTC 5 cut(s) 221, 224, 390, 461, 767
Mox20I TGGCCA 2 cut(s) 655, 958
MscI TGGCCA 2 cut(s) 655, 958
MseI TTAA 3 cut(s) 131, 311, 890
MslI CAYNNNNRTG 3 cut(s) 221, 364, 629
Msp20I TGGCCA 2 cut(s) 655, 958
MspA1I CMGCKG 1 cut(s) 410
MspI CCGG 1 cut(s) 279
MspR9I CCNGG 2 cut(s) 17, 725
Mva1269I GAATGC 1 cut(s) 359
MvaI CCWGG 2 cut(s) 17, 725
MvnI CGCG 1 cut(s) 189
MwoI GCNNNNNNNGC 2 cut(s) 19, 775
NdeI CATATG 1 cut(s) 613
NdeII GATC 3 cut(s) 190, 520, 749
NlaIII CATG 2 cut(s) 520, 628
NlaIV GGNNCC 3 cut(s) 376, 673, 768
NmuCI GTSAC 1 cut(s) 446
PctI GAATGC 1 cut(s) 359
PflMI CCANNNNNTGG 2 cut(s) 413, 539
PfoI TCCNGGA 1 cut(s) 723
PkrI GCNGC 4 cut(s) 358, 401, 846, 849
Ple19I CGATCG 1 cut(s) 193
PsiI TTATAA 2 cut(s) 734, 746
Psp6I CCWGG 2 cut(s) 15, 723
PspGI CCWGG 2 cut(s) 15, 723
PspN4I GGNNCC 3 cut(s) 376, 673, 768
PspPI GGNCC 1 cut(s) 671
PstI CTGCAG 1 cut(s) 757
PsuI RGATCY 1 cut(s) 749
PvuI CGATCG 1 cut(s) 193
PvuII CAGCTG 1 cut(s) 410
RsaI GTAC 1 cut(s) 167
RsaNI GTAC 1 cut(s) 166
RseI CAYNNNNRTG 3 cut(s) 221, 364, 629
SalI GTCGAC 1 cut(s) 498
SaqAI TTAA 3 cut(s) 131, 311, 890
SatI GCNGC 4 cut(s) 357, 400, 845, 848
Sau3AI GATC 3 cut(s) 190, 520, 749
Sau96I GGNCC 1 cut(s) 671
ScrFI CCNGG 2 cut(s) 17, 725
SduI GDGCHC 2 cut(s) 261, 771
SfcI CTRYAG 2 cut(s) 327, 753
SinI GGWCC 1 cut(s) 671
SmiMI CAYNNNNRTG 3 cut(s) 221, 364, 629
SmlI CTYRAG 3 cut(s) 428, 880, 970
SmoI CTYRAG 3 cut(s) 428, 880, 970
Sse9I AATT 6 cut(s) 8, 94, 195, 294, 433, 544
SspMI CTAG 2 cut(s) 785, 804
StyD4I CCNGG 2 cut(s) 15, 723
TaaI ACNGT 3 cut(s) 337, 350, 504
TaiI ACGT 1 cut(s) 157
TaqI TCGA 2 cut(s) 193, 499
TasI AATT 6 cut(s) 8, 94, 195, 294, 433, 544
TatI WGTACW 1 cut(s) 165
Tru1I TTAA 3 cut(s) 131, 311, 890
Tru9I TTAA 3 cut(s) 131, 311, 890
TscAI CASTG 8 cut(s) 62, 261, 295, 491, 509, 533, 706, 762
TseFI GTSAC 1 cut(s) 446
TseI GCWGC 4 cut(s) 356, 399, 844, 847
Tsp45I GTSAC 1 cut(s) 446
TspDTI ATGAA 5 cut(s) 307, 565, 801, 820, 921
TspRI CASTG 8 cut(s) 62, 261, 295, 491, 509, 533, 706, 762
Van91I CCANNNNNTGG 2 cut(s) 413, 539
VneI GTGCAC 1 cut(s) 257
VpaK11BI GGWCC 1 cut(s) 671
XapI RAATTY 3 cut(s) 94, 195, 294
XcmI CCANNNNNNNNNTGG 1 cut(s) 390
XmiI GTMKAC 1 cut(s) 499
XspI CTAG 2 cut(s) 785, 804
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.