Prupe.1G345600_v2.0.a1

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0011940
Physical Location & Seq
Reverse (-)
32326408 .. 32329972
3565 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G345600.1

Sequence Viewer

Length: 1092 bp
ATGACATCACTAATCTCTGAATCCTTTGAAGTTGCTCCAAAGGCAACTCCAATTATGGCTGACTTGCCCAAGGAGCATTTTATAGCATCCGTCACGGAGGACTATGATGTCACGTGTTGGGGTTGTGGACTACACCTCCTTCTTCCATCACATGCTCCAGTTTTCAAATGTGGTTGGTGTGGAGCTTTAACAAACCAGAATGCAGGGAAACGAGAATGCAAGTACTTTTGGTTGAGACGCTTGCGGGATCGGTGCTTTGTCTGCATTCTCCTCATGTTTATGCTCTTTGTGATATGTGGTGGAGTGTGGGCAGCATTCCCTGTTATTTTCTCTATCAGCTATTTCCGTGGAATTTTTCACTCCATCATTACCTTCATCTTGTCTGTAACTACTGTTTATACATTCAGTTCTGCTTCGTTTGCGTGTGCTGGAACACCCCCATGCGTAGTGTGGGGTAGCTATCCAGCTGTGGGGAAAGGTGCCCTTGAGAATTATACCTTCTGTCAGCTCTGCTCAAAGCCAAAGTCACCTAGAAGTCATCATTGCCGATCCTGTGGAATGTGTATTTTGGACATGGATCATCACTGCCCATTTATTGGGAATTGTGTTGGTGCAGCTAACCACCGACACTTCATTGCCTTACTCATTTCAGTTGTCACCAGTACATTCTATATTTCTATCATGACCGTGTATGTATGTTGGCATATCTGGCCATCCATAACATATGAACCCTTCGACCACTCATATGGGTTTGGCAGTGATTTTGCTATGAGAGCTATCCGTGAGATTGTATATGGTTTGCTAAAATCTGTAGTGCTTTTATCCCCTAGAGGGCTTGTTTTGGTGTATCTGTTTGTTTCAAGTGTTTCATTGGGGATAGGGTTGAGCATACTTCTGTGGCAGCAACTCTGTTTTATATACGAGGGAAAGACCTACTTGAATCATTTAAACGATGGAGTTGGAGAGAAGGATTGCCAAAATCTTGTGCAGTTCTTTGGATGCCCATATTCTTTCTCAATATATTTGCCCCACTGCTCTCTCTCAAGATTTTTGCCAAGTTTCCGAAAGAAGACACAGAGACACAAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHHC

Protein Analysis

364

Amino Acids

40.92

Weight (kDa)

8.71

Isoelectric Point (pI)

35.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011940)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18620
fragaria_vesca FvH4_4g36750
malus_domestica MD13G1007300.v1.1 MD13G1007400.v1.1 MD16G1000700.v1.1
prunus_persica Prupe.1G345600_v2.0.a1 Prupe.1G345600_v2.0.a1
pyrus_communis pycom13g00620 pycom16g00470
rosa_chinensis RchiOBHm_Chr4g0446471
rosa_laevigata RLG00000005658 RLG00000025803
rosa_roxburghii Rroxscaffold_5G00386910
rosa_rugosa Rorug04G0371700
rosa_samantha Rh4AG433300 Rh4BG442500 Rh4CG459800 Rh4DG441200
rosa_wichuraiana Rw4G037020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 107
AccB1I GGYRCC 1 cut(s) 479
AccB7I CCANNNNNTGG 1 cut(s) 596
AciI CCGC 1 cut(s) 244
AclWI GGATC 3 cut(s) 255, 543, 585
AcoI YGGCCR 1 cut(s) 710
AcsI RAATTY 1 cut(s) 351
AcvI CACGTG 1 cut(s) 114
AfaI GTAC 2 cut(s) 224, 664
AfiI CCNNNNNNNGG 3 cut(s) 470, 596, 831
AflIII ACRYGT 1 cut(s) 113
AgsI TTSAA 4 cut(s) 29, 166, 861, 940
AluBI AGCT 7 cut(s) 185, 339, 459, 467, 508, 617, 776
AluI AGCT 7 cut(s) 185, 339, 459, 467, 508, 617, 776
Alw26I GTCTC 2 cut(s) 229, 1072
AlwI GGATC 3 cut(s) 255, 543, 585
AoxI GGCC 1 cut(s) 710
ApeKI GCWGC 3 cut(s) 311, 614, 901
ApoI RAATTY 1 cut(s) 351
ArsI GACNNNNNNTTYG 2 cut(s) 509, 541
AsuHPI GGTGA 2 cut(s) 519, 649
BaeGI GKGCMC 1 cut(s) 484
BalI TGGCCA 1 cut(s) 712
BanI GGYRCC 1 cut(s) 479
BbrPI CACGTG 1 cut(s) 114
BbsI GAAGAC 1 cut(s) 1076
BbvI GCAGC 3 cut(s) 323, 626, 913
BccI CCATC 4 cut(s) 154, 371, 721, 947
BcoDI GTCTC 2 cut(s) 229, 1072
BfaI CTAG 2 cut(s) 531, 828
BfmI CTRYAG 1 cut(s) 810
BisI GCNGC 3 cut(s) 312, 615, 902
BlsI GCNGC 3 cut(s) 313, 616, 903
BmcAI AGTACT 1 cut(s) 224
BmiI GGNNCC 1 cut(s) 481
BmsI GCATC 2 cut(s) 95, 989
BpiI GAAGAC 1 cut(s) 1076
BpmI CTGGAG 1 cut(s) 141
BpuEI CTTGAG 2 cut(s) 506, 1027
BsaAI YACGTR 1 cut(s) 114
BsaJI CCNNGG 2 cut(s) 69, 346
BsaXI ACNNNNNCTCC 2 cut(s) 120, 150
Bsc4I CCNNNNNNNGG 3 cut(s) 470, 596, 831
Bse1I ACTGG 2 cut(s) 158, 660
Bse3DI GCAATG 2 cut(s) 541, 633
BseDI CCNNGG 2 cut(s) 69, 346
BseGI GGATG 3 cut(s) 86, 713, 1004
BseLI CCNNNNNNNGG 3 cut(s) 470, 596, 831
BseMI GCAATG 2 cut(s) 541, 633
BseNI ACTGG 2 cut(s) 158, 660
BseRI GAGGAG 1 cut(s) 260
BseSI GKGCMC 1 cut(s) 484
BseXI GCAGC 3 cut(s) 323, 626, 913
BsgI GTGCAG 2 cut(s) 633, 1007
BshFI GGCC 1 cut(s) 712
BshNI GGYRCC 1 cut(s) 479
BslI CCNNNNNNNGG 3 cut(s) 470, 596, 831
BsmAI GTCTC 2 cut(s) 229, 1072
BsmBI CGTCTC 1 cut(s) 229
BsmI GAATGC 4 cut(s) 205, 221, 264, 314
BsnI GGCC 1 cut(s) 712
Bsp1286I GDGCHC 1 cut(s) 484
Bsp143I GATC 3 cut(s) 247, 548, 577
BspACI CCGC 1 cut(s) 244
BspANI GGCC 1 cut(s) 712
BspHI TCATGA 1 cut(s) 681
BspLI GGNNCC 1 cut(s) 481
BspPI GGATC 3 cut(s) 255, 543, 585
BspT107I GGYRCC 1 cut(s) 479
BsrDI GCAATG 2 cut(s) 541, 633
BsrI ACTGG 2 cut(s) 158, 660
BssECI CCNNGG 2 cut(s) 69, 346
BssMI GATC 3 cut(s) 247, 548, 577
BssT1I CCWWGG 1 cut(s) 69
Bst4CI ACNGT 2 cut(s) 394, 688
BstBAI YACGTR 1 cut(s) 114
BstC8I GCNNGC 1 cut(s) 242
BstDSI CCRYGG 1 cut(s) 346
BstF5I GGATG 3 cut(s) 86, 713, 1004
BstKTI GATC 3 cut(s) 250, 551, 580
BstMAI GTCTC 2 cut(s) 229, 1072
BstMBI GATC 3 cut(s) 247, 548, 577
BstMWI GCNNNNNNNGC 6 cut(s) 41, 73, 261, 419, 709, 773
BstNSI RCATGY 1 cut(s) 155
BstSFI CTRYAG 1 cut(s) 810
BstSLI GKGCMC 1 cut(s) 484
BstV1I GCAGC 3 cut(s) 323, 626, 913
BstV2I GAAGAC 1 cut(s) 1076
BstXI CCANNNNNNTGG 1 cut(s) 746
BsuRI GGCC 1 cut(s) 712
BtgI CCRYGG 1 cut(s) 346
BtsCI GGATG 3 cut(s) 86, 713, 1004
BtsI GCAGTG 3 cut(s) 583, 763, 1030
BtsIMutI CAGTG 3 cut(s) 583, 763, 1030
Cac8I GCNNGC 1 cut(s) 242
CciI TCATGA 1 cut(s) 681
CseI GACGC 1 cut(s) 246
Csp6I GTAC 2 cut(s) 223, 663
CviAII CATG 5 cut(s) 152, 274, 441, 574, 682
CviQI GTAC 2 cut(s) 223, 663
DpnI GATC 3 cut(s) 249, 550, 579
DpnII GATC 3 cut(s) 247, 548, 577
DraI TTTAAA 1 cut(s) 948
DrdI GACNNNNNNGTC 1 cut(s) 107
DseDI GACNNNNNNGTC 1 cut(s) 107
EaeI YGGCCR 1 cut(s) 710
Eco130I CCWWGG 1 cut(s) 69
Eco72I CACGTG 1 cut(s) 114
EcoT14I CCWWGG 1 cut(s) 69
ErhI CCWWGG 1 cut(s) 69
Esp3I CGTCTC 1 cut(s) 229
FaeI CATG 5 cut(s) 155, 277, 444, 577, 685
FalI AAGNNNNNCTT 4 cut(s) 468, 500, 920, 952
FatI CATG 5 cut(s) 151, 273, 440, 573, 681
FauI CCCGC 1 cut(s) 237
FauNDI CATATG 2 cut(s) 724, 745
Fnu4HI GCNGC 3 cut(s) 312, 615, 902
FokI GGATG 3 cut(s) 73, 700, 1011
Fsp4HI GCNGC 3 cut(s) 312, 615, 902
FspBI CTAG 2 cut(s) 531, 828
GluI GCNGC 3 cut(s) 312, 615, 902
GsuI CTGGAG 1 cut(s) 141
HaeIII GGCC 1 cut(s) 712
HgaI GACGC 1 cut(s) 246
Hin1II CATG 5 cut(s) 155, 277, 444, 577, 685
HinfI GANTC 2 cut(s) 20, 940
HphI GGTGA 2 cut(s) 519, 649
Hpy166II GTNNAC 1 cut(s) 128
Hpy188I TCNGA 2 cut(s) 19, 1064
Hpy188III TCNNGA 2 cut(s) 682, 1044
Hpy8I GTNNAC 1 cut(s) 128
HpyAV CCTTC 5 cut(s) 149, 382, 508, 742, 961
HpyCH4III ACNGT 2 cut(s) 394, 688
HpyCH4IV ACGT 1 cut(s) 113
HpyCH4V TGCA 5 cut(s) 203, 219, 264, 614, 988
HpyF10VI GCNNNNNNNGC 6 cut(s) 41, 73, 261, 419, 709, 773
HpySE526I ACGT 1 cut(s) 113
Hsp92II CATG 5 cut(s) 155, 277, 444, 577, 685
Kzo9I GATC 3 cut(s) 247, 548, 577
LmnI GCTCC 4 cut(s) 40, 73, 160, 182
LpnPI CCDG 9 cut(s) 171, 189, 209, 333, 414, 477, 565, 673, 694
Lsp1109I GCAGC 3 cut(s) 323, 626, 913
LweI GCATC 2 cut(s) 95, 989
MaeI CTAG 2 cut(s) 531, 828
MaeII ACGT 1 cut(s) 113
MaeIII GTNAC 5 cut(s) 91, 109, 385, 525, 655
MalI GATC 3 cut(s) 249, 550, 579
MboI GATC 3 cut(s) 247, 548, 577
MboII GAAGA 2 cut(s) 134, 1081
MhlI GDGCHC 1 cut(s) 484
MlsI TGGCCA 1 cut(s) 712
MluCI AATT 4 cut(s) 51, 351, 490, 601
MluNI TGGCCA 1 cut(s) 712
MmeI TCCRAC 1 cut(s) 940
MnlI CCTC 5 cut(s) 91, 146, 281, 824, 916
Mox20I TGGCCA 1 cut(s) 712
MscI TGGCCA 1 cut(s) 712
MseI TTAA 2 cut(s) 188, 947
MslI CAYNNNNRTG 4 cut(s) 278, 439, 686, 744
Msp20I TGGCCA 1 cut(s) 712
MspA1I CMGCKG 1 cut(s) 467
Mva1269I GAATGC 4 cut(s) 205, 221, 264, 314
MwoI GCNNNNNNNGC 6 cut(s) 41, 73, 261, 419, 709, 773
NdeI CATATG 2 cut(s) 724, 745
NdeII GATC 3 cut(s) 247, 548, 577
NlaIII CATG 5 cut(s) 155, 277, 444, 577, 685
NlaIV GGNNCC 1 cut(s) 481
NmuCI GTSAC 4 cut(s) 91, 109, 525, 655
NspI RCATGY 1 cut(s) 155
PagI TCATGA 1 cut(s) 681
PctI GAATGC 4 cut(s) 205, 221, 264, 314
PfeI GAWTC 2 cut(s) 20, 940
PflMI CCANNNNNTGG 1 cut(s) 596
PkrI GCNGC 3 cut(s) 313, 616, 903
PmaCI CACGTG 1 cut(s) 114
PmlI CACGTG 1 cut(s) 114
Ppu21I YACGTR 1 cut(s) 114
PspCI CACGTG 1 cut(s) 114
PspN4I GGNNCC 1 cut(s) 481
PvuII CAGCTG 1 cut(s) 467
RsaI GTAC 2 cut(s) 224, 664
RsaNI GTAC 2 cut(s) 223, 663
RseI CAYNNNNRTG 4 cut(s) 278, 439, 686, 744
SaqAI TTAA 2 cut(s) 188, 947
SatI GCNGC 3 cut(s) 312, 615, 902
Sau3AI GATC 3 cut(s) 247, 548, 577
ScaI AGTACT 1 cut(s) 224
SduI GDGCHC 1 cut(s) 484
SfaNI GCATC 2 cut(s) 95, 989
SfcI CTRYAG 1 cut(s) 810
SmiMI CAYNNNNRTG 4 cut(s) 278, 439, 686, 744
SmlI CTYRAG 2 cut(s) 485, 1042
SmoI CTYRAG 2 cut(s) 485, 1042
Sse9I AATT 4 cut(s) 51, 351, 490, 601
SsiI CCGC 1 cut(s) 244
SspMI CTAG 2 cut(s) 531, 828
StyI CCWWGG 1 cut(s) 69
TaaI ACNGT 2 cut(s) 394, 688
TaiI ACGT 1 cut(s) 116
TaqI TCGA 1 cut(s) 735
TasI AATT 4 cut(s) 51, 351, 490, 601
TatI WGTACW 2 cut(s) 222, 662
TfiI GAWTC 2 cut(s) 20, 940
Tru1I TTAA 2 cut(s) 188, 947
Tru9I TTAA 2 cut(s) 188, 947
TscAI CASTG 3 cut(s) 590, 763, 1037
TseFI GTSAC 4 cut(s) 91, 109, 525, 655
TseI GCWGC 3 cut(s) 311, 614, 901
Tsp45I GTSAC 4 cut(s) 91, 109, 525, 655
TspDTI ATGAA 4 cut(s) 364, 622, 741, 858
TspGWI ACGGA 4 cut(s) 79, 110, 335, 770
TspRI CASTG 3 cut(s) 590, 763, 1037
Van91I CCANNNNNTGG 1 cut(s) 596
XapI RAATTY 1 cut(s) 351
XceI RCATGY 1 cut(s) 155
XcmI CCANNNNNNNNNTGG 1 cut(s) 447
XspI CTAG 2 cut(s) 531, 828
ZrmI AGTACT 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.