Rh4CG459800

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0011940
Physical Location & Seq
Reverse (-)
69085628 .. 69088455
2828 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG459800.1

Sequence Viewer

Length: 1416 bp
ATGTTTGTTAAGGATGAGTATCTGGAAATGTTACCATGCCTTGTATTTCTTGATCAATCAGCAACATTTCAGAAAATCAAAAAGCTCATTTGCTGCCCTCCTTGTCTTTACAGAACACACGAGCCACGAGGAATAGAAATTGAGAAAATTTACAAGTTGGGCCTCATTGGGCCTTTACCCAAGTTGGGGTTGGACCCGGTCAAAGTCACCTCACAAAGTACCACTGTCCAATTTCCATTTGACACTTACCAGAATTTCAATCCCTCCCTCCTTGGAGACACTGACGATGGAGAACCTTCTTCTTCTTCAGAATTGGGATTCGTTCCAACTTGGATGACATTAATCTCTCAACCTGCTCCAGAGGCAATACCAATTATGGCTGAATTGCCCCAGGAGCATATAACATCAATCAAGGAAGAATATGATGTTCAGTGTTGGGGTTGTGGACTACACCTTCTTCTTCCATCAAATTCTCCACTTTTCAAGTGTGGTTGGTGTGGAGCTTTAACAAATCAAAATGCAAGAAAACGTGATGTCAAGTACATTTGGCTGAGACGCTGGCGCGATCGAATCTTTGTCTTTATCCTCCTCGTATTTATGCTCTTTGTGATATGTGGTGGAGTGTGGGCCATGCACCCTGTTCTTTTCTCTACCAGCTATTTCACTGGAATTTTCCACTCCATCTTAACCTTCATATTGTCTGTAGCAACTGTTTACACATACAGTTCTGCTGCATTCAAGTGTGCTGGAACCCCTCCATTGATAGTCTGGGGCAGCTATCCAGCTGTTGGGAAAGGTGGCCTTGAGAATTATACCTTCTGTCACCTCTGCTCAAAGCCCAAGTCACCAAGAACTCATCACTGCCGAACCTGTCAACAGTGTATATTGGACATGGATCACCACTGCCCATTTATTGGGAATTGCGTTGGTGCTAATAACCACCCCCACTTCATTGCCTTACTTATTTCAGTTATCATCAGCACAACATATGTCTCTATCATGGCTGTATATGTAAGTTTCCAAATATGGCCACCCATAACATTTGGACCCATCAGCAACTCTAATGGGCATATCACTGAGTTGGCTTTGAGATATATCCAGGAGCTTATAATGTGTTTTATAAGATCTGCAGTGTTTTTGGAGCCCAGAGGGCTTGTTCTAGTATATCTGTTTATTTCTAGTGTTTCATTGGGGGTAGGGTTGTTCATACTTCTGTGGCAGCAGCTCTGTTATATATATAAGGGAAAAACCTTCTTGAGTGATTTAAGTTCACAAGGCAATGATGAAGTTGGGGAGAAGGATTGCCAAAATATATTGCGTTTCTTTGGATGGCCATATTCTTTCTCAAGATACTTGCCTCTCTGGTCTATTTCAAGACTTTTGCCAAGTTTCCAGAAGAAGAGACACGCAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHHC

Protein Analysis

471

Amino Acids

53.42

Weight (kDa)

8.41

Isoelectric Point (pI)

43.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 271 - 419 2.6e-28 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011940)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18620
fragaria_vesca FvH4_4g36750
malus_domestica MD13G1007300.v1.1 MD13G1007400.v1.1 MD16G1000700.v1.1
prunus_persica Prupe.1G345600_v2.0.a1 Prupe.1G345600_v2.0.a1
pyrus_communis pycom13g00620 pycom16g00470
rosa_chinensis RchiOBHm_Chr4g0446471
rosa_laevigata RLG00000005658 RLG00000025803
rosa_roxburghii Rroxscaffold_5G00386910
rosa_rugosa Rorug04G0371700
rosa_samantha Rh4AG433300 Rh4BG442500 Rh4CG459800 Rh4DG441200
rosa_wichuraiana Rw4G037020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1109, 1121
Acc36I ACCTGC 1 cut(s) 361
AccB7I CCANNNNNTGG 2 cut(s) 788, 914
AccII CGCG 1 cut(s) 564
AclWI GGATC 1 cut(s) 903
AcoI YGGCCR 2 cut(s) 1028, 1331
AcsI RAATTY 4 cut(s) 147, 253, 469, 669
AcuI CTGAAG 1 cut(s) 291
AfaI GTAC 2 cut(s) 220, 542
AfiI CCNNNNNNNGG 4 cut(s) 185, 186, 788, 914
AgsI TTSAA 4 cut(s) 259, 484, 739, 1374
AjnI CCWGG 2 cut(s) 390, 1098
AluBI AGCT 7 cut(s) 85, 503, 657, 777, 785, 1105, 1225
AluI AGCT 7 cut(s) 85, 503, 657, 777, 785, 1105, 1225
Alw26I GTCTC 4 cut(s) 270, 547, 997, 1396
AlwI GGATC 1 cut(s) 903
AoxI GGCC 6 cut(s) 160, 170, 627, 799, 1028, 1331
ApeKI GCWGC 5 cut(s) 93, 731, 774, 1219, 1222
ApoI RAATTY 4 cut(s) 147, 253, 469, 669
ArsI GACNNNNNNTTYG 2 cut(s) 827, 859
AseI ATTAAT 1 cut(s) 341
AspLEI GCGC 1 cut(s) 564
AspS9I GGNCC 5 cut(s) 160, 170, 193, 627, 1046
AsuC2I CCSGG 1 cut(s) 197
AsuHPI GGTGA 4 cut(s) 199, 815, 837, 890
AvaII GGWCC 2 cut(s) 193, 1046
BalI TGGCCA 2 cut(s) 1030, 1333
BanII GRGCYC 1 cut(s) 1146
BauI CACGAG 2 cut(s) 119, 126
BbvI GCAGC 5 cut(s) 80, 718, 786, 1231, 1234
BccI CCATC 5 cut(s) 281, 472, 689, 1058, 1323
BciT130I CCWGG 2 cut(s) 392, 1100
BclI TGATCA 1 cut(s) 52
BcnI CCSGG 1 cut(s) 197
BcoDI GTCTC 4 cut(s) 270, 547, 997, 1396
BfaI CTAG 2 cut(s) 1160, 1179
BfmI CTRYAG 2 cut(s) 702, 1128
BfuAI ACCTGC 1 cut(s) 361
BglI GCCNNNNNGGC 1 cut(s) 1150
BglII AGATCT 1 cut(s) 1124
BisI GCNGC 5 cut(s) 94, 732, 775, 1220, 1223
BlsI GCNGC 5 cut(s) 95, 733, 776, 1221, 1224
Bme1390I CCNGG 3 cut(s) 197, 392, 1100
Bme18I GGWCC 2 cut(s) 193, 1046
BmgT120I GGNCC 5 cut(s) 160, 170, 193, 627, 1046
BmiI GGNNCC 4 cut(s) 195, 751, 1048, 1143
BmrFI CCNGG 3 cut(s) 197, 392, 1100
BpmI CTGGAG 1 cut(s) 342
BpuEI CTTGAG 3 cut(s) 824, 1276, 1330
BpuMI CCSGG 1 cut(s) 197
BsaBI GATNNNNATC 1 cut(s) 18
BsaJI CCNNGG 2 cut(s) 271, 390
Bsc4I CCNNNNNNNGG 4 cut(s) 185, 186, 788, 914
Bse1I ACTGG 1 cut(s) 670
Bse3DI GCAATG 2 cut(s) 951, 1285
Bse8I GATNNNNATC 1 cut(s) 18
BseBI CCWGG 2 cut(s) 392, 1100
BseDI CCNNGG 2 cut(s) 271, 390
BseGI GGATG 3 cut(s) 19, 339, 1334
BseJI GATNNNNATC 1 cut(s) 18
BseLI CCNNNNNNNGG 4 cut(s) 185, 186, 788, 914
BseMI GCAATG 2 cut(s) 951, 1285
BseMII CTCAG 2 cut(s) 542, 1068
BseNI ACTGG 1 cut(s) 670
BseRI GAGGAG 1 cut(s) 578
BseXI GCAGC 5 cut(s) 80, 718, 786, 1231, 1234
Bsh1236I CGCG 1 cut(s) 564
Bsh1285I CGRYCG 1 cut(s) 568
BshFI GGCC 6 cut(s) 162, 172, 629, 801, 1030, 1333
BsiEI CGRYCG 1 cut(s) 568
BsiSI CCGG 1 cut(s) 197
BslI CCNNNNNNNGG 4 cut(s) 185, 186, 788, 914
BsmAI GTCTC 4 cut(s) 270, 547, 997, 1396
BsmBI CGTCTC 1 cut(s) 547
BsmI GAATGC 1 cut(s) 734
BsnI GGCC 6 cut(s) 162, 172, 629, 801, 1030, 1333
Bsp1286I GDGCHC 1 cut(s) 1146
Bsp143I GATC 4 cut(s) 52, 565, 895, 1124
BspANI GGCC 6 cut(s) 162, 172, 629, 801, 1030, 1333
BspCNI CTCAG 2 cut(s) 543, 1069
BspFNI CGCG 1 cut(s) 564
BspLI GGNNCC 4 cut(s) 195, 751, 1048, 1143
BspMAI CTGCAG 1 cut(s) 1132
BspMI ACCTGC 1 cut(s) 361
BspPI GGATC 1 cut(s) 903
BsrDI GCAATG 2 cut(s) 951, 1285
BsrI ACTGG 1 cut(s) 670
BssECI CCNNGG 2 cut(s) 271, 390
BssMI GATC 4 cut(s) 52, 565, 895, 1124
BssSI CACGAG 2 cut(s) 119, 126
BssT1I CCWWGG 1 cut(s) 271
Bst2BI CACGAG 2 cut(s) 119, 126
Bst2UI CCWGG 2 cut(s) 392, 1100
Bst4CI ACNGT 4 cut(s) 226, 712, 725, 879
Bst6I CTCTTC 1 cut(s) 1394
BstC8I GCNNGC 1 cut(s) 560
BstDEI CTNAG 2 cut(s) 551, 1077
BstF5I GGATG 3 cut(s) 19, 339, 1334
BstFNI CGCG 1 cut(s) 564
BstHHI GCGC 1 cut(s) 564
BstKTI GATC 4 cut(s) 55, 568, 898, 1127
BstMAI GTCTC 4 cut(s) 270, 547, 997, 1396
BstMBI GATC 4 cut(s) 52, 565, 895, 1124
BstMCI CGRYCG 1 cut(s) 568
BstMWI GCNNNNNNNGC 3 cut(s) 362, 394, 1150
BstNI CCWGG 2 cut(s) 392, 1100
BstSCI CCNGG 3 cut(s) 195, 390, 1098
BstSFI CTRYAG 2 cut(s) 702, 1128
BstUI CGCG 1 cut(s) 564
BstV1I GCAGC 5 cut(s) 80, 718, 786, 1231, 1234
BstX2I RGATCY 1 cut(s) 1124
BstYI RGATCY 1 cut(s) 1124
BsuRI GGCC 6 cut(s) 162, 172, 629, 801, 1030, 1333
BtsCI GGATG 3 cut(s) 19, 339, 1334
BtsI GCAGTG 3 cut(s) 859, 901, 1137
BtsIMutI CAGTG 9 cut(s) 222, 279, 437, 663, 859, 884, 901, 1074, 1137
BveI ACCTGC 1 cut(s) 361
Cac8I GCNNGC 1 cut(s) 560
CfoI GCGC 1 cut(s) 564
Cfr13I GGNCC 5 cut(s) 160, 170, 193, 627, 1046
CseI GACGC 1 cut(s) 564
Csp6I GTAC 2 cut(s) 219, 541
CviAII CATG 4 cut(s) 36, 631, 892, 1000
CviQI GTAC 2 cut(s) 219, 541
DdeI CTNAG 2 cut(s) 551, 1077
DpnI GATC 4 cut(s) 54, 567, 897, 1126
DpnII GATC 4 cut(s) 52, 565, 895, 1124
EaeI YGGCCR 2 cut(s) 1028, 1331
Eam1104I CTCTTC 1 cut(s) 1394
EarI CTCTTC 1 cut(s) 1394
Eco130I CCWWGG 1 cut(s) 271
Eco24I GRGCYC 1 cut(s) 1146
Eco47I GGWCC 2 cut(s) 193, 1046
Eco57I CTGAAG 1 cut(s) 291
EcoRII CCWGG 2 cut(s) 390, 1098
EcoT14I CCWWGG 1 cut(s) 271
EcoT38I GRGCYC 1 cut(s) 1146
ErhI CCWWGG 1 cut(s) 271
Esp3I CGTCTC 1 cut(s) 547
FaeI CATG 4 cut(s) 39, 634, 895, 1003
FalI AAGNNNNNCTT 2 cut(s) 786, 818
FatI CATG 4 cut(s) 35, 630, 891, 999
FauNDI CATATG 1 cut(s) 988
FbaI TGATCA 1 cut(s) 52
Fnu4HI GCNGC 5 cut(s) 94, 732, 775, 1220, 1223
FokI GGATG 3 cut(s) 26, 346, 1341
FriOI GRGCYC 1 cut(s) 1146
Fsp4HI GCNGC 5 cut(s) 94, 732, 775, 1220, 1223
FspBI CTAG 2 cut(s) 1160, 1179
GlaI GCGC 1 cut(s) 563
GluI GCNGC 5 cut(s) 94, 732, 775, 1220, 1223
GsuI CTGGAG 1 cut(s) 342
HaeIII GGCC 6 cut(s) 162, 172, 629, 801, 1030, 1333
HapII CCGG 1 cut(s) 197
HgaI GACGC 1 cut(s) 564
HhaI GCGC 1 cut(s) 564
Hin1II CATG 4 cut(s) 39, 634, 895, 1003
Hin6I GCGC 1 cut(s) 562
HinP1I GCGC 1 cut(s) 562
HincII GTYRAC 1 cut(s) 875
HindII GTYRAC 1 cut(s) 875
HinfI GANTC 2 cut(s) 318, 570
HpaII CCGG 1 cut(s) 197
HphI GGTGA 4 cut(s) 199, 815, 837, 890
Hpy166II GTNNAC 4 cut(s) 446, 715, 875, 1271
Hpy188I TCNGA 2 cut(s) 72, 310
Hpy188III TCNNGA 7 cut(s) 23, 50, 359, 1255, 1347, 1374, 1393
Hpy8I GTNNAC 4 cut(s) 446, 715, 875, 1271
HpyAV CCTTC 6 cut(s) 306, 464, 700, 826, 1261, 1291
HpyCH4III ACNGT 4 cut(s) 226, 712, 725, 879
HpyCH4IV ACGT 1 cut(s) 529
HpyCH4V TGCA 4 cut(s) 521, 634, 734, 1130
HpyF10VI GCNNNNNNNGC 3 cut(s) 362, 394, 1150
HpyF3I CTNAG 2 cut(s) 551, 1077
HpySE526I ACGT 1 cut(s) 529
Hsp92II CATG 4 cut(s) 39, 634, 895, 1003
HspAI GCGC 1 cut(s) 562
Ksp22I TGATCA 1 cut(s) 52
Kzo9I GATC 4 cut(s) 52, 565, 895, 1124
LmnI GCTCC 5 cut(s) 361, 394, 500, 1102, 1141
Lsp1109I GCAGC 5 cut(s) 80, 718, 786, 1231, 1234
MaeI CTAG 2 cut(s) 1160, 1179
MaeII ACGT 1 cut(s) 529
MaeIII GTNAC 4 cut(s) 30, 205, 821, 843
MalI GATC 4 cut(s) 54, 567, 897, 1126
MboI GATC 4 cut(s) 52, 565, 895, 1124
MboII GAAGA 8 cut(s) 291, 294, 297, 428, 449, 452, 1408, 1411
MflI RGATCY 1 cut(s) 1124
MhlI GDGCHC 1 cut(s) 1146
MlsI TGGCCA 2 cut(s) 1030, 1333
MluNI TGGCCA 2 cut(s) 1030, 1333
MmeI TCCRAC 2 cut(s) 171, 350
Mox20I TGGCCA 2 cut(s) 1030, 1333
MscI TGGCCA 2 cut(s) 1030, 1333
MseI TTAA 5 cut(s) 9, 341, 506, 686, 1265
MslI CAYNNNNRTG 1 cut(s) 739
Msp20I TGGCCA 2 cut(s) 1030, 1333
MspA1I CMGCKG 1 cut(s) 785
MspI CCGG 1 cut(s) 197
MspR9I CCNGG 3 cut(s) 197, 392, 1100
Mva1269I GAATGC 1 cut(s) 734
MvaI CCWGG 2 cut(s) 392, 1100
MvnI CGCG 1 cut(s) 564
MwoI GCNNNNNNNGC 3 cut(s) 362, 394, 1150
NciI CCSGG 1 cut(s) 197
NdeI CATATG 1 cut(s) 988
NdeII GATC 4 cut(s) 52, 565, 895, 1124
NlaIII CATG 4 cut(s) 39, 634, 895, 1003
NlaIV GGNNCC 4 cut(s) 195, 751, 1048, 1143
NmuCI GTSAC 3 cut(s) 205, 821, 843
PctI GAATGC 1 cut(s) 734
PfeI GAWTC 2 cut(s) 318, 570
PflFI GACNNNGTC 1 cut(s) 197
PflMI CCANNNNNTGG 2 cut(s) 788, 914
PfoI TCCNGGA 1 cut(s) 1098
PkrI GCNGC 5 cut(s) 95, 733, 776, 1221, 1224
Ple19I CGATCG 1 cut(s) 568
PshBI ATTAAT 1 cut(s) 341
PsiI TTATAA 2 cut(s) 1109, 1121
Psp6I CCWGG 2 cut(s) 390, 1098
PspGI CCWGG 2 cut(s) 390, 1098
PspN4I GGNNCC 4 cut(s) 195, 751, 1048, 1143
PspPI GGNCC 5 cut(s) 160, 170, 193, 627, 1046
PstI CTGCAG 1 cut(s) 1132
PsuI RGATCY 1 cut(s) 1124
PsyI GACNNNGTC 1 cut(s) 197
PvuI CGATCG 1 cut(s) 568
PvuII CAGCTG 1 cut(s) 785
RsaI GTAC 2 cut(s) 220, 542
RsaNI GTAC 2 cut(s) 219, 541
RseI CAYNNNNRTG 1 cut(s) 739
SaqAI TTAA 5 cut(s) 9, 341, 506, 686, 1265
SatI GCNGC 5 cut(s) 94, 732, 775, 1220, 1223
Sau3AI GATC 4 cut(s) 52, 565, 895, 1124
Sau96I GGNCC 5 cut(s) 160, 170, 193, 627, 1046
ScrFI CCNGG 3 cut(s) 197, 392, 1100
SduI GDGCHC 1 cut(s) 1146
SfcI CTRYAG 2 cut(s) 702, 1128
SinI GGWCC 2 cut(s) 193, 1046
SmiMI CAYNNNNRTG 1 cut(s) 739
SmlI CTYRAG 3 cut(s) 803, 1255, 1345
SmoI CTYRAG 3 cut(s) 803, 1255, 1345
SspMI CTAG 2 cut(s) 1160, 1179
StyD4I CCNGG 3 cut(s) 195, 390, 1098
StyI CCWWGG 1 cut(s) 271
TaaI ACNGT 4 cut(s) 226, 712, 725, 879
TaiI ACGT 1 cut(s) 532
TaqI TCGA 1 cut(s) 568
TatI WGTACW 1 cut(s) 540
TfiI GAWTC 2 cut(s) 318, 570
Tru1I TTAA 5 cut(s) 9, 341, 506, 686, 1265
Tru9I TTAA 5 cut(s) 9, 341, 506, 686, 1265
TscAI CASTG 9 cut(s) 229, 286, 437, 670, 866, 884, 908, 1081, 1137
TseFI GTSAC 3 cut(s) 205, 821, 843
TseI GCWGC 5 cut(s) 93, 731, 774, 1219, 1222
Tsp45I GTSAC 3 cut(s) 205, 821, 843
TspDTI ATGAA 5 cut(s) 682, 940, 1176, 1195, 1299
TspRI CASTG 9 cut(s) 229, 286, 437, 670, 866, 884, 908, 1081, 1137
Tth111I GACNNNGTC 1 cut(s) 197
Van91I CCANNNNNTGG 2 cut(s) 788, 914
VpaK11BI GGWCC 2 cut(s) 193, 1046
VspI ATTAAT 1 cut(s) 341
XapI RAATTY 4 cut(s) 147, 253, 469, 669
XcmI CCANNNNNNNNNTGG 2 cut(s) 187, 765
XspI CTAG 2 cut(s) 1160, 1179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.