Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0011940

Physical Location & Seq

Genomic Coordinates Forward (+)

48396393 .. 48399972

Gene Structure 3580 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025803

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGCCTGAATTCCAAGTCAACATCTTGGAAGCTCAATTTGCCAAGGACACGGCAACATTCTTGGAAGTTCGCGCTCAAGAGCTTGTGGTTGGTGGAATGATGATGCTAATCATGCCAGCTGTCCCAACTGGGATCCCTCATTCCCGTGTTCCAAATGGAGTGATGTTTGGTTTTCTGGGGTCTCTATTCTCATGGATATGGCAAAGGAAAATGGAAGGTGGTGGAGTGTGGGCCGTGCACCCTGTTCTTTTCTCTACCAGCTATTTCACTGGAATTTTCCACTTCATATTGTCTGTAGCAACTGTTTACACATACAGTTCTGCTGCATTCAAGTGTGCTGGAACCCCTCCATTGATAGTCTGGGGCAGCTATCCAGCTGTTGGGAAAGGTGGCCTTGAGAATTATACCTTCTGTCACCTCTGCTCAAAGCCCAAGTCACCAAGAACTCATCACTGCCGAACCTGTCAACAGTGTATATTGGACATGGATCACCACCGCCCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DHHC

Protein Analysis

169

Amino Acids

18.72

Weight (kDa)

8.58

Isoelectric Point (pI)

32.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_7	PF03492	5 - 64	8.3e-09	SAM dependent carboxyl methyltransferase
DHHC	PF01529	135 - 165	1.8e-08	DHHC palmitoyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011940)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18620
fragaria_vesca	FvH4_4g36750
malus_domestica	MD13G1007300.v1.1 MD13G1007400.v1.1 MD16G1000700.v1.1
prunus_persica	Prupe.1G345600_v2.0.a1 Prupe.1G345600_v2.0.a1
pyrus_communis	pycom13g00620 pycom16g00470
rosa_chinensis	RchiOBHm_Chr4g0446471
rosa_laevigata	RLG00000005658 RLG00000025803
rosa_roxburghii	Rroxscaffold_5G00386910
rosa_rugosa	Rorug04G0371700
rosa_samantha	Rh4AG433300 Rh4BG442500 Rh4CG459800 Rh4DG441200
rosa_wichuraiana	Rw4G037020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	380
AccII	CGCG	1 cut(s)	72
AciI	CCGC	1 cut(s)	496
AclWI	GGATC	3 cut(s)	127, 140, 495
AcsI	RAATTY	2 cut(s)	8, 273
AfiI	CCNNNNNNNGG	1 cut(s)	380
AgsI	TTSAA	1 cut(s)	331
AluBI	AGCT	6 cut(s)	32, 82, 119, 261, 369, 377
AluI	AGCT	6 cut(s)	32, 82, 119, 261, 369, 377
Alw21I	GWGCWC	1 cut(s)	240
Alw26I	GTCTC	1 cut(s)	186
Alw44I	GTGCAC	1 cut(s)	236
AlwI	GGATC	3 cut(s)	127, 140, 495
AoxI	GGCC	2 cut(s)	231, 391
ApaLI	GTGCAC	1 cut(s)	236
ApeKI	GCWGC	2 cut(s)	323, 366
ApoI	RAATTY	2 cut(s)	8, 273
ArsI	GACNNNNNNTTYG	2 cut(s)	419, 451
AspLEI	GCGC	1 cut(s)	74
AspS9I	GGNCC	1 cut(s)	231
AsuHPI	GGTGA	3 cut(s)	407, 429, 482
BaeGI	GKGCMC	1 cut(s)	240
BamHI	GGATCC	1 cut(s)	132
Bbv12I	GWGCWC	1 cut(s)	240
BbvI	GCAGC	2 cut(s)	310, 378
BceAI	ACGGC	2 cut(s)	66, 218
BcoDI	GTCTC	1 cut(s)	186
BfmI	CTRYAG	1 cut(s)	294
BisI	GCNGC	2 cut(s)	324, 367
BlsI	GCNGC	2 cut(s)	325, 368
BmgT120I	GGNCC	1 cut(s)	231
BmiI	GGNNCC	2 cut(s)	134, 343
BmrI	ACTGGG	1 cut(s)	138
BmsI	GCATC	1 cut(s)	93
BmuI	ACTGGG	1 cut(s)	138
BpuEI	CTTGAG	2 cut(s)	60, 416
BsaBI	GATNNNNATC	1 cut(s)	107
BsaI	GGTCTC	1 cut(s)	186
BsaJI	CCNNGG	1 cut(s)	42
Bsc4I	CCNNNNNNNGG	1 cut(s)	380
Bse1I	ACTGG	2 cut(s)	133, 274
Bse8I	GATNNNNATC	1 cut(s)	107
BseDI	CCNNGG	1 cut(s)	42
BseJI	GATNNNNATC	1 cut(s)	107
BseLI	CCNNNNNNNGG	1 cut(s)	380
BseNI	ACTGG	2 cut(s)	133, 274
BseSI	GKGCMC	1 cut(s)	240
BseXI	GCAGC	2 cut(s)	310, 378
Bsh1236I	CGCG	1 cut(s)	72
BshFI	GGCC	2 cut(s)	233, 393
BsiHKAI	GWGCWC	1 cut(s)	240
BslFI	GGGAC	1 cut(s)	107
BslI	CCNNNNNNNGG	1 cut(s)	380
BsmAI	GTCTC	1 cut(s)	186
BsmFI	GGGAC	1 cut(s)	107
BsmI	GAATGC	1 cut(s)	326
BsnI	GGCC	2 cut(s)	233, 393
Bso31I	GGTCTC	1 cut(s)	186
Bsp1286I	GDGCHC	1 cut(s)	240
Bsp143I	GATC	2 cut(s)	132, 487
BspACI	CCGC	1 cut(s)	496
BspANI	GGCC	2 cut(s)	233, 393
BspFNI	CGCG	1 cut(s)	72
BspLI	GGNNCC	2 cut(s)	134, 343
BspPI	GGATC	3 cut(s)	127, 140, 495
BspTNI	GGTCTC	1 cut(s)	186
BsrI	ACTGG	2 cut(s)	133, 274
BssECI	CCNNGG	1 cut(s)	42
BssMI	GATC	2 cut(s)	132, 487
BssT1I	CCWWGG	1 cut(s)	42
Bst4CI	ACNGT	3 cut(s)	304, 317, 471
BstC8I	GCNNGC	1 cut(s)	117
BstFNI	CGCG	1 cut(s)	72
BstHHI	GCGC	1 cut(s)	74
BstKTI	GATC	2 cut(s)	135, 490
BstMAI	GTCTC	1 cut(s)	186
BstMBI	GATC	2 cut(s)	132, 487
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 112
BstSFI	CTRYAG	1 cut(s)	294
BstSLI	GKGCMC	1 cut(s)	240
BstUI	CGCG	1 cut(s)	72
BstV1I	GCAGC	2 cut(s)	310, 378
BstX2I	RGATCY	1 cut(s)	132
BstYI	RGATCY	1 cut(s)	132
BsuRI	GGCC	2 cut(s)	233, 393
BtsI	GCAGTG	1 cut(s)	451
BtsIMutI	CAGTG	3 cut(s)	267, 451, 476
Cac8I	GCNNGC	1 cut(s)	117
CfoI	GCGC	1 cut(s)	74
Cfr13I	GGNCC	1 cut(s)	231
CviAII	CATG	3 cut(s)	112, 192, 484
CviJI	RGCY	9 cut(s)	32, 82, 119, 233, 261, 369, 377, 393, 430
CviKI_1	RGCY	9 cut(s)	32, 82, 119, 233, 261, 369, 377, 393, 430
DpnI	GATC	2 cut(s)	134, 489
DpnII	GATC	2 cut(s)	132, 487
Eco130I	CCWWGG	1 cut(s)	42
Eco31I	GGTCTC	1 cut(s)	186
EcoRI	GAATTC	1 cut(s)	8
EcoT14I	CCWWGG	1 cut(s)	42
ErhI	CCWWGG	1 cut(s)	42
FaeI	CATG	3 cut(s)	115, 195, 487
FaiI	YATR	8 cut(s)	113, 193, 199, 287, 313, 405, 476, 485
FalI	AAGNNNNNCTT	2 cut(s)	378, 410
FaqI	GGGAC	1 cut(s)	107
FatI	CATG	3 cut(s)	111, 191, 483
Fnu4HI	GCNGC	2 cut(s)	324, 367
Fsp4HI	GCNGC	2 cut(s)	324, 367
GlaI	GCGC	1 cut(s)	73
GluI	GCNGC	2 cut(s)	324, 367
HaeIII	GGCC	2 cut(s)	233, 393
HhaI	GCGC	1 cut(s)	74
Hin1II	CATG	3 cut(s)	115, 195, 487
Hin6I	GCGC	1 cut(s)	72
HinP1I	GCGC	1 cut(s)	72
HincII	GTYRAC	2 cut(s)	19, 467
HindII	GTYRAC	2 cut(s)	19, 467
HphI	GGTGA	3 cut(s)	407, 429, 482
Hpy166II	GTNNAC	4 cut(s)	19, 238, 307, 467
Hpy188III	TCNNGA	1 cut(s)	77
Hpy8I	GTNNAC	4 cut(s)	19, 238, 307, 467
HpyAV	CCTTC	2 cut(s)	209, 418
HpyCH4III	ACNGT	3 cut(s)	304, 317, 471
HpyCH4V	TGCA	2 cut(s)	238, 326
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 112
Hsp92II	CATG	3 cut(s)	115, 195, 487
HspAI	GCGC	1 cut(s)	72
Kzo9I	GATC	2 cut(s)	132, 487
Lsp1109I	GCAGC	2 cut(s)	310, 378
LweI	GCATC	1 cut(s)	93
MaeIII	GTNAC	2 cut(s)	413, 435
MalI	GATC	2 cut(s)	134, 489
MboI	GATC	2 cut(s)	132, 487
MflI	RGATCY	1 cut(s)	132
MhlI	GDGCHC	1 cut(s)	240
MluCI	AATT	4 cut(s)	8, 35, 273, 400
MnlI	CCTC	3 cut(s)	147, 357, 428
MslI	CAYNNNNRTG	3 cut(s)	144, 196, 331
MspA1I	CMGCKG	2 cut(s)	119, 377
Mva1269I	GAATGC	1 cut(s)	326
MvnI	CGCG	1 cut(s)	72
MwoI	GCNNNNNNNGC	2 cut(s)	38, 112
NdeII	GATC	2 cut(s)	132, 487
NlaIII	CATG	3 cut(s)	115, 195, 487
NlaIV	GGNNCC	2 cut(s)	134, 343
NmuCI	GTSAC	2 cut(s)	413, 435
PctI	GAATGC	1 cut(s)	326
PflMI	CCANNNNNTGG	1 cut(s)	380
PkrI	GCNGC	2 cut(s)	325, 368
PspN4I	GGNNCC	2 cut(s)	134, 343
PspPI	GGNCC	1 cut(s)	231
PsuI	RGATCY	1 cut(s)	132
PvuII	CAGCTG	2 cut(s)	119, 377
RseI	CAYNNNNRTG	3 cut(s)	144, 196, 331
SatI	GCNGC	2 cut(s)	324, 367
Sau3AI	GATC	2 cut(s)	132, 487
Sau96I	GGNCC	1 cut(s)	231
SduI	GDGCHC	1 cut(s)	240
SfaNI	GCATC	1 cut(s)	93
SfcI	CTRYAG	1 cut(s)	294
SmiMI	CAYNNNNRTG	3 cut(s)	144, 196, 331
SmlI	CTYRAG	2 cut(s)	75, 395
SmoI	CTYRAG	2 cut(s)	75, 395
Sse9I	AATT	4 cut(s)	8, 35, 273, 400
SsiI	CCGC	1 cut(s)	496
StyI	CCWWGG	1 cut(s)	42
TaaI	ACNGT	3 cut(s)	304, 317, 471
TasI	AATT	4 cut(s)	8, 35, 273, 400
TscAI	CASTG	3 cut(s)	274, 458, 476
TseFI	GTSAC	2 cut(s)	413, 435
TseI	GCWGC	2 cut(s)	323, 366
Tsp45I	GTSAC	2 cut(s)	413, 435
TspDTI	ATGAA	1 cut(s)	274
TspRI	CASTG	3 cut(s)	274, 458, 476
Van91I	CCANNNNNTGG	1 cut(s)	380
VneI	GTGCAC	1 cut(s)	236
XapI	RAATTY	2 cut(s)	8, 273
XcmI	CCANNNNNNNNNTGG	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.