RLG00000005658

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0011940
Physical Location & Seq
Forward (+)
655670 .. 659395
3726 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005658

Sequence Viewer

Length: 1011 bp
ATGGGAGAGCTGGTAGAGAGAAATGGATGCTTTAGCATAGAGCGAATGGAGTCAACGAGCCCCTGGCTTGTTTCCAAACATTTGAACTCCAACTACGGGAAGACACTGTCGATGGGGCTAAGAGCTGGCATGGAGGGAGTTCTCAAAAGCCATTTTGGAAAATTTCAATCCCTCCTTGGAGACACTGACGATGGAGAACCTTCTTCTTTTTCAGAATTGGGATTCGTTCCAACTTGGATGACATTAATCTCTCAATCTGCTCCAGAGGCAATACCAATTATGGCTGAATTGCCCCAGGAGCATATAACATCAATCAAGGAAGAATATGATGTTCAGTGTTGGGGTTGTGGACTACACCTTCTTCTTCCATCAAATTCTCCACTTTTCAAGTGTGGTTGGTGTGGAGCTTTAACAAATCAAAAGGCAAGAAAACGTGATGTCAAGTACATTTGGCTGAGACGCTGGCGCGATCGAATCTTTGTCTTTATTATCCTCGTATTTATGCTCTTTGTGATATGTGGTGGAGTGTGGGCCATGCACCCTGTTCTTTTCTCTACCAGCTATTTCACTGGAATTTTCCACTCCATCTTAACCTTCATATTTTCTGTAGCAACTGTTTACACATACAGTTCTGCTGCATTCAAGTGTGCTGGAACCCCTCCATTGATAGTCTGGGGCAGCTATCCAGCTGTTGGGAAAGGTGGCCTTGAGAATTATACCTTCTGTCACCTATGCTCAAAGCCCAAGTCACCAAGAACTCATCACTGCCGAACCTGTCGACAGTGTATATTGGACATGGATCACCACTGCCCATTTATTGGGAATTGCGTTGGTGCTAATAACCACCCCCACTTCATTGCCTTACTTATTTCAGTTATCATCAGCACAACATATGTCTCTATCATGGCTGTATATTTAGTAGTGCACCAAGGAGATTTCCTAGCAGATCACTCGGTTCATTACATCCCTCAGTATTCTTTCTATGATTTATGGCCTGCTGCGAAATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHHC

Protein Analysis

337

Amino Acids

37.81

Weight (kDa)

7.92

Isoelectric Point (pI)

39.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 239 - 311 1e-24 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011940)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18620
fragaria_vesca FvH4_4g36750
malus_domestica MD13G1007300.v1.1 MD13G1007400.v1.1 MD16G1000700.v1.1
prunus_persica Prupe.1G345600_v2.0.a1 Prupe.1G345600_v2.0.a1
pyrus_communis pycom13g00620 pycom16g00470
rosa_chinensis RchiOBHm_Chr4g0446471
rosa_laevigata RLG00000005658 RLG00000025803
rosa_roxburghii Rroxscaffold_5G00386910
rosa_rugosa Rorug04G0371700
rosa_samantha Rh4AG433300 Rh4BG442500 Rh4CG459800 Rh4DG441200
rosa_wichuraiana Rw4G037020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1009
AccB7I CCANNNNNTGG 2 cut(s) 692, 818
AccI GTMKAC 1 cut(s) 778
AccII CGCG 1 cut(s) 468
AclWI GGATC 1 cut(s) 807
AcsI RAATTY 3 cut(s) 161, 373, 573
AfaI GTAC 1 cut(s) 446
AfiI CCNNNNNNNGG 3 cut(s) 96, 692, 818
AgsI TTSAA 4 cut(s) 85, 167, 388, 643
AjnI CCWGG 2 cut(s) 62, 294
AluBI AGCT 6 cut(s) 10, 125, 407, 561, 681, 689
AluI AGCT 6 cut(s) 10, 125, 407, 561, 681, 689
Alw21I GWGCWC 1 cut(s) 927
Alw26I GTCTC 3 cut(s) 174, 451, 901
Alw44I GTGCAC 1 cut(s) 923
AlwI GGATC 1 cut(s) 807
AoxI GGCC 3 cut(s) 531, 703, 992
ApaLI GTGCAC 1 cut(s) 923
ApeKI GCWGC 3 cut(s) 635, 678, 998
ApoI RAATTY 3 cut(s) 161, 373, 573
ArsI GACNNNNNNTTYG 2 cut(s) 731, 763
AseI ATTAAT 1 cut(s) 245
AspLEI GCGC 1 cut(s) 468
AspS9I GGNCC 1 cut(s) 531
AsuHPI GGTGA 3 cut(s) 719, 741, 794
BaeGI GKGCMC 1 cut(s) 927
BanII GRGCYC 1 cut(s) 62
BbsI GAAGAC 1 cut(s) 107
Bbv12I GWGCWC 1 cut(s) 927
BbvI GCAGC 3 cut(s) 622, 690, 985
BccI CCATC 4 cut(s) 106, 185, 376, 593
BcgI CGANNNNNNTGC 2 cut(s) 933, 967
BciT130I CCWGG 2 cut(s) 64, 296
BcoDI GTCTC 3 cut(s) 174, 451, 901
BfaI CTAG 1 cut(s) 941
BfmI CTRYAG 1 cut(s) 606
BisI GCNGC 3 cut(s) 636, 679, 999
BlsI GCNGC 3 cut(s) 637, 680, 1000
Bme1390I CCNGG 2 cut(s) 64, 296
BmgT120I GGNCC 1 cut(s) 531
BmiI GGNNCC 1 cut(s) 655
BmrFI CCNGG 2 cut(s) 64, 296
BmsI GCATC 1 cut(s) 17
BpiI GAAGAC 1 cut(s) 107
BpmI CTGGAG 1 cut(s) 246
BpuEI CTTGAG 1 cut(s) 728
BsaJI CCNNGG 4 cut(s) 62, 175, 294, 928
BsaXI ACNNNNNCTCC 1 cut(s) 27
Bsc4I CCNNNNNNNGG 3 cut(s) 96, 692, 818
Bse1I ACTGG 1 cut(s) 574
Bse3DI GCAATG 1 cut(s) 855
BseBI CCWGG 2 cut(s) 64, 296
BseDI CCNNGG 4 cut(s) 62, 175, 294, 928
BseGI GGATG 3 cut(s) 32, 243, 963
BseLI CCNNNNNNNGG 3 cut(s) 96, 692, 818
BseMI GCAATG 1 cut(s) 855
BseMII CTCAG 2 cut(s) 446, 983
BseNI ACTGG 1 cut(s) 574
BseSI GKGCMC 1 cut(s) 927
BseXI GCAGC 3 cut(s) 622, 690, 985
Bsh1236I CGCG 1 cut(s) 468
Bsh1285I CGRYCG 1 cut(s) 472
BshFI GGCC 3 cut(s) 533, 705, 994
BsiEI CGRYCG 1 cut(s) 472
BsiHKAI GWGCWC 1 cut(s) 927
BslI CCNNNNNNNGG 3 cut(s) 96, 692, 818
BsmAI GTCTC 3 cut(s) 174, 451, 901
BsmBI CGTCTC 1 cut(s) 451
BsmI GAATGC 1 cut(s) 638
BsnI GGCC 3 cut(s) 533, 705, 994
Bsp1286I GDGCHC 2 cut(s) 62, 927
Bsp143I GATC 3 cut(s) 469, 799, 946
BspANI GGCC 3 cut(s) 533, 705, 994
BspCNI CTCAG 2 cut(s) 447, 982
BspFNI CGCG 1 cut(s) 468
BspLI GGNNCC 1 cut(s) 655
BspPI GGATC 1 cut(s) 807
BsrDI GCAATG 1 cut(s) 855
BsrI ACTGG 1 cut(s) 574
BssECI CCNNGG 4 cut(s) 62, 175, 294, 928
BssMI GATC 3 cut(s) 469, 799, 946
BssT1I CCWWGG 2 cut(s) 175, 928
Bst2UI CCWGG 2 cut(s) 64, 296
Bst4CI ACNGT 4 cut(s) 108, 616, 629, 783
BstC8I GCNNGC 3 cut(s) 127, 464, 996
BstDEI CTNAG 3 cut(s) 119, 455, 969
BstF5I GGATG 3 cut(s) 32, 243, 963
BstFNI CGCG 1 cut(s) 468
BstHHI GCGC 1 cut(s) 468
BstKTI GATC 3 cut(s) 472, 802, 949
BstMAI GTCTC 3 cut(s) 174, 451, 901
BstMBI GATC 3 cut(s) 469, 799, 946
BstMCI CGRYCG 1 cut(s) 472
BstMWI GCNNNNNNNGC 2 cut(s) 266, 298
BstNI CCWGG 2 cut(s) 64, 296
BstSCI CCNGG 2 cut(s) 62, 294
BstSFI CTRYAG 1 cut(s) 606
BstSLI GKGCMC 1 cut(s) 927
BstUI CGCG 1 cut(s) 468
BstV1I GCAGC 3 cut(s) 622, 690, 985
BstV2I GAAGAC 1 cut(s) 107
BsuRI GGCC 3 cut(s) 533, 705, 994
BtsCI GGATG 3 cut(s) 32, 243, 963
BtsI GCAGTG 2 cut(s) 763, 805
BtsIMutI CAGTG 7 cut(s) 104, 183, 341, 567, 763, 788, 805
Cac8I GCNNGC 3 cut(s) 127, 464, 996
CfoI GCGC 1 cut(s) 468
Cfr13I GGNCC 1 cut(s) 531
CseI GACGC 1 cut(s) 468
Csp6I GTAC 1 cut(s) 445
CviAII CATG 4 cut(s) 130, 535, 796, 904
CviQI GTAC 1 cut(s) 445
DdeI CTNAG 3 cut(s) 119, 455, 969
DpnI GATC 3 cut(s) 471, 801, 948
DpnII GATC 3 cut(s) 469, 799, 946
Eco130I CCWWGG 2 cut(s) 175, 928
Eco24I GRGCYC 1 cut(s) 62
EcoRII CCWGG 2 cut(s) 62, 294
EcoT14I CCWWGG 2 cut(s) 175, 928
EcoT38I GRGCYC 1 cut(s) 62
ErhI CCWWGG 2 cut(s) 175, 928
Esp3I CGTCTC 1 cut(s) 451
FaeI CATG 4 cut(s) 133, 538, 799, 907
FalI AAGNNNNNCTT 2 cut(s) 690, 722
FatI CATG 4 cut(s) 129, 534, 795, 903
FauNDI CATATG 1 cut(s) 892
FblI GTMKAC 1 cut(s) 778
Fnu4HI GCNGC 3 cut(s) 636, 679, 999
FokI GGATG 3 cut(s) 39, 250, 950
FriOI GRGCYC 1 cut(s) 62
Fsp4HI GCNGC 3 cut(s) 636, 679, 999
FspBI CTAG 1 cut(s) 941
GlaI GCGC 1 cut(s) 467
GluI GCNGC 3 cut(s) 636, 679, 999
GsuI CTGGAG 1 cut(s) 246
HaeIII GGCC 3 cut(s) 533, 705, 994
HgaI GACGC 1 cut(s) 468
HhaI GCGC 1 cut(s) 468
Hin1II CATG 4 cut(s) 133, 538, 799, 907
Hin6I GCGC 1 cut(s) 466
HinP1I GCGC 1 cut(s) 466
HincII GTYRAC 2 cut(s) 54, 779
HindII GTYRAC 2 cut(s) 54, 779
HinfI GANTC 3 cut(s) 50, 222, 474
HphI GGTGA 3 cut(s) 719, 741, 794
Hpy166II GTNNAC 5 cut(s) 54, 350, 619, 779, 925
Hpy188I TCNGA 1 cut(s) 214
Hpy188III TCNNGA 1 cut(s) 263
Hpy8I GTNNAC 5 cut(s) 54, 350, 619, 779, 925
HpyAV CCTTC 4 cut(s) 210, 368, 604, 730
HpyCH4III ACNGT 4 cut(s) 108, 616, 629, 783
HpyCH4IV ACGT 1 cut(s) 433
HpyCH4V TGCA 3 cut(s) 538, 638, 925
HpyF10VI GCNNNNNNNGC 2 cut(s) 266, 298
HpyF3I CTNAG 3 cut(s) 119, 455, 969
HpySE526I ACGT 1 cut(s) 433
Hsp92II CATG 4 cut(s) 133, 538, 799, 907
HspAI GCGC 1 cut(s) 466
Kzo9I GATC 3 cut(s) 469, 799, 946
LmnI GCTCC 3 cut(s) 265, 298, 404
Lsp1109I GCAGC 3 cut(s) 622, 690, 985
LweI GCATC 1 cut(s) 17
MaeI CTAG 1 cut(s) 941
MaeII ACGT 1 cut(s) 433
MaeIII GTNAC 2 cut(s) 725, 747
MalI GATC 3 cut(s) 471, 801, 948
MboI GATC 3 cut(s) 469, 799, 946
MboII GAAGA 5 cut(s) 112, 195, 332, 353, 356
MhlI GDGCHC 2 cut(s) 62, 927
MluCI AATT 9 cut(s) 161, 215, 276, 287, 373, 573, 712, 823, 1004
MlyI GAGTC 1 cut(s) 59
MmeI TCCRAC 2 cut(s) 114, 254
MnlI CCTC 6 cut(s) 127, 182, 259, 503, 669, 978
MseI TTAA 3 cut(s) 245, 410, 590
MslI CAYNNNNRTG 1 cut(s) 643
MspA1I CMGCKG 1 cut(s) 689
MspR9I CCNGG 2 cut(s) 64, 296
Mva1269I GAATGC 1 cut(s) 638
MvaI CCWGG 2 cut(s) 64, 296
MvnI CGCG 1 cut(s) 468
MwoI GCNNNNNNNGC 2 cut(s) 266, 298
NdeI CATATG 1 cut(s) 892
NdeII GATC 3 cut(s) 469, 799, 946
NlaIII CATG 4 cut(s) 133, 538, 799, 907
NlaIV GGNNCC 1 cut(s) 655
NmuCI GTSAC 2 cut(s) 725, 747
PctI GAATGC 1 cut(s) 638
PfeI GAWTC 2 cut(s) 222, 474
PflFI GACNNNGTC 1 cut(s) 106
PflMI CCANNNNNTGG 2 cut(s) 692, 818
PkrI GCNGC 3 cut(s) 637, 680, 1000
Ple19I CGATCG 1 cut(s) 472
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
PshBI ATTAAT 1 cut(s) 245
PsiI TTATAA 1 cut(s) 1009
Psp6I CCWGG 2 cut(s) 62, 294
PspGI CCWGG 2 cut(s) 62, 294
PspN4I GGNNCC 1 cut(s) 655
PspPI GGNCC 1 cut(s) 531
PsrI GAACNNNNNNTAC 2 cut(s) 77, 109
PsyI GACNNNGTC 1 cut(s) 106
PvuI CGATCG 1 cut(s) 472
PvuII CAGCTG 1 cut(s) 689
RsaI GTAC 1 cut(s) 446
RsaNI GTAC 1 cut(s) 445
RseI CAYNNNNRTG 1 cut(s) 643
SalI GTCGAC 1 cut(s) 777
SaqAI TTAA 3 cut(s) 245, 410, 590
SatI GCNGC 3 cut(s) 636, 679, 999
Sau3AI GATC 3 cut(s) 469, 799, 946
Sau96I GGNCC 1 cut(s) 531
SchI GAGTC 1 cut(s) 59
ScrFI CCNGG 2 cut(s) 64, 296
SduI GDGCHC 2 cut(s) 62, 927
SfaNI GCATC 1 cut(s) 17
SfcI CTRYAG 1 cut(s) 606
SmiMI CAYNNNNRTG 1 cut(s) 643
SmlI CTYRAG 1 cut(s) 707
SmoI CTYRAG 1 cut(s) 707
Sse9I AATT 9 cut(s) 161, 215, 276, 287, 373, 573, 712, 823, 1004
SspMI CTAG 1 cut(s) 941
StyD4I CCNGG 2 cut(s) 62, 294
StyI CCWWGG 2 cut(s) 175, 928
TaaI ACNGT 4 cut(s) 108, 616, 629, 783
TaiI ACGT 1 cut(s) 436
TaqI TCGA 3 cut(s) 110, 472, 778
TasI AATT 9 cut(s) 161, 215, 276, 287, 373, 573, 712, 823, 1004
TatI WGTACW 1 cut(s) 444
TfiI GAWTC 2 cut(s) 222, 474
Tru1I TTAA 3 cut(s) 245, 410, 590
Tru9I TTAA 3 cut(s) 245, 410, 590
TscAI CASTG 7 cut(s) 111, 190, 341, 574, 770, 788, 812
TseFI GTSAC 2 cut(s) 725, 747
TseI GCWGC 3 cut(s) 635, 678, 998
Tsp45I GTSAC 2 cut(s) 725, 747
TspDTI ATGAA 3 cut(s) 586, 844, 947
TspRI CASTG 7 cut(s) 111, 190, 341, 574, 770, 788, 812
Tth111I GACNNNGTC 1 cut(s) 106
Van91I CCANNNNNTGG 2 cut(s) 692, 818
VneI GTGCAC 1 cut(s) 923
VspI ATTAAT 1 cut(s) 245
XapI RAATTY 3 cut(s) 161, 373, 573
XcmI CCANNNNNNNNNTGG 1 cut(s) 669
XmiI GTMKAC 1 cut(s) 778
XspI CTAG 1 cut(s) 941
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.