Rorug04G0371700

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0011940
Physical Location & Seq
Reverse (-)
54307144 .. 54308072
929 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0371700.1

Sequence Viewer

Length: 768 bp
ATGGCTTCGACTCTGATGGCCCTGGTTTTGACCTGTCTCACCTTTCAACTAGTCCTTACCAATGCACAAACACCAGCAGCTGCACCCGCTACGGCTACAACGCCGCCGCCACCTACCACACCAATTGCACCAGCTGCGCAACCACCGACTACTGTAACACCACCCCCAGTAACTGCAGCAGCAACCCCACCCACAACCCCGCCAACAACATCACCACCCCCTAAAGTTGCACCATCCACAAGCCCGACAGTCCCACCCCCAAAAACTCCACCAGCACAACCACCAAAGATTTCACCTGTCTCAACTCCATCTCAGCCACCAACACTGCCACCACCACTACCACCTCCACAAGTAGCACCACAGGTATCCCCAACCCCAGCTCCTGTTAAGAAATCGCCAGCGCCAGCACCAGTCAAGGCAGCACCAGTGCCCTCACCATCACAAGCACCGCCAGTACCAGCGCCAACACCAGTTGTCGCAGAACCAGCTCCAGCCCCTGTGGAAGTGCCGTCACCTGCACCTGCTCCACATAAACACAAGAAAAGGAAGCACAAGCACAGGAGGCATCATCATGCACCAGCACCGGCGCCAACTGTCCAAAGTCCCCCAGCCCCACCTATAGTGACAGAGACAGAGGATACAACACCAGCACCATCACCAACTTTGGATTTGAGCGGAGGAAATGCACTGCACCAGAAAGGAGCAAAGTCTGCTATTTGGATTACGACTGGATTAGCTATTGCTATACTGCTGGCAATGACAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHHC

Protein Analysis

255

Amino Acids

25.58

Weight (kDa)

10.21

Isoelectric Point (pI)

98.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011940)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18620
fragaria_vesca FvH4_4g36750
malus_domestica MD13G1007300.v1.1 MD13G1007400.v1.1 MD16G1000700.v1.1
prunus_persica Prupe.1G345600_v2.0.a1 Prupe.1G345600_v2.0.a1
pyrus_communis pycom13g00620 pycom16g00470
rosa_chinensis RchiOBHm_Chr4g0446471
rosa_laevigata RLG00000005658 RLG00000025803
rosa_roxburghii Rroxscaffold_5G00386910
rosa_rugosa Rorug04G0371700
rosa_samantha Rh4AG433300 Rh4BG442500 Rh4CG459800 Rh4DG441200
rosa_wichuraiana Rw4G037020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 523, 529
Acc16I TGCGCA 1 cut(s) 138
Acc36I ACCTGC 2 cut(s) 523, 529
AccB1I GGYRCC 1 cut(s) 586
AccBSI CCGCTC 1 cut(s) 675
AciI CCGC 6 cut(s) 87, 104, 107, 200, 449, 675
AcyI GRCGYC 1 cut(s) 587
AfaI GTAC 1 cut(s) 456
AgsI TTSAA 1 cut(s) 47
AhlI ACTAGT 1 cut(s) 49
AjnI CCWGG 1 cut(s) 21
AluBI AGCT 6 cut(s) 80, 134, 380, 488, 737, 765
AluI AGCT 6 cut(s) 80, 134, 380, 488, 737, 765
Alw26I GTCTC 3 cut(s) 41, 304, 623
AlwNI CAGNNNCTG 4 cut(s) 80, 173, 383, 497
AoxI GGCC 1 cut(s) 18
ApeKI GCWGC 6 cut(s) 77, 80, 134, 176, 179, 419
AspLEI GCGC 4 cut(s) 139, 403, 463, 589
AspS9I GGNCC 1 cut(s) 19
AsuHPI GGTGA 6 cut(s) 31, 204, 285, 426, 504, 648
BaeGI GKGCMC 1 cut(s) 432
BanI GGYRCC 1 cut(s) 586
BbvI GCAGC 6 cut(s) 67, 89, 121, 188, 191, 431
BccI CCATC 5 cut(s) 10, 241, 316, 445, 661
BceAI ACGGC 2 cut(s) 108, 493
BciT130I CCWGG 1 cut(s) 23
BciVI GTATCC 2 cut(s) 376, 631
BcoDI GTCTC 3 cut(s) 41, 304, 623
BcuI ACTAGT 1 cut(s) 49
BfaI CTAG 2 cut(s) 50, 766
BfmI CTRYAG 2 cut(s) 174, 618
BfoI RGCGCY 3 cut(s) 404, 464, 590
BfuAI ACCTGC 2 cut(s) 523, 529
BfuI GTATCC 2 cut(s) 376, 631
BisI GCNGC 8 cut(s) 78, 81, 104, 107, 135, 177, 180, 420
BlsI GCNGC 8 cut(s) 79, 82, 105, 108, 136, 178, 181, 421
Bme1390I CCNGG 1 cut(s) 23
BmgT120I GGNCC 1 cut(s) 19
BmiI GGNNCC 1 cut(s) 588
BmrFI CCNGG 1 cut(s) 23
BmrI ACTGGG 1 cut(s) 161
BmsI GCATC 1 cut(s) 574
BmuI ACTGGG 1 cut(s) 161
BpmI CTGGAG 1 cut(s) 474
BsaHI GRCGYC 1 cut(s) 587
BsaJI CCNNGG 1 cut(s) 21
BsaXI ACNNNNNCTCC 2 cut(s) 364, 394
Bse118I RCCGGY 1 cut(s) 583
Bse1I ACTGG 6 cut(s) 167, 410, 425, 452, 470, 733
Bse3DI GCAATG 1 cut(s) 762
BseBI CCWGG 1 cut(s) 23
BseDI CCNNGG 1 cut(s) 21
BseGI GGATG 1 cut(s) 233
BseMI GCAATG 1 cut(s) 762
BseMII CTCAG 1 cut(s) 326
BseNI ACTGG 6 cut(s) 167, 410, 425, 452, 470, 733
BseSI GKGCMC 1 cut(s) 432
BseXI GCAGC 6 cut(s) 67, 89, 121, 188, 191, 431
BseYI CCCAGC 2 cut(s) 376, 607
BsgI GTGCAG 3 cut(s) 66, 501, 674
BshFI GGCC 1 cut(s) 20
BshNI GGYRCC 1 cut(s) 586
BsiSI CCGG 1 cut(s) 584
BslFI GGGAC 2 cut(s) 236, 588
BsmAI GTCTC 3 cut(s) 41, 304, 623
BsmFI GGGAC 2 cut(s) 236, 588
BsnI GGCC 1 cut(s) 20
Bsp1286I GDGCHC 1 cut(s) 432
BspACI CCGC 6 cut(s) 87, 104, 107, 200, 449, 675
BspANI GGCC 1 cut(s) 20
BspCNI CTCAG 1 cut(s) 325
BspLI GGNNCC 1 cut(s) 588
BspMAI CTGCAG 1 cut(s) 178
BspMI ACCTGC 2 cut(s) 523, 529
BspT107I GGYRCC 1 cut(s) 586
BsrBI CCGCTC 1 cut(s) 675
BsrDI GCAATG 1 cut(s) 762
BsrFI RCCGGY 1 cut(s) 583
BsrI ACTGG 6 cut(s) 167, 410, 425, 452, 470, 733
BssAI RCCGGY 1 cut(s) 583
BssECI CCNNGG 1 cut(s) 21
BssNI GRCGYC 1 cut(s) 587
Bst2UI CCWGG 1 cut(s) 23
Bst4CI ACNGT 3 cut(s) 154, 250, 595
BstACI GRCGYC 1 cut(s) 587
BstAPI GCANNNNNTGC 2 cut(s) 134, 710
BstC8I GCNNGC 3 cut(s) 399, 405, 753
BstDEI CTNAG 1 cut(s) 312
BstF5I GGATG 1 cut(s) 233
BstH2I RGCGCY 3 cut(s) 404, 464, 590
BstHHI GCGC 4 cut(s) 139, 403, 463, 589
BstMAI GTCTC 3 cut(s) 41, 304, 623
BstMWI GCNNNNNNNGC 5 cut(s) 86, 134, 485, 562, 710
BstNI CCWGG 1 cut(s) 23
BstSCI CCNGG 1 cut(s) 21
BstSFI CTRYAG 2 cut(s) 174, 618
BstSLI GKGCMC 1 cut(s) 432
BstV1I GCAGC 6 cut(s) 67, 89, 121, 188, 191, 431
BsuI GTATCC 2 cut(s) 376, 631
BsuRI GGCC 1 cut(s) 20
BtsCI GGATG 1 cut(s) 233
BtsI GCAGTG 2 cut(s) 323, 686
BtsIMutI CAGTG 3 cut(s) 323, 432, 686
BveI ACCTGC 2 cut(s) 523, 529
Cac8I GCNNGC 3 cut(s) 399, 405, 753
CaiI CAGNNNCTG 4 cut(s) 80, 173, 383, 497
CfoI GCGC 4 cut(s) 139, 403, 463, 589
Cfr10I RCCGGY 1 cut(s) 583
Cfr13I GGNCC 1 cut(s) 19
Csp6I GTAC 1 cut(s) 455
CspCI CAANNNNNGTGG 2 cut(s) 106, 141
CviAII CATG 1 cut(s) 572
CviQI GTAC 1 cut(s) 455
DdeI CTNAG 1 cut(s) 312
DinI GGCGCC 1 cut(s) 588
EcoRII CCWGG 1 cut(s) 21
EgeI GGCGCC 1 cut(s) 588
EheI GGCGCC 1 cut(s) 588
FaeI CATG 1 cut(s) 575
FaiI YATR 4 cut(s) 531, 573, 620, 746
FaqI GGGAC 2 cut(s) 236, 588
FatI CATG 1 cut(s) 571
FauI CCCGC 2 cut(s) 94, 207
Fnu4HI GCNGC 8 cut(s) 78, 81, 104, 107, 135, 177, 180, 420
FokI GGATG 1 cut(s) 220
Fsp4HI GCNGC 8 cut(s) 78, 81, 104, 107, 135, 177, 180, 420
FspBI CTAG 2 cut(s) 50, 766
FspI TGCGCA 1 cut(s) 138
GlaI GCGC 4 cut(s) 138, 402, 462, 588
GluI GCNGC 8 cut(s) 78, 81, 104, 107, 135, 177, 180, 420
GsaI CCCAGC 2 cut(s) 380, 611
GsuI CTGGAG 1 cut(s) 474
HaeII RGCGCY 3 cut(s) 404, 464, 590
HaeIII GGCC 1 cut(s) 20
HapII CCGG 1 cut(s) 584
HhaI GCGC 4 cut(s) 139, 403, 463, 589
Hin1I GRCGYC 1 cut(s) 587
Hin1II CATG 1 cut(s) 575
Hin6I GCGC 4 cut(s) 137, 401, 461, 587
HinP1I GCGC 4 cut(s) 137, 401, 461, 587
HinfI GANTC 1 cut(s) 10
HpaII CCGG 1 cut(s) 584
HphI GGTGA 6 cut(s) 31, 204, 285, 426, 504, 648
Hpy188I TCNGA 1 cut(s) 15
HpyCH4III ACNGT 3 cut(s) 154, 250, 595
HpyCH4V TGCA 9 cut(s) 65, 83, 128, 176, 230, 518, 575, 686, 691
HpyF10VI GCNNNNNNNGC 5 cut(s) 86, 134, 485, 562, 710
HpyF3I CTNAG 1 cut(s) 312
Hsp92I GRCGYC 1 cut(s) 587
Hsp92II CATG 1 cut(s) 575
HspAI GCGC 4 cut(s) 137, 401, 461, 587
KasI GGCGCC 1 cut(s) 586
LmnI GCTCC 4 cut(s) 385, 493, 529, 701
Lsp1109I GCAGC 6 cut(s) 67, 89, 121, 188, 191, 431
LweI GCATC 1 cut(s) 574
MaeI CTAG 2 cut(s) 50, 766
MaeIII GTNAC 4 cut(s) 154, 169, 510, 622
MbiI CCGCTC 1 cut(s) 675
MfeI CAATTG 1 cut(s) 123
MhlI GDGCHC 1 cut(s) 432
MluCI AATT 1 cut(s) 123
Mly113I GGCGCC 1 cut(s) 587
MlyI GAGTC 1 cut(s) 4
MnlI CCTC 5 cut(s) 354, 442, 555, 628, 671
MseI TTAA 1 cut(s) 387
MslI CAYNNNNRTG 1 cut(s) 570
MspA1I CMGCKG 2 cut(s) 80, 134
MspI CCGG 1 cut(s) 584
MspR9I CCNGG 1 cut(s) 23
MunI CAATTG 1 cut(s) 123
MvaI CCWGG 1 cut(s) 23
MwoI GCNNNNNNNGC 5 cut(s) 86, 134, 485, 562, 710
NarI GGCGCC 1 cut(s) 587
NlaIII CATG 1 cut(s) 575
NlaIV GGNNCC 1 cut(s) 588
NmuCI GTSAC 2 cut(s) 510, 622
NsbI TGCGCA 1 cut(s) 138
PaqCI CACCTGC 2 cut(s) 523, 529
PkrI GCNGC 8 cut(s) 79, 82, 105, 108, 136, 178, 181, 421
PleI GAGTC 1 cut(s) 4
PluTI GGCGCC 1 cut(s) 590
PpsI GAGTC 1 cut(s) 4
Psp6I CCWGG 1 cut(s) 21
PspFI CCCAGC 2 cut(s) 376, 607
PspGI CCWGG 1 cut(s) 21
PspN4I GGNNCC 1 cut(s) 588
PspPI GGNCC 1 cut(s) 19
PstI CTGCAG 1 cut(s) 178
PstNI CAGNNNCTG 4 cut(s) 80, 173, 383, 497
PvuII CAGCTG 2 cut(s) 80, 134
RsaI GTAC 1 cut(s) 456
RsaNI GTAC 1 cut(s) 455
RseI CAYNNNNRTG 1 cut(s) 570
SaqAI TTAA 1 cut(s) 387
SatI GCNGC 8 cut(s) 78, 81, 104, 107, 135, 177, 180, 420
Sau96I GGNCC 1 cut(s) 19
SchI GAGTC 1 cut(s) 4
ScrFI CCNGG 1 cut(s) 23
SduI GDGCHC 1 cut(s) 432
SfaNI GCATC 1 cut(s) 574
SfcI CTRYAG 2 cut(s) 174, 618
SfoI GGCGCC 1 cut(s) 588
SgrAI CRCCGGYG 1 cut(s) 583
SmiMI CAYNNNNRTG 1 cut(s) 570
SpeI ACTAGT 1 cut(s) 49
Sse9I AATT 1 cut(s) 123
SsiI CCGC 6 cut(s) 87, 104, 107, 200, 449, 675
SspDI GGCGCC 1 cut(s) 586
SspMI CTAG 2 cut(s) 50, 766
StyD4I CCNGG 1 cut(s) 21
TaaI ACNGT 3 cut(s) 154, 250, 595
TaqI TCGA 1 cut(s) 8
TasI AATT 1 cut(s) 123
TauI GCSGC 2 cut(s) 106, 109
Tru1I TTAA 1 cut(s) 387
Tru9I TTAA 1 cut(s) 387
TscAI CASTG 3 cut(s) 330, 432, 693
TseFI GTSAC 2 cut(s) 510, 622
TseI GCWGC 6 cut(s) 77, 80, 134, 176, 179, 419
Tsp45I GTSAC 2 cut(s) 510, 622
TspRI CASTG 3 cut(s) 330, 432, 693
XspI CTAG 2 cut(s) 50, 766
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.