pycom13g00620

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0011940
Physical Location & Seq
Forward (+)
390040 .. 391782
1743 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g00620.2

Sequence Viewer

Length: 621 bp
ATGGCAATTTCAATCTCTGTATCCTCTGAAGCTGCTCCAACGGCAATGCCAACCATGGCCGACTTGCCCAAGGAGCATTTTATAGCATCCATCAAGGACGACTATGACGTCACGTGTTGGGGTTGTGGATTACACCTTGTTCTTCCATCAAATGCTCCAATTTTCAAGTGTGGTTGGTGTGGAGCTTTAACAAATCAGAATGCGGGGAAACGTGAATGCAAATACTTTTGGTTGAGACGCTTGCGGGATCGCTGCTTAGTCAGTATCCTGTTCATGTTTATGCTATTTTTGATATGTGGTGGAGTGTGGGCGCTGTTCCCTGTTCTTTTCGATATCAGCTATTTCCATGGAATTTTTCACTCCATCATTACCTTCATGTTATCTGTAGCCACTGTTTATACATTCAGTTCTGCTTCATTTGCGTGTGCTGGAACACCTCCGTACAGAGTGTGGGGAAGCTATCCAGCTGTGGGGAAAGGTGACCTCGATAATTATACCTTCTGTCACCAATGCTCAAAGCCAAAGTCGCCTAGCACTCATCATTGCCGGTCCTGTGGAATGTGTACATTGGACATGGATCGATCATTGCCCATTTATTGGGAATTGTGTTGGTGCGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHHC

Protein Analysis

207

Amino Acids

23.12

Weight (kDa)

7.89

Isoelectric Point (pI)

44.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011940)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18620
fragaria_vesca FvH4_4g36750
malus_domestica MD13G1007300.v1.1 MD13G1007400.v1.1 MD16G1000700.v1.1
prunus_persica Prupe.1G345600_v2.0.a1 Prupe.1G345600_v2.0.a1
pyrus_communis pycom13g00620 pycom16g00470
rosa_chinensis RchiOBHm_Chr4g0446471
rosa_laevigata RLG00000005658 RLG00000025803
rosa_roxburghii Rroxscaffold_5G00386910
rosa_rugosa Rorug04G0371700
rosa_samantha Rh4AG433300 Rh4BG442500 Rh4CG459800 Rh4DG441200
rosa_wichuraiana Rw4G037020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 107
AatII GACGTC 1 cut(s) 111
AccB7I CCANNNNNTGG 1 cut(s) 597
AciI CCGC 2 cut(s) 203, 244
AclWI GGATC 2 cut(s) 255, 585
AcoI YGGCCR 1 cut(s) 57
AcsI RAATTY 1 cut(s) 351
AcuI CTGAAG 1 cut(s) 48
AcvI CACGTG 1 cut(s) 114
AcyI GRCGYC 1 cut(s) 108
AfaI GTAC 2 cut(s) 443, 565
AfiI CCNNNNNNNGG 2 cut(s) 470, 597
AflIII ACRYGT 1 cut(s) 113
AgsI TTSAA 2 cut(s) 12, 166
AluBI AGCT 5 cut(s) 32, 185, 339, 459, 467
AluI AGCT 5 cut(s) 32, 185, 339, 459, 467
Alw26I GTCTC 1 cut(s) 229
AlwI GGATC 2 cut(s) 255, 585
AoxI GGCC 1 cut(s) 57
ApeKI GCWGC 2 cut(s) 32, 252
ApoI RAATTY 1 cut(s) 351
ArsI GACNNNNNNTTYG 2 cut(s) 509, 541
AspLEI GCGC 1 cut(s) 313
AspS9I GGNCC 1 cut(s) 549
AsuHPI GGTGA 2 cut(s) 491, 497
AvaII GGWCC 1 cut(s) 549
BbrPI CACGTG 1 cut(s) 114
BbvI GCAGC 2 cut(s) 19, 239
BccI CCATC 3 cut(s) 98, 154, 371
BceAI ACGGC 1 cut(s) 57
BciVI GTATCC 2 cut(s) 31, 275
BcoDI GTCTC 1 cut(s) 229
BfaI CTAG 1 cut(s) 531
BfmI CTRYAG 1 cut(s) 384
BfoI RGCGCY 1 cut(s) 314
BfuI GTATCC 2 cut(s) 31, 275
BisI GCNGC 2 cut(s) 33, 253
BlsI GCNGC 2 cut(s) 34, 254
Bme18I GGWCC 1 cut(s) 549
BmgT120I GGNCC 1 cut(s) 549
BmsI GCATC 1 cut(s) 95
Bsa29I ATCGAT 1 cut(s) 580
BsaAI YACGTR 1 cut(s) 114
BsaHI GRCGYC 1 cut(s) 108
BsaJI CCNNGG 3 cut(s) 54, 69, 346
Bsc4I CCNNNNNNNGG 2 cut(s) 470, 597
Bse118I RCCGGY 1 cut(s) 546
Bse3DI GCAATG 3 cut(s) 51, 541, 584
BseCI ATCGAT 1 cut(s) 580
BseDI CCNNGG 3 cut(s) 54, 69, 346
BseGI GGATG 1 cut(s) 86
BseLI CCNNNNNNNGG 2 cut(s) 470, 597
BseMI GCAATG 3 cut(s) 51, 541, 584
BseXI GCAGC 2 cut(s) 19, 239
BshFI GGCC 1 cut(s) 59
BshVI ATCGAT 1 cut(s) 580
BsiSI CCGG 1 cut(s) 547
BslI CCNNNNNNNGG 2 cut(s) 470, 597
BsmAI GTCTC 1 cut(s) 229
BsmBI CGTCTC 1 cut(s) 229
BsmI GAATGC 2 cut(s) 205, 221
BsnI GGCC 1 cut(s) 59
Bsp1407I TGTACA 1 cut(s) 563
Bsp143I GATC 3 cut(s) 247, 577, 581
Bsp19I CCATGG 2 cut(s) 54, 346
BspACI CCGC 2 cut(s) 203, 244
BspANI GGCC 1 cut(s) 59
BspDI ATCGAT 1 cut(s) 580
BspPI GGATC 2 cut(s) 255, 585
BsrDI GCAATG 3 cut(s) 51, 541, 584
BsrFI RCCGGY 1 cut(s) 546
BsrGI TGTACA 1 cut(s) 563
BssAI RCCGGY 1 cut(s) 546
BssECI CCNNGG 3 cut(s) 54, 69, 346
BssMI GATC 3 cut(s) 247, 577, 581
BssNI GRCGYC 1 cut(s) 108
BssT1I CCWWGG 3 cut(s) 54, 69, 346
Bst4CI ACNGT 1 cut(s) 394
BstACI GRCGYC 1 cut(s) 108
BstAUI TGTACA 1 cut(s) 563
BstBAI YACGTR 1 cut(s) 114
BstC8I GCNNGC 1 cut(s) 242
BstDEI CTNAG 1 cut(s) 256
BstDSI CCRYGG 2 cut(s) 54, 346
BstEII GGTNACC 1 cut(s) 479
BstF5I GGATG 1 cut(s) 86
BstH2I RGCGCY 1 cut(s) 314
BstHHI GCGC 1 cut(s) 313
BstKTI GATC 3 cut(s) 250, 580, 584
BstMAI GTCTC 1 cut(s) 229
BstMBI GATC 3 cut(s) 247, 577, 581
BstMWI GCNNNNNNNGC 4 cut(s) 41, 73, 419, 526
BstPI GGTNACC 1 cut(s) 479
BstSFI CTRYAG 1 cut(s) 384
BstV1I GCAGC 2 cut(s) 19, 239
Bsu15I ATCGAT 1 cut(s) 580
BsuI GTATCC 2 cut(s) 31, 275
BsuRI GGCC 1 cut(s) 59
BsuTUI ATCGAT 1 cut(s) 580
BtgI CCRYGG 2 cut(s) 54, 346
BtsCI GGATG 1 cut(s) 86
BtsIMutI CAGTG 1 cut(s) 390
Cac8I GCNNGC 1 cut(s) 242
CfoI GCGC 1 cut(s) 313
Cfr10I RCCGGY 1 cut(s) 546
Cfr13I GGNCC 1 cut(s) 549
ClaI ATCGAT 1 cut(s) 580
CseI GACGC 2 cut(s) 246, 604
Csp6I GTAC 2 cut(s) 442, 564
CviAII CATG 5 cut(s) 55, 274, 347, 376, 574
CviJI RGCY 8 cut(s) 32, 59, 185, 339, 389, 459, 467, 520
CviKI_1 RGCY 8 cut(s) 32, 59, 185, 339, 389, 459, 467, 520
CviQI GTAC 2 cut(s) 442, 564
DdeI CTNAG 1 cut(s) 256
DpnI GATC 3 cut(s) 249, 579, 583
DpnII GATC 3 cut(s) 247, 577, 581
DrdI GACNNNNNNGTC 1 cut(s) 107
DseDI GACNNNNNNGTC 1 cut(s) 107
EaeI YGGCCR 1 cut(s) 57
Eco130I CCWWGG 3 cut(s) 54, 69, 346
Eco32I GATATC 1 cut(s) 334
Eco47I GGWCC 1 cut(s) 549
Eco57I CTGAAG 1 cut(s) 48
Eco72I CACGTG 1 cut(s) 114
Eco91I GGTNACC 1 cut(s) 479
EcoO65I GGTNACC 1 cut(s) 479
EcoRV GATATC 1 cut(s) 334
EcoT14I CCWWGG 3 cut(s) 54, 69, 346
ErhI CCWWGG 3 cut(s) 54, 69, 346
Esp3I CGTCTC 1 cut(s) 229
FaeI CATG 5 cut(s) 58, 277, 350, 379, 577
FatI CATG 5 cut(s) 54, 273, 346, 375, 573
FauI CCCGC 2 cut(s) 196, 237
Fnu4HI GCNGC 2 cut(s) 33, 253
FokI GGATG 1 cut(s) 73
Fsp4HI GCNGC 2 cut(s) 33, 253
FspBI CTAG 1 cut(s) 531
GlaI GCGC 1 cut(s) 312
GluI GCNGC 2 cut(s) 33, 253
HaeII RGCGCY 1 cut(s) 314
HaeIII GGCC 1 cut(s) 59
HapII CCGG 1 cut(s) 547
HgaI GACGC 2 cut(s) 246, 604
HhaI GCGC 1 cut(s) 313
Hin1I GRCGYC 1 cut(s) 108
Hin1II CATG 5 cut(s) 58, 277, 350, 379, 577
Hin6I GCGC 1 cut(s) 311
HinP1I GCGC 1 cut(s) 311
HpaII CCGG 1 cut(s) 547
HphI GGTGA 2 cut(s) 491, 497
Hpy166II GTNNAC 1 cut(s) 564
Hpy188I TCNGA 2 cut(s) 28, 198
Hpy8I GTNNAC 1 cut(s) 564
HpyAV CCTTC 2 cut(s) 382, 508
HpyCH4III ACNGT 1 cut(s) 394
HpyCH4IV ACGT 3 cut(s) 108, 113, 211
HpyCH4V TGCA 1 cut(s) 219
HpyF10VI GCNNNNNNNGC 4 cut(s) 41, 73, 419, 526
HpyF3I CTNAG 1 cut(s) 256
HpySE526I ACGT 3 cut(s) 108, 113, 211
Hsp92I GRCGYC 1 cut(s) 108
Hsp92II CATG 5 cut(s) 58, 277, 350, 379, 577
HspAI GCGC 1 cut(s) 311
Kzo9I GATC 3 cut(s) 247, 577, 581
LmnI GCTCC 4 cut(s) 40, 73, 160, 182
LpnPI CCDG 6 cut(s) 281, 333, 414, 477, 560, 565
Lsp1109I GCAGC 2 cut(s) 19, 239
LweI GCATC 1 cut(s) 95
MaeI CTAG 1 cut(s) 531
MaeII ACGT 3 cut(s) 108, 113, 211
MaeIII GTNAC 3 cut(s) 109, 479, 503
MalI GATC 3 cut(s) 249, 579, 583
MboI GATC 3 cut(s) 247, 577, 581
MboII GAAGA 1 cut(s) 134
MluCI AATT 5 cut(s) 6, 159, 351, 490, 602
MmeI TCCRAC 1 cut(s) 62
MnlI CCTC 3 cut(s) 34, 447, 494
MseI TTAA 1 cut(s) 188
MslI CAYNNNNRTG 2 cut(s) 278, 421
MspA1I CMGCKG 1 cut(s) 467
MspI CCGG 1 cut(s) 547
Mva1269I GAATGC 2 cut(s) 205, 221
MwoI GCNNNNNNNGC 4 cut(s) 41, 73, 419, 526
NcoI CCATGG 2 cut(s) 54, 346
NdeII GATC 3 cut(s) 247, 577, 581
NlaIII CATG 5 cut(s) 58, 277, 350, 379, 577
NmuCI GTSAC 3 cut(s) 109, 479, 503
PcsI WCGNNNNNNNCGW 1 cut(s) 105
PctI GAATGC 2 cut(s) 205, 221
PflMI CCANNNNNTGG 1 cut(s) 597
PkrI GCNGC 2 cut(s) 34, 254
PmaCI CACGTG 1 cut(s) 114
PmlI CACGTG 1 cut(s) 114
Ppu21I YACGTR 1 cut(s) 114
PspCI CACGTG 1 cut(s) 114
PspEI GGTNACC 1 cut(s) 479
PspPI GGNCC 1 cut(s) 549
PvuII CAGCTG 1 cut(s) 467
RsaI GTAC 2 cut(s) 443, 565
RsaNI GTAC 2 cut(s) 442, 564
RseI CAYNNNNRTG 2 cut(s) 278, 421
SaqAI TTAA 1 cut(s) 188
SatI GCNGC 2 cut(s) 33, 253
Sau3AI GATC 3 cut(s) 247, 577, 581
Sau96I GGNCC 1 cut(s) 549
SfaNI GCATC 1 cut(s) 95
SfcI CTRYAG 1 cut(s) 384
SinI GGWCC 1 cut(s) 549
SmiMI CAYNNNNRTG 2 cut(s) 278, 421
Sse9I AATT 5 cut(s) 6, 159, 351, 490, 602
SsiI CCGC 2 cut(s) 203, 244
SspMI CTAG 1 cut(s) 531
StyI CCWWGG 3 cut(s) 54, 69, 346
TaaI ACNGT 1 cut(s) 394
TaiI ACGT 3 cut(s) 111, 116, 214
TaqI TCGA 3 cut(s) 330, 486, 580
TasI AATT 5 cut(s) 6, 159, 351, 490, 602
TatI WGTACW 1 cut(s) 563
Tru1I TTAA 1 cut(s) 188
Tru9I TTAA 1 cut(s) 188
TscAI CASTG 1 cut(s) 397
TseFI GTSAC 3 cut(s) 109, 479, 503
TseI GCWGC 2 cut(s) 32, 252
Tsp45I GTSAC 3 cut(s) 109, 479, 503
TspDTI ATGAA 3 cut(s) 262, 364, 405
TspGWI ACGGA 1 cut(s) 429
TspRI CASTG 1 cut(s) 397
Van91I CCANNNNNTGG 1 cut(s) 597
VpaK11BI GGWCC 1 cut(s) 549
XapI RAATTY 1 cut(s) 351
XspI CTAG 1 cut(s) 531
ZraI GACGTC 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.