MD13G1007300.v1.1

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0011940
Physical Location & Seq
Forward (+)
468652 .. 470552
1901 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1007300.v1.1.491

Sequence Viewer

Length: 714 bp
ATGGCATTTTCAATCTCTGTATCCTCTGAAGCTGCTGCTCCAACGGTAATTCCAACCATGGCCGACTTGCCCAAGGAGCATTTTATAGAATCCATCAAGGATGACTATGACGTCACGTGTTGGGGTTGTGGATTACGCCTTGTTCTTCCATCAAATGCTCCAATTTTCAAGTGTGGTTGGTGTGGAGCTTTAACAAATCACAATGCGGGGAAACGTGAATGCAAATACTTTTGGTTGAGGCGCTTGCGGGATCGCTGCTTAGTCAGTATCCTGTTCATGTTTATGCTATTTGTGATGTGTGGTGGAGTGTGGGCGCTGTTCCCTGTTCTTTTCGATATCAGCTATTTCCATGGAATTTTTCACTCCATCATTACCTTCATGTTATCTGTAGCCACTGTTTATACAGTCAGTTCTGCTTCATTTGCGTGTGCTGGAACACCTCCATACAGAGTGTGGGGAAGCTATCCAGCTGTGGGGAAGGGTGACCTCGATAATTATACCTTCTGTCACCAATGCTCAAAGCCAAAGTCGCCTAGCACTCATCATTGCCGGTCCTGTGGAATGTGTATATTGGACATGGATCATCATTGCCCATTTGTGAGCGTCGTCATCTTCTTCCCTGTTCGAAAATATGTTGGTCGGTTGTTTTACGGAATATCTTTCTGTCTATTGAATGCTTTATCTTTTAATCACTTGACTTCTAGGTATCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHHC

Protein Analysis

238

Amino Acids

26.7

Weight (kDa)

8.61

Isoelectric Point (pI)

44.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 165 - 227 3.9e-12 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011940)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18620
fragaria_vesca FvH4_4g36750
malus_domestica MD13G1007300.v1.1 MD13G1007400.v1.1 MD16G1000700.v1.1
prunus_persica Prupe.1G345600_v2.0.a1 Prupe.1G345600_v2.0.a1
pyrus_communis pycom13g00620 pycom16g00470
rosa_chinensis RchiOBHm_Chr4g0446471
rosa_laevigata RLG00000005658 RLG00000025803
rosa_roxburghii Rroxscaffold_5G00386910
rosa_rugosa Rorug04G0371700
rosa_samantha Rh4AG433300 Rh4BG442500 Rh4CG459800 Rh4DG441200
rosa_wichuraiana Rw4G037020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 110
AatII GACGTC 1 cut(s) 114
AciI CCGC 2 cut(s) 206, 247
AclWI GGATC 2 cut(s) 258, 588
AcoI YGGCCR 1 cut(s) 60
AcsI RAATTY 1 cut(s) 354
AcuI CTGAAG 1 cut(s) 48
AcvI CACGTG 1 cut(s) 117
AcyI GRCGYC 1 cut(s) 111
AfiI CCNNNNNNNGG 1 cut(s) 473
AflIII ACRYGT 1 cut(s) 116
AgsI TTSAA 3 cut(s) 12, 169, 673
AluBI AGCT 5 cut(s) 32, 188, 342, 462, 470
AluI AGCT 5 cut(s) 32, 188, 342, 462, 470
AlwI GGATC 2 cut(s) 258, 588
AoxI GGCC 1 cut(s) 60
ApeKI GCWGC 3 cut(s) 32, 35, 255
ApoI RAATTY 1 cut(s) 354
ArsI GACNNNNNNTTYG 2 cut(s) 512, 544
AspLEI GCGC 2 cut(s) 243, 316
AspS9I GGNCC 1 cut(s) 552
AsuHPI GGTGA 2 cut(s) 494, 500
AsuII TTCGAA 1 cut(s) 625
AvaII GGWCC 1 cut(s) 552
BbrPI CACGTG 1 cut(s) 117
BbvI GCAGC 3 cut(s) 19, 22, 242
BccI CCATC 3 cut(s) 101, 157, 374
BciVI GTATCC 2 cut(s) 31, 278
BfaI CTAG 2 cut(s) 534, 702
BfmI CTRYAG 1 cut(s) 387
BfoI RGCGCY 2 cut(s) 244, 317
BfuI GTATCC 2 cut(s) 31, 278
BisI GCNGC 3 cut(s) 33, 36, 256
BlsI GCNGC 3 cut(s) 34, 37, 257
Bme18I GGWCC 1 cut(s) 552
BmgT120I GGNCC 1 cut(s) 552
Bpu14I TTCGAA 1 cut(s) 625
BsaAI YACGTR 1 cut(s) 117
BsaHI GRCGYC 1 cut(s) 111
BsaJI CCNNGG 3 cut(s) 57, 72, 349
Bsc4I CCNNNNNNNGG 1 cut(s) 473
Bse118I RCCGGY 1 cut(s) 549
Bse3DI GCAATG 2 cut(s) 544, 586
BseDI CCNNGG 3 cut(s) 57, 72, 349
BseGI GGATG 1 cut(s) 106
BseLI CCNNNNNNNGG 1 cut(s) 473
BseMI GCAATG 2 cut(s) 544, 586
BseXI GCAGC 3 cut(s) 19, 22, 242
BshFI GGCC 1 cut(s) 62
BsiSI CCGG 1 cut(s) 550
BslI CCNNNNNNNGG 1 cut(s) 473
BsmI GAATGC 2 cut(s) 224, 679
BsnI GGCC 1 cut(s) 62
Bsp119I TTCGAA 1 cut(s) 625
Bsp143I GATC 2 cut(s) 250, 580
Bsp19I CCATGG 2 cut(s) 57, 349
BspACI CCGC 2 cut(s) 206, 247
BspANI GGCC 1 cut(s) 62
BspPI GGATC 2 cut(s) 258, 588
BspT104I TTCGAA 1 cut(s) 625
BsrDI GCAATG 2 cut(s) 544, 586
BsrFI RCCGGY 1 cut(s) 549
BssAI RCCGGY 1 cut(s) 549
BssECI CCNNGG 3 cut(s) 57, 72, 349
BssMI GATC 2 cut(s) 250, 580
BssNI GRCGYC 1 cut(s) 111
BssT1I CCWWGG 3 cut(s) 57, 72, 349
Bst4CI ACNGT 3 cut(s) 46, 397, 406
BstACI GRCGYC 1 cut(s) 111
BstBAI YACGTR 1 cut(s) 117
BstBI TTCGAA 1 cut(s) 625
BstC8I GCNNGC 1 cut(s) 245
BstDEI CTNAG 1 cut(s) 259
BstDSI CCRYGG 2 cut(s) 57, 349
BstEII GGTNACC 1 cut(s) 482
BstF5I GGATG 1 cut(s) 106
BstH2I RGCGCY 2 cut(s) 244, 317
BstHHI GCGC 2 cut(s) 243, 316
BstKTI GATC 2 cut(s) 253, 583
BstMBI GATC 2 cut(s) 250, 580
BstMWI GCNNNNNNNGC 3 cut(s) 76, 422, 529
BstPI GGTNACC 1 cut(s) 482
BstSFI CTRYAG 1 cut(s) 387
BstV1I GCAGC 3 cut(s) 19, 22, 242
BsuI GTATCC 2 cut(s) 31, 278
BsuRI GGCC 1 cut(s) 62
BtgI CCRYGG 2 cut(s) 57, 349
BtsCI GGATG 1 cut(s) 106
BtsIMutI CAGTG 1 cut(s) 393
Cac8I GCNNGC 1 cut(s) 245
CfoI GCGC 2 cut(s) 243, 316
Cfr10I RCCGGY 1 cut(s) 549
Cfr13I GGNCC 1 cut(s) 552
CseI GACGC 1 cut(s) 592
CviAII CATG 5 cut(s) 58, 277, 350, 379, 577
CviJI RGCY 8 cut(s) 32, 62, 188, 342, 392, 462, 470, 523
CviKI_1 RGCY 8 cut(s) 32, 62, 188, 342, 392, 462, 470, 523
DdeI CTNAG 1 cut(s) 259
DpnI GATC 2 cut(s) 252, 582
DpnII GATC 2 cut(s) 250, 580
DrdI GACNNNNNNGTC 1 cut(s) 110
DseDI GACNNNNNNGTC 1 cut(s) 110
EaeI YGGCCR 1 cut(s) 60
Eco130I CCWWGG 3 cut(s) 57, 72, 349
Eco32I GATATC 1 cut(s) 337
Eco47I GGWCC 1 cut(s) 552
Eco57I CTGAAG 1 cut(s) 48
Eco72I CACGTG 1 cut(s) 117
Eco91I GGTNACC 1 cut(s) 482
EcoO65I GGTNACC 1 cut(s) 482
EcoRV GATATC 1 cut(s) 337
EcoT14I CCWWGG 3 cut(s) 57, 72, 349
ErhI CCWWGG 3 cut(s) 57, 72, 349
FaeI CATG 5 cut(s) 61, 280, 353, 382, 580
FatI CATG 5 cut(s) 57, 276, 349, 378, 576
FauI CCCGC 2 cut(s) 199, 240
Fnu4HI GCNGC 3 cut(s) 33, 36, 256
FokI GGATG 1 cut(s) 113
Fsp4HI GCNGC 3 cut(s) 33, 36, 256
FspBI CTAG 2 cut(s) 534, 702
GlaI GCGC 2 cut(s) 242, 315
GluI GCNGC 3 cut(s) 33, 36, 256
HaeII RGCGCY 2 cut(s) 244, 317
HaeIII GGCC 1 cut(s) 62
HapII CCGG 1 cut(s) 550
HgaI GACGC 1 cut(s) 592
HhaI GCGC 2 cut(s) 243, 316
Hin1I GRCGYC 1 cut(s) 111
Hin1II CATG 5 cut(s) 61, 280, 353, 382, 580
Hin6I GCGC 2 cut(s) 241, 314
HinP1I GCGC 2 cut(s) 241, 314
HinfI GANTC 1 cut(s) 89
HpaII CCGG 1 cut(s) 550
HphI GGTGA 2 cut(s) 494, 500
Hpy188I TCNGA 1 cut(s) 28
Hpy99I CGWCG 1 cut(s) 608
HpyAV CCTTC 3 cut(s) 385, 472, 511
HpyCH4III ACNGT 3 cut(s) 46, 397, 406
HpyCH4IV ACGT 3 cut(s) 111, 116, 214
HpyCH4V TGCA 1 cut(s) 222
HpyF10VI GCNNNNNNNGC 3 cut(s) 76, 422, 529
HpyF3I CTNAG 1 cut(s) 259
HpySE526I ACGT 3 cut(s) 111, 116, 214
Hsp92I GRCGYC 1 cut(s) 111
Hsp92II CATG 5 cut(s) 61, 280, 353, 382, 580
HspAI GCGC 2 cut(s) 241, 314
Kzo9I GATC 2 cut(s) 250, 580
LmnI GCTCC 4 cut(s) 43, 76, 163, 185
LpnPI CCDG 7 cut(s) 284, 336, 417, 480, 563, 568, 633
Lsp1109I GCAGC 3 cut(s) 19, 22, 242
MaeI CTAG 2 cut(s) 534, 702
MaeII ACGT 3 cut(s) 111, 116, 214
MaeIII GTNAC 3 cut(s) 112, 482, 506
MalI GATC 2 cut(s) 252, 582
MboI GATC 2 cut(s) 250, 580
MboII GAAGA 3 cut(s) 137, 604, 607
MluCI AATT 4 cut(s) 48, 162, 354, 493
MmeI TCCRAC 2 cut(s) 65, 77
MnlI CCTC 4 cut(s) 34, 231, 450, 497
MseI TTAA 2 cut(s) 191, 687
MslI CAYNNNNRTG 2 cut(s) 281, 424
MspA1I CMGCKG 1 cut(s) 470
MspI CCGG 1 cut(s) 550
Mva1269I GAATGC 2 cut(s) 224, 679
MwoI GCNNNNNNNGC 3 cut(s) 76, 422, 529
NcoI CCATGG 2 cut(s) 57, 349
NdeII GATC 2 cut(s) 250, 580
NlaIII CATG 5 cut(s) 61, 280, 353, 382, 580
NmuCI GTSAC 3 cut(s) 112, 482, 506
NspV TTCGAA 1 cut(s) 625
PctI GAATGC 2 cut(s) 224, 679
PfeI GAWTC 1 cut(s) 89
PkrI GCNGC 3 cut(s) 34, 37, 257
PmaCI CACGTG 1 cut(s) 117
PmlI CACGTG 1 cut(s) 117
Ppu21I YACGTR 1 cut(s) 117
PspCI CACGTG 1 cut(s) 117
PspEI GGTNACC 1 cut(s) 482
PspPI GGNCC 1 cut(s) 552
PvuII CAGCTG 1 cut(s) 470
RseI CAYNNNNRTG 2 cut(s) 281, 424
SaqAI TTAA 2 cut(s) 191, 687
SatI GCNGC 3 cut(s) 33, 36, 256
Sau3AI GATC 2 cut(s) 250, 580
Sau96I GGNCC 1 cut(s) 552
SfcI CTRYAG 1 cut(s) 387
SfuI TTCGAA 1 cut(s) 625
SinI GGWCC 1 cut(s) 552
SmiMI CAYNNNNRTG 2 cut(s) 281, 424
Sse9I AATT 4 cut(s) 48, 162, 354, 493
SsiI CCGC 2 cut(s) 206, 247
SspMI CTAG 2 cut(s) 534, 702
StyI CCWWGG 3 cut(s) 57, 72, 349
TaaI ACNGT 3 cut(s) 46, 397, 406
TaiI ACGT 3 cut(s) 114, 119, 217
TaqI TCGA 3 cut(s) 333, 489, 625
TasI AATT 4 cut(s) 48, 162, 354, 493
TfiI GAWTC 1 cut(s) 89
Tru1I TTAA 2 cut(s) 191, 687
Tru9I TTAA 2 cut(s) 191, 687
TscAI CASTG 1 cut(s) 400
TseFI GTSAC 3 cut(s) 112, 482, 506
TseI GCWGC 3 cut(s) 32, 35, 255
Tsp45I GTSAC 3 cut(s) 112, 482, 506
TspDTI ATGAA 3 cut(s) 265, 367, 408
TspGWI ACGGA 1 cut(s) 666
TspRI CASTG 1 cut(s) 400
VpaK11BI GGWCC 1 cut(s) 552
XapI RAATTY 1 cut(s) 354
XcmI CCANNNNNNNNNTGG 1 cut(s) 450
XspI CTAG 2 cut(s) 534, 702
ZraI GACGTC 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.