MD13G1007400.v1.1

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0011940
Physical Location & Seq
Forward (+)
470554 .. 471269
716 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1007400.v1.1.491

Sequence Viewer

Length: 507 bp
ATGCAGATTGGGAATTGTGTTGGTGCGTCTAACCACCGACACTTCATTGCCTTCCTCATATCAGTTGTCACCAGTATGTTCTATATTTCTATCATGGCTATGTATGTGGGTTATCATATCTGGCCATCCATAACATACGACCACTTACATGCCGTTGACAGTGATTCAGCTACAACAGCTATCCGTGGGATTATACATGGTTTTCTAAGATCCGCTGTCCTTTTACCCCCTAGAGGGCTTATTCTAATATATCTGTTTGTTTCAAGTGTTTCGTTGGAGATAGGGCTGGGCATACTTCTGTGGCAGCAGCTCAGTTTTATTTACGAGGGAAAGACGTATTTGAGTCATTTAAGTTCACGGGGAAGTGATGAAGTTGGAGAGAAGGATTGCCAAAACCTCGTGCGTTTCTTGGCATTCCCGTATCCCTTGTCAAGATATCTTTCCCTCTGCTCTCTCTCAAGAGTTTTGCCAAGTTTCCAAAAGAAGACGCATAAACACAAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHHC

Protein Analysis

169

Amino Acids

18.96

Weight (kDa)

9.35

Isoelectric Point (pI)

36.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 3 - 116 2.2e-11 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011940)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18620
fragaria_vesca FvH4_4g36750
malus_domestica MD13G1007300.v1.1 MD13G1007400.v1.1 MD16G1000700.v1.1
prunus_persica Prupe.1G345600_v2.0.a1 Prupe.1G345600_v2.0.a1
pyrus_communis pycom13g00620 pycom16g00470
rosa_chinensis RchiOBHm_Chr4g0446471
rosa_laevigata RLG00000005658 RLG00000025803
rosa_roxburghii Rroxscaffold_5G00386910
rosa_rugosa Rorug04G0371700
rosa_samantha Rh4AG433300 Rh4BG442500 Rh4CG459800 Rh4DG441200
rosa_wichuraiana Rw4G037020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 213
AclWI GGATC 1 cut(s) 204
AcoI YGGCCR 1 cut(s) 122
AfiI CCNNNNNNNGG 2 cut(s) 233, 234
AgsI TTSAA 1 cut(s) 264
AluBI AGCT 3 cut(s) 170, 179, 310
AluI AGCT 3 cut(s) 170, 179, 310
AlwI GGATC 1 cut(s) 204
AoxI GGCC 1 cut(s) 122
ApeKI GCWGC 2 cut(s) 304, 307
AsuHPI GGTGA 1 cut(s) 61
BalI TGGCCA 1 cut(s) 124
BauI CACGAG 1 cut(s) 398
BbsI GAAGAC 1 cut(s) 491
BbvI GCAGC 2 cut(s) 316, 319
BccI CCATC 1 cut(s) 133
BceAI ACGGC 1 cut(s) 137
BciVI GTATCC 1 cut(s) 432
BfaI CTAG 1 cut(s) 231
BfuI GTATCC 1 cut(s) 432
BisI GCNGC 2 cut(s) 305, 308
BlsI GCNGC 2 cut(s) 306, 309
BpiI GAAGAC 1 cut(s) 491
BpuEI CTTGAG 1 cut(s) 442
BsaJI CCNNGG 1 cut(s) 184
Bsc4I CCNNNNNNNGG 2 cut(s) 233, 234
Bse1I ACTGG 1 cut(s) 72
Bse3DI GCAATG 1 cut(s) 45
BseDI CCNNGG 1 cut(s) 184
BseGI GGATG 1 cut(s) 125
BseLI CCNNNNNNNGG 2 cut(s) 233, 234
BseMI GCAATG 1 cut(s) 45
BseMII CTCAG 1 cut(s) 325
BseNI ACTGG 1 cut(s) 72
BseXI GCAGC 2 cut(s) 316, 319
BseYI CCCAGC 1 cut(s) 286
BshFI GGCC 1 cut(s) 124
BslI CCNNNNNNNGG 2 cut(s) 233, 234
BsmI GAATGC 1 cut(s) 413
BsnI GGCC 1 cut(s) 124
Bsp143I GATC 1 cut(s) 209
BspACI CCGC 1 cut(s) 213
BspANI GGCC 1 cut(s) 124
BspCNI CTCAG 1 cut(s) 324
BspPI GGATC 1 cut(s) 204
BsrDI GCAATG 1 cut(s) 45
BsrI ACTGG 1 cut(s) 72
BssECI CCNNGG 1 cut(s) 184
BssMI GATC 1 cut(s) 209
BssSI CACGAG 1 cut(s) 398
Bst2BI CACGAG 1 cut(s) 398
Bst4CI ACNGT 1 cut(s) 161
BstDEI CTNAG 2 cut(s) 206, 311
BstDSI CCRYGG 1 cut(s) 184
BstF5I GGATG 1 cut(s) 125
BstKTI GATC 1 cut(s) 212
BstMBI GATC 1 cut(s) 209
BstMWI GCNNNNNNNGC 1 cut(s) 176
BstNSI RCATGY 1 cut(s) 152
BstV1I GCAGC 2 cut(s) 316, 319
BstV2I GAAGAC 1 cut(s) 491
BstX2I RGATCY 1 cut(s) 209
BstYI RGATCY 1 cut(s) 209
BsuI GTATCC 1 cut(s) 432
BsuRI GGCC 1 cut(s) 124
BtgI CCRYGG 1 cut(s) 184
BtsCI GGATG 1 cut(s) 125
BtsIMutI CAGTG 1 cut(s) 166
CseI GACGC 2 cut(s) 15, 496
CviAII CATG 3 cut(s) 94, 149, 197
CviJI RGCY 7 cut(s) 98, 124, 170, 179, 238, 286, 310
CviKI_1 RGCY 7 cut(s) 98, 124, 170, 179, 238, 286, 310
DdeI CTNAG 2 cut(s) 206, 311
DpnI GATC 1 cut(s) 211
DpnII GATC 1 cut(s) 209
EaeI YGGCCR 1 cut(s) 122
Eco32I GATATC 1 cut(s) 437
EcoRV GATATC 1 cut(s) 437
FaeI CATG 3 cut(s) 97, 152, 200
FatI CATG 3 cut(s) 93, 148, 196
Fnu4HI GCNGC 2 cut(s) 305, 308
FokI GGATG 1 cut(s) 112
Fsp4HI GCNGC 2 cut(s) 305, 308
FspBI CTAG 1 cut(s) 231
GluI GCNGC 2 cut(s) 305, 308
GsaI CCCAGC 1 cut(s) 290
HaeIII GGCC 1 cut(s) 124
HgaI GACGC 2 cut(s) 15, 496
Hin1II CATG 3 cut(s) 97, 152, 200
HincII GTYRAC 1 cut(s) 157
HindII GTYRAC 1 cut(s) 157
HinfI GANTC 2 cut(s) 164, 343
HphI GGTGA 1 cut(s) 61
Hpy166II GTNNAC 2 cut(s) 157, 356
Hpy188III TCNNGA 2 cut(s) 432, 459
Hpy8I GTNNAC 2 cut(s) 157, 356
HpyAV CCTTC 2 cut(s) 61, 376
HpyCH4III ACNGT 1 cut(s) 161
HpyCH4IV ACGT 1 cut(s) 335
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 176
HpyF3I CTNAG 2 cut(s) 206, 311
HpySE526I ACGT 1 cut(s) 335
Hsp92II CATG 3 cut(s) 97, 152, 200
Kzo9I GATC 1 cut(s) 209
LpnPI CCDG 3 cut(s) 85, 106, 272
Lsp1109I GCAGC 2 cut(s) 316, 319
MaeI CTAG 1 cut(s) 231
MaeII ACGT 1 cut(s) 335
MaeIII GTNAC 1 cut(s) 67
MalI GATC 1 cut(s) 211
MboI GATC 1 cut(s) 209
MboII GAAGA 1 cut(s) 496
MflI RGATCY 1 cut(s) 209
MlsI TGGCCA 1 cut(s) 124
MluCI AATT 1 cut(s) 13
MluNI TGGCCA 1 cut(s) 124
MlyI GAGTC 1 cut(s) 352
MmeI TCCRAC 2 cut(s) 255, 355
MnlI CCTC 5 cut(s) 65, 227, 319, 407, 455
Mox20I TGGCCA 1 cut(s) 124
MscI TGGCCA 1 cut(s) 124
MseI TTAA 1 cut(s) 350
MslI CAYNNNNRTG 3 cut(s) 74, 98, 147
Msp20I TGGCCA 1 cut(s) 124
MspA1I CMGCKG 1 cut(s) 215
Mva1269I GAATGC 1 cut(s) 413
MwoI GCNNNNNNNGC 1 cut(s) 176
NdeII GATC 1 cut(s) 209
NlaIII CATG 3 cut(s) 97, 152, 200
NmuCI GTSAC 1 cut(s) 67
NspI RCATGY 1 cut(s) 152
PctI GAATGC 1 cut(s) 413
PfeI GAWTC 1 cut(s) 164
PkrI GCNGC 2 cut(s) 306, 309
PleI GAGTC 1 cut(s) 351
PpsI GAGTC 1 cut(s) 351
PspFI CCCAGC 1 cut(s) 286
PsuI RGATCY 1 cut(s) 209
RseI CAYNNNNRTG 3 cut(s) 74, 98, 147
SaqAI TTAA 1 cut(s) 350
SatI GCNGC 2 cut(s) 305, 308
Sau3AI GATC 1 cut(s) 209
SchI GAGTC 1 cut(s) 352
SetI ASST 5 cut(s) 172, 181, 312, 338, 399
SmiMI CAYNNNNRTG 3 cut(s) 74, 98, 147
SmlI CTYRAG 1 cut(s) 457
SmoI CTYRAG 1 cut(s) 457
Sse9I AATT 1 cut(s) 13
SsiI CCGC 1 cut(s) 213
SspMI CTAG 1 cut(s) 231
TaaI ACNGT 1 cut(s) 161
TaiI ACGT 1 cut(s) 338
TasI AATT 1 cut(s) 13
TfiI GAWTC 1 cut(s) 164
Tru1I TTAA 1 cut(s) 350
Tru9I TTAA 1 cut(s) 350
TscAI CASTG 1 cut(s) 166
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 2 cut(s) 304, 307
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 2 cut(s) 34, 384
TspGWI ACGGA 1 cut(s) 173
TspRI CASTG 1 cut(s) 166
XceI RCATGY 1 cut(s) 152
XspI CTAG 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.