Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011098

Physical Location & Seq

Genomic Coordinates Reverse (-)

6790731 .. 6792988

Gene Structure 2258 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G19553.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1440 bp

ATGGGTGAAGAAGAGACAATCGTAAACGATGAAAACAGCTCTAAGCCAAAACCAAGTCCAAAGCTGACACTGTTGCCTCTGGTATTTCTCATCTTCTATGAAGTTTCTGGTGGACCTTTTGGTGTGGAGGATTCTGTGAAATCAGGTGGTGGTCCTCTCTTAGCCCTTTTAGGCTTCTTGATTTTCCCTCTGATTTGGAGTATACCCGAAGCTCTGGTCACAGCAGAACTCGCTACAAGCTTCCCTGAGAATGGTGGCTACGTGGTTTGGATCTCTTCAGCTTTTGGTCCATTTTGGGGATTCCAAGAAGGGTTTTGGAAATGGTTCAGTGGTGTTATGGACAATGCTTTATACCCTGTATTGTTTCTTGATTACTTGAAACATTCGTTCCCTGTTTTGGATCATGTAGCAGCTCGTGTTCCTGCTCTGTTGGTGATTACATTCTCACTGACGTATTTGAACTATAGAGGATTGCATATTGTTGGTTTTTCAGCTGTTGTGCTTGCGGTTTTCTCGCTCTGTCCTTTCGTTGTTATGGCTTTGCTTGCGGTTCCTAATATCAGGCCTAAGCGTTGGTTGTTTGTTGATACTCAGAAGATTAATTGGAGAGGCTACTTCAATACTATGTTTTGGAATCTGAACTATTGGGACAAAGCTAGTACTCTTGCAGGAGAAGTTGATAGACCCGGGAAGACGTTTCCAAAGGCTTTGTTTGGAGCGGTTTTGTTGGTCATGGGGTCATATTTGATTCCCCTCATGGCAGGGACTGGAGCTTTAAGCTCATCCACTTCTGGAGAATGGAGTGATGGGTATTTTGCTGAGGTTGGAATGCTTATTGGAGGTGTCTGGCTCAAGGGATGGATACAAGCTGCTGCTGCAATGTCTAATCTTGGATTGTTTGAAGCTGAAATGAGTAGTGATGCTTTTCAGCTTCTCGGTATGAGTGAGATTGGGATGCTCCCTGCATTTTTTGCTCAGAGGTCAAAGTATGGGACACCAACAATCAGTATTCTGTGCTCAGCTACAGGAGTCATATTCTTGTCATGGATGAGCTTTCAAGAGATCATAGAGTTTCTGAATTTCTTGTACGCATTAGGAATGCTTCTTGAGTTCGCAGCTTTTGTCAAACTAAGGATCAAGAAACCGGATCTTCACCGACCTTATAGAGTTCCCTTAAACACCTTTGGAGTTTCAATGCTGTGCCTGCCTCCTTCTTTGCTTGTCATTCTTGTGATGGTTTTGGCCGCCCCGAAGACATTTCTGATCAGCGGTGTGATCATAGTTCTTGGATTCTGCTTGTACCCATTCTTAACACTCGTTAAGGAGAAGCAGTGGGCGAGATTTATCCCGGAGGAAACAAGACCAGTTTCAGGAGTTTCATCAGAGTCACAGTTGGATGAAGAACATGGAGATGAGTCTGCTGCTAGCCTTCTCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015179 GO:0015203 GO:0015291 GO:0015297 GO:0015318 GO:0015711 GO:0015807 GO:0015846 GO:0015849 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1902047 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2

Protein Analysis

479

Amino Acids

52.84

Weight (kDa)

5.3

Isoelectric Point (pI)

39.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_permease_2	PF13520	23 - 423	6.3e-36	Amino acid permease
AA_permease	PF00324	48 - 414	8e-14	Amino acid permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19553
fragaria_vesca	FvH4_2g03970
malus_domestica	MD05G1096900.v1.1
prunus_persica	Prupe.8G141300_v2.0.a1 Prupe.8G141300_v2.0.a1 Prupe.8G141300_v2.0.a1
pyrus_communis	pycom05g09560
rosa_chinensis	RchiOBHm_Chr6g0253031 RchiOBHm_Chr6g0253191
rosa_laevigata	RLG00000015042
rosa_multiflora	Rmu_sc0002560.1_g000012 Rmu_sc0003855.1_g000010 Rmu_sc0003898.1_g000001
rosa_roxburghii	Rroxscaffold_7G00212180
rosa_rugosa	Rorug05G0542900
rosa_samantha	Rh6AG056900 Rh6BG051500 Rh6CG049300 Rh6DG045000
rosa_wichuraiana	Rw6G005200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	719
AccI	GTMKAC	1 cut(s)	202
AciI	CCGC	5 cut(s)	506, 548, 719, 1245, 1269
AclWI	GGATC	4 cut(s)	278, 408, 1142, 1155
AcoI	YGGCCR	1 cut(s)	1242
AcsI	RAATTY	1 cut(s)	1078
AcuI	CTGAAG	1 cut(s)	261
AfaI	GTAC	3 cut(s)	661, 1088, 1301
AfiI	CCNNNNNNNGG	4 cut(s)	251, 296, 397, 1370
AgsI	TTSAA	6 cut(s)	379, 460, 619, 902, 1058, 1194
Alw21I	GWGCWC	1 cut(s)	1019
Alw26I	GTCTC	1 cut(s)	8
AlwI	GGATC	4 cut(s)	278, 408, 1142, 1155
AlwNI	CAGNNNCTG	1 cut(s)	767
Ama87I	CYCGRG	1 cut(s)	686
AoxI	GGCC	2 cut(s)	563, 1242
ApeKI	GCWGC	6 cut(s)	410, 869, 872, 875, 1115, 1421
ApoI	RAATTY	1 cut(s)	1078
ArsI	GACNNNNNNTTYG	2 cut(s)	201, 233
AseI	ATTAAT	1 cut(s)	600
Asp700I	GAANNNNTTC	1 cut(s)	323
AspS9I	GGNCC	3 cut(s)	113, 152, 287
AsuC2I	CCSGG	3 cut(s)	687, 688, 1349
AsuHPI	GGTGA	3 cut(s)	17, 445, 1145
AsuNHI	GCTAGC	1 cut(s)	1424
AvaI	CYCGRG	1 cut(s)	686
AvaII	GGWCC	3 cut(s)	113, 152, 287
BauI	CACGAG	1 cut(s)	414
BbsI	GAAGAC	2 cut(s)	698, 1259
Bbv12I	GWGCWC	1 cut(s)	1019
BbvCI	CCTCAGC	1 cut(s)	819
BbvI	GCAGC	6 cut(s)	422, 856, 859, 862, 1127, 1408
BccI	CCATC	3 cut(s)	800, 852, 1228
BciVI	GTATCC	1 cut(s)	855
BclI	TGATCA	2 cut(s)	1263, 1275
BcnI	CCSGG	3 cut(s)	687, 688, 1349
BcoDI	GTCTC	1 cut(s)	8
BfaI	CTAG	2 cut(s)	657, 1425
BfmI	CTRYAG	2 cut(s)	463, 1023
BfuI	GTATCC	1 cut(s)	855
BisI	GCNGC	7 cut(s)	411, 870, 873, 876, 1116, 1245, 1422
BlpI	GCTNAGC	1 cut(s)	1018
BlsI	GCNGC	7 cut(s)	412, 871, 874, 877, 1117, 1246, 1423
BmcAI	AGTACT	1 cut(s)	661
Bme1390I	CCNGG	3 cut(s)	687, 688, 1349
Bme18I	GGWCC	3 cut(s)	113, 152, 287
BmeT110I	CYCGRG	1 cut(s)	686
BmgT120I	GGNCC	3 cut(s)	113, 152, 287
BmiI	GGNNCC	1 cut(s)	552
BmrFI	CCNGG	3 cut(s)	687, 688, 1349
BmsI	GCATC	2 cut(s)	910, 945
BmtI	GCTAGC	1 cut(s)	1428
BpiI	GAAGAC	2 cut(s)	698, 1259
BpmI	CTGGAG	2 cut(s)	789, 813
Bpu10I	CCTNAGC	2 cut(s)	567, 819
Bpu1102I	GCTNAGC	1 cut(s)	1018
BpuEI	CTTGAG	2 cut(s)	836, 1127
BpuMI	CCSGG	3 cut(s)	687, 688, 1349
BsaAI	YACGTR	1 cut(s)	262
BsaJI	CCNNGG	1 cut(s)	686
BsaWI	WCCGGW	1 cut(s)	1144
BsaXI	ACNNNNNCTCC	2 cut(s)	1316, 1346
Bsc4I	CCNNNNNNNGG	4 cut(s)	251, 296, 397, 1370
Bse1I	ACTGG	2 cut(s)	772, 1364
Bse3DI	GCAATG	1 cut(s)	885
BseDI	CCNNGG	1 cut(s)	686
BseGI	GGATG	5 cut(s)	782, 863, 960, 1053, 1402
BseLI	CCNNNNNNNGG	4 cut(s)	251, 296, 397, 1370
BseMI	GCAATG	1 cut(s)	885
BseMII	CTCAG	5 cut(s)	237, 605, 810, 989, 1032
BseNI	ACTGG	2 cut(s)	772, 1364
BseXI	GCAGC	6 cut(s)	422, 856, 859, 862, 1127, 1408
BshFI	GGCC	2 cut(s)	565, 1244
BsiHKAI	GWGCWC	1 cut(s)	1019
BsiHKCI	CYCGRG	1 cut(s)	686
BsiSI	CCGG	3 cut(s)	687, 1145, 1349
BslFI	GGGAC	3 cut(s)	662, 778, 1006
BslI	CCNNNNNNNGG	4 cut(s)	251, 296, 397, 1370
BsmAI	GTCTC	1 cut(s)	8
BsmFI	GGGAC	3 cut(s)	662, 778, 1006
BsmI	GAATGC	2 cut(s)	834, 1104
BsnI	GGCC	2 cut(s)	565, 1244
BsoBI	CYCGRG	1 cut(s)	686
Bsp1286I	GDGCHC	1 cut(s)	1019
Bsp143I	GATC	7 cut(s)	270, 400, 1062, 1134, 1147, 1263, 1275
Bsp1720I	GCTNAGC	1 cut(s)	1018
BspACI	CCGC	5 cut(s)	506, 548, 719, 1245, 1269
BspANI	GGCC	2 cut(s)	565, 1244
BspCNI	CTCAG	5 cut(s)	238, 604, 811, 988, 1031
BspLI	GGNNCC	1 cut(s)	552
BspOI	GCTAGC	1 cut(s)	1428
BspPI	GGATC	4 cut(s)	278, 408, 1142, 1155
BsrBI	CCGCTC	1 cut(s)	719
BsrDI	GCAATG	1 cut(s)	885
BsrI	ACTGG	2 cut(s)	772, 1364
BssECI	CCNNGG	1 cut(s)	686
BssMI	GATC	7 cut(s)	270, 400, 1062, 1134, 1147, 1263, 1275
BssNAI	GTATAC	1 cut(s)	203
BssSI	CACGAG	1 cut(s)	414
Bst1107I	GTATAC	1 cut(s)	203
Bst2BI	CACGAG	1 cut(s)	414
Bst4CI	ACNGT	2 cut(s)	72, 1392
Bst6I	CTCTTC	2 cut(s)	6, 280
BstAPI	GCANNNNNTGC	1 cut(s)	971
BstBAI	YACGTR	1 cut(s)	262
BstC8I	GCNNGC	4 cut(s)	504, 546, 1205, 1426
BstDEI	CTNAG	9 cut(s)	42, 160, 246, 567, 591, 819, 975, 1018, 1130
BstF5I	GGATG	5 cut(s)	782, 863, 960, 1053, 1402
BstKTI	GATC	7 cut(s)	273, 403, 1065, 1137, 1150, 1266, 1278
BstMAI	GTCTC	1 cut(s)	8
BstMBI	GATC	7 cut(s)	270, 400, 1062, 1134, 1147, 1263, 1275
BstMWI	GCNNNNNNNGC	5 cut(s)	230, 545, 875, 971, 1204
BstSCI	CCNGG	3 cut(s)	685, 686, 1347
BstSFI	CTRYAG	2 cut(s)	463, 1023
BstV1I	GCAGC	6 cut(s)	422, 856, 859, 862, 1127, 1408
BstV2I	GAAGAC	2 cut(s)	698, 1259
BstX2I	RGATCY	2 cut(s)	270, 1147
BstYI	RGATCY	2 cut(s)	270, 1147
BstZ17I	GTATAC	1 cut(s)	203
BsuI	GTATCC	1 cut(s)	855
BsuRI	GGCC	2 cut(s)	565, 1244
BtsCI	GGATG	5 cut(s)	782, 863, 960, 1053, 1402
BtsI	GCAGTG	1 cut(s)	1337
BtsIMutI	CAGTG	4 cut(s)	68, 334, 446, 1337
Cac8I	GCNNGC	4 cut(s)	504, 546, 1205, 1426
CaiI	CAGNNNCTG	1 cut(s)	767
Cfr13I	GGNCC	3 cut(s)	113, 152, 287
Cfr9I	CCCGGG	1 cut(s)	686
Csp6I	GTAC	3 cut(s)	660, 1087, 1300
CviAII	CATG	6 cut(s)	404, 733, 757, 1044, 1406, 1437
CviQI	GTAC	3 cut(s)	660, 1087, 1300
DdeI	CTNAG	9 cut(s)	42, 160, 246, 567, 591, 819, 975, 1018, 1130
DpnI	GATC	7 cut(s)	272, 402, 1064, 1136, 1149, 1265, 1277
DpnII	GATC	7 cut(s)	270, 400, 1062, 1134, 1147, 1263, 1275
EaeI	YGGCCR	1 cut(s)	1242
Eam1104I	CTCTTC	2 cut(s)	6, 280
EarI	CTCTTC	2 cut(s)	6, 280
Eco147I	AGGCCT	1 cut(s)	565
Eco47I	GGWCC	3 cut(s)	113, 152, 287
Eco57I	CTGAAG	1 cut(s)	261
Eco88I	CYCGRG	1 cut(s)	686
FaeI	CATG	6 cut(s)	407, 736, 760, 1047, 1409, 1440
FaqI	GGGAC	3 cut(s)	662, 778, 1006
FatI	CATG	6 cut(s)	403, 732, 756, 1043, 1405, 1436
FbaI	TGATCA	2 cut(s)	1263, 1275
FblI	GTMKAC	1 cut(s)	202
Fnu4HI	GCNGC	7 cut(s)	411, 870, 873, 876, 1116, 1245, 1422
FokI	GGATG	5 cut(s)	769, 870, 967, 1060, 1409
Fsp4HI	GCNGC	7 cut(s)	411, 870, 873, 876, 1116, 1245, 1422
FspBI	CTAG	2 cut(s)	657, 1425
GluI	GCNGC	7 cut(s)	411, 870, 873, 876, 1116, 1245, 1422
GsuI	CTGGAG	2 cut(s)	789, 813
HaeIII	GGCC	2 cut(s)	565, 1244
HapII	CCGG	3 cut(s)	687, 1145, 1349
Hin1II	CATG	6 cut(s)	407, 736, 760, 1047, 1409, 1440
HindIII	AAGCTT	1 cut(s)	238
HinfI	GANTC	8 cut(s)	131, 300, 634, 748, 1029, 1290, 1385, 1415
HpaII	CCGG	3 cut(s)	687, 1145, 1349
HphI	GGTGA	3 cut(s)	17, 445, 1145
Hpy166II	GTNNAC	3 cut(s)	25, 113, 203
Hpy188I	TCNGA	7 cut(s)	192, 594, 639, 978, 1077, 1263, 1384
Hpy188III	TCNNGA	7 cut(s)	178, 368, 792, 1058, 1106, 1138, 1371
Hpy8I	GTNNAC	3 cut(s)	25, 113, 203
HpyAV	CCTTC	3 cut(s)	302, 1221, 1439
HpyCH4III	ACNGT	2 cut(s)	72, 1392
HpyCH4IV	ACGT	3 cut(s)	261, 452, 695
HpyCH4V	TGCA	4 cut(s)	475, 668, 878, 965
HpyF10VI	GCNNNNNNNGC	5 cut(s)	230, 545, 875, 971, 1204
HpyF3I	CTNAG	9 cut(s)	42, 160, 246, 567, 591, 819, 975, 1018, 1130
HpySE526I	ACGT	3 cut(s)	261, 452, 695
Hsp92II	CATG	6 cut(s)	407, 736, 760, 1047, 1409, 1440
Ksp22I	TGATCA	2 cut(s)	1263, 1275
Kzo9I	GATC	7 cut(s)	270, 400, 1062, 1134, 1147, 1263, 1275
LmnI	GCTCC	3 cut(s)	716, 770, 963
Lsp1109I	GCAGC	6 cut(s)	422, 856, 859, 862, 1127, 1408
LweI	GCATC	2 cut(s)	910, 945
MaeI	CTAG	2 cut(s)	657, 1425
MaeII	ACGT	3 cut(s)	261, 452, 695
MaeIII	GTNAC	2 cut(s)	217, 1386
MalI	GATC	7 cut(s)	272, 402, 1064, 1136, 1149, 1265, 1277
MbiI	CCGCTC	1 cut(s)	719
MboI	GATC	7 cut(s)	270, 400, 1062, 1134, 1147, 1263, 1275
MboII	GAAGA	9 cut(s)	20, 23, 85, 267, 607, 703, 1142, 1264, 1412
MflI	RGATCY	2 cut(s)	270, 1147
MhlI	GDGCHC	1 cut(s)	1019
MluCI	AATT	2 cut(s)	601, 1078
MlyI	GAGTC	3 cut(s)	1038, 1394, 1424
MmeI	TCCRAC	2 cut(s)	805, 1374
MroXI	GAANNNNTTC	1 cut(s)	323
MseI	TTAA	5 cut(s)	600, 776, 1175, 1310, 1320
MslI	CAYNNNNRTG	2 cut(s)	1229, 1410
MspA1I	CMGCKG	2 cut(s)	494, 1269
MspI	CCGG	3 cut(s)	687, 1145, 1349
MspR9I	CCNGG	3 cut(s)	687, 688, 1349
Mva1269I	GAATGC	2 cut(s)	834, 1104
MwoI	GCNNNNNNNGC	5 cut(s)	230, 545, 875, 971, 1204
NciI	CCSGG	3 cut(s)	687, 688, 1349
NdeII	GATC	7 cut(s)	270, 400, 1062, 1134, 1147, 1263, 1275
NheI	GCTAGC	1 cut(s)	1424
NlaIII	CATG	6 cut(s)	407, 736, 760, 1047, 1409, 1440
NlaIV	GGNNCC	1 cut(s)	552
NmuCI	GTSAC	2 cut(s)	217, 1386
PceI	AGGCCT	1 cut(s)	565
PctI	GAATGC	2 cut(s)	834, 1104
PdmI	GAANNNNTTC	1 cut(s)	323
PfeI	GAWTC	5 cut(s)	131, 300, 634, 748, 1290
PfoI	TCCNGGA	1 cut(s)	1347
PkrI	GCNGC	7 cut(s)	412, 871, 874, 877, 1117, 1246, 1423
PleI	GAGTC	3 cut(s)	1037, 1393, 1423
PpsI	GAGTC	3 cut(s)	1037, 1393, 1423
Ppu21I	YACGTR	1 cut(s)	262
PshBI	ATTAAT	1 cut(s)	600
PspN4I	GGNNCC	1 cut(s)	552
PspPI	GGNCC	3 cut(s)	113, 152, 287
PstNI	CAGNNNCTG	1 cut(s)	767
PsuI	RGATCY	2 cut(s)	270, 1147
PvuII	CAGCTG	1 cut(s)	494
RsaI	GTAC	3 cut(s)	661, 1088, 1301
RsaNI	GTAC	3 cut(s)	660, 1087, 1300
RseI	CAYNNNNRTG	2 cut(s)	1229, 1410
SaqAI	TTAA	5 cut(s)	600, 776, 1175, 1310, 1320
SatI	GCNGC	7 cut(s)	411, 870, 873, 876, 1116, 1245, 1422
Sau3AI	GATC	7 cut(s)	270, 400, 1062, 1134, 1147, 1263, 1275
Sau96I	GGNCC	3 cut(s)	113, 152, 287
ScaI	AGTACT	1 cut(s)	661
SchI	GAGTC	3 cut(s)	1038, 1394, 1424
ScrFI	CCNGG	3 cut(s)	687, 688, 1349
SduI	GDGCHC	1 cut(s)	1019
SfaNI	GCATC	2 cut(s)	910, 945
SfcI	CTRYAG	2 cut(s)	463, 1023
SinI	GGWCC	3 cut(s)	113, 152, 287
SmaI	CCCGGG	1 cut(s)	688
SmiMI	CAYNNNNRTG	2 cut(s)	1229, 1410
SmlI	CTYRAG	2 cut(s)	851, 1106
SmoI	CTYRAG	2 cut(s)	851, 1106
Sse9I	AATT	2 cut(s)	601, 1078
SseBI	AGGCCT	1 cut(s)	565
SsiI	CCGC	5 cut(s)	506, 548, 719, 1245, 1269
SspMI	CTAG	2 cut(s)	657, 1425
StuI	AGGCCT	1 cut(s)	565
StyD4I	CCNGG	3 cut(s)	685, 686, 1347
TaaI	ACNGT	2 cut(s)	72, 1392
TaiI	ACGT	3 cut(s)	264, 455, 698
TasI	AATT	2 cut(s)	601, 1078
TatI	WGTACW	1 cut(s)	659
TauI	GCSGC	1 cut(s)	1247
TfiI	GAWTC	5 cut(s)	131, 300, 634, 748, 1290
Tru1I	TTAA	5 cut(s)	600, 776, 1175, 1310, 1320
Tru9I	TTAA	5 cut(s)	600, 776, 1175, 1310, 1320
TscAI	CASTG	4 cut(s)	75, 334, 453, 1337
TseFI	GTSAC	2 cut(s)	217, 1386
TseI	GCWGC	6 cut(s)	410, 869, 872, 875, 1115, 1421
Tsp45I	GTSAC	2 cut(s)	217, 1386
TspDTI	ATGAA	4 cut(s)	45, 114, 1368, 1413
TspMI	CCCGGG	1 cut(s)	686
TspRI	CASTG	4 cut(s)	75, 334, 453, 1337
VpaK11BI	GGWCC	3 cut(s)	113, 152, 287
VspI	ATTAAT	1 cut(s)	600
XapI	RAATTY	1 cut(s)	1078
XmaI	CCCGGG	1 cut(s)	686
XmiI	GTMKAC	1 cut(s)	202
XmnI	GAANNNNTTC	1 cut(s)	323
XspI	CTAG	2 cut(s)	657, 1425
ZrmI	AGTACT	1 cut(s)	661

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.