Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0011098

Physical Location & Seq

Genomic Coordinates Forward (+)

60975423 .. 60978463

Gene Structure 3041 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015042

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1653 bp

ATGGGTGAAGAGGGAATGGTCAGTGATGTCAAGGACACAGCTGCTGCCAAACCAAACCCAAAGTTGACACTTTTGCCTCTTATAGCTTTAATTTTCTATGAGGTTTCTGGGGGTCCTTTTGGAGTTGAGGATTCAGTCAGGGCTGGAGGAGGCCCTCTTTTGTCATTGCTTGGTTTCTTAGTGTTTCCTTTGTTTTGGAGCATTCCAGAAGCTTTGGTGACAGCTGAGCTTGCCACAAGCTTCCCTGAAAATGGTGGATATGTGCTTTGGATATCAGCGGCTTTCGGGCCATTTTGGGGTTTCCAAGAGGGGTTTTGGAAATGGTTTAGCGGTGTTATGGACAATGCTTTATACCCAGTTTTGTTCCTGGATTACTTGAAGCATACATTTCCCATATTTAACCAGATGGTTGCTAGAATTCCAGCTCTTTTGGGAATAACATTCTCATTGACTTACTTGAACTACCGCGGACTGCATATTGTTGGGTTCTCTGCTGTTTCACTTGCTGTTTTCTCACTTTGCCCATTTGTGGTGATGGCTGTTCTTTCGATTCCTAGAATTAGGGTCAAGCAGTGGCTAGTTGTGGACTTTAAGAAGGTGGAGTGGAGGGGATATTTTAATAGTATGTTTTGGAATCTGAATTACTGGGATAAGGCAAGTACCCTTGCAGGGGAGGTTGAAAATCCAAGCAAGACATTTCCAAAGGCGCTTCTTGGGGCTGTAGTTGTGGTGGTTTGTTCATATTTGATTCCACTTCTTGCTGGTACGGGAGCCTTAAACTCTCCATCTAGCGAGTGGACTGATGGGTACTTTGCAGAAGTTGGGATGTTAATAGGTGGCGTTTGGCTAAAGTGGTGGATTCAAGCAGCTTCTGCAATGTCTAACTTGGGGTTGTTCGAAGCAGAAATGAGCAGTGATGCCTTTCAACTTCTTGGGATGAGCGAGATGGGAATGCTTCCGGCTATATTTGCTTCAAGGTCCAAGTATGGAACACCTACCATAAGCATTTTGTGCTCTGCCACCGGAGTCATCTTCTTGTCGTGGATGAGTTTTCAGGAAATCTTGGAGTTTTTGAATTTCTTATATGCTATAGGAATGCTTCTTGAGTTTGCTGCTTTTATAAAATTGAGAATAAAGAAGCCAGACCTTCACAGACCTTACCGAGTTCCATTCCAGACATTTGGGGCAATAATGCTTTGCCTGCCTCCCGCATTGTTGCTTATTCTCGTAATGTGCTTGGCTTCTCTGAGGACATTCTTAGTAAGTGGTGTGGTGATTATAGTGGGTCTTTTGTTATACCCTCTTTTAGTTCATGCAAAGGACCATGGATGGGCACAGTTCGATGCAGAACTACCCACTGAGGCTCCCAAGAATTGTTCGGATGGCCACTCCATGGTTTCACAGTTGCATCAAGAAGTTCAAGATGAATCTTCTGTTAGCCTTCTCTCAGACTTGCCATCTGTTAATGCAGAACAAGAATCTTCGACCGTAAGGCCAGAAGAAGCCTTCAAATTAGAGAAGTACTTATCTCAGCTTACAGAAATAGCTTCCAAACAAAACAGGCAAATAATTCAGACAGTCTCCACTACACTTCTTCAAGCCATTGACTTGAACCTAAATCCACTCAGGTATTTTGGAGAATTCAATGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015179 GO:0015203 GO:0015291 GO:0015297 GO:0015318 GO:0015711 GO:0015807 GO:0015846 GO:0015849 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1902047 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2

Protein Analysis

551

Amino Acids

60.93

Weight (kDa)

5.25

Isoelectric Point (pI)

34.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_permease_2	PF13520	23 - 404	5.3e-30	Amino acid permease
AA_permease	PF00324	48 - 416	3.4e-13	Amino acid permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19553
fragaria_vesca	FvH4_2g03970
malus_domestica	MD05G1096900.v1.1
prunus_persica	Prupe.8G141300_v2.0.a1 Prupe.8G141300_v2.0.a1 Prupe.8G141300_v2.0.a1
pyrus_communis	pycom05g09560
rosa_chinensis	RchiOBHm_Chr6g0253031 RchiOBHm_Chr6g0253191
rosa_laevigata	RLG00000015042
rosa_multiflora	Rmu_sc0002560.1_g000012 Rmu_sc0003855.1_g000010 Rmu_sc0003898.1_g000001
rosa_roxburghii	Rroxscaffold_7G00212180
rosa_rugosa	Rorug05G0542900
rosa_samantha	Rh6AG056900 Rh6BG051500 Rh6CG049300 Rh6DG045000
rosa_wichuraiana	Rw6G005200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1121
AccB7I	CCANNNNNTGG	1 cut(s)	1393
AccII	CGCG	1 cut(s)	468
AciI	CCGC	5 cut(s)	278, 330, 466, 468, 1209
AcoI	YGGCCR	1 cut(s)	1384
AcsI	RAATTY	3 cut(s)	417, 1075, 1640
AfaI	GTAC	4 cut(s)	661, 766, 809, 1523
AfiI	CCNNNNNNNGG	7 cut(s)	251, 296, 529, 669, 670, 1330, 1393
AjnI	CCWGG	1 cut(s)	366
Alw21I	GWGCWC	1 cut(s)	1016
Alw26I	GTCTC	1 cut(s)	1585
AlwNI	CAGNNNCTG	2 cut(s)	44, 872
AoxI	GGCC	4 cut(s)	151, 287, 1384, 1493
ApeKI	GCWGC	4 cut(s)	41, 44, 866, 1112
ApoI	RAATTY	3 cut(s)	417, 1075, 1640
AspLEI	GCGC	1 cut(s)	709
AspS9I	GGNCC	5 cut(s)	113, 152, 287, 978, 1321
AsuHPI	GGTGA	4 cut(s)	17, 229, 544, 1285
AsuII	TTCGAA	1 cut(s)	897
AvaII	GGWCC	3 cut(s)	113, 978, 1321
BaeGI	GKGCMC	1 cut(s)	1336
BalI	TGGCCA	1 cut(s)	1386
Bbv12I	GWGCWC	1 cut(s)	1016
BbvI	GCAGC	4 cut(s)	28, 31, 878, 1099
BccI	CCATC	8 cut(s)	400, 529, 793, 797, 940, 1323, 1376, 1465
BciT130I	CCWGG	1 cut(s)	368
BcoDI	GTCTC	1 cut(s)	1585
BfaI	CTAG	4 cut(s)	414, 555, 578, 789
BfmI	CTRYAG	2 cut(s)	720, 1089
BfoI	RGCGCY	1 cut(s)	710
BisI	GCNGC	5 cut(s)	42, 45, 279, 867, 1113
BlpI	GCTNAGC	1 cut(s)	225
BlsI	GCNGC	5 cut(s)	43, 46, 280, 868, 1114
BmcAI	AGTACT	1 cut(s)	1523
Bme1390I	CCNGG	1 cut(s)	368
Bme18I	GGWCC	3 cut(s)	113, 978, 1321
BmgT120I	GGNCC	5 cut(s)	113, 152, 287, 978, 1321
BmiI	GGNNCC	3 cut(s)	114, 772, 1365
BmrFI	CCNGG	1 cut(s)	368
BmrI	ACTGGG	2 cut(s)	350, 655
BmsI	GCATC	3 cut(s)	907, 1333, 1417
BmuI	ACTGGG	2 cut(s)	350, 655
BpmI	CTGGAG	1 cut(s)	165
Bpu1102I	GCTNAGC	1 cut(s)	225
Bpu14I	TTCGAA	1 cut(s)	897
BpuEI	CTTGAG	1 cut(s)	1124
BsaJI	CCNNGG	3 cut(s)	466, 1324, 1392
BsaWI	WCCGGW	1 cut(s)	1022
BsaXI	ACNNNNNCTCC	2 cut(s)	1348, 1378
Bsc4I	CCNNNNNNNGG	7 cut(s)	251, 296, 529, 669, 670, 1330, 1393
Bse1I	ACTGG	2 cut(s)	356, 650
Bse3DI	GCAATG	2 cut(s)	164, 882
BseBI	CCWGG	1 cut(s)	368
BseDI	CCNNGG	3 cut(s)	466, 1324, 1392
BseGI	GGATG	5 cut(s)	831, 942, 1050, 1334, 1387
BseLI	CCNNNNNNNGG	7 cut(s)	251, 296, 529, 669, 670, 1330, 1393
BseMI	GCAATG	2 cut(s)	164, 882
BseMII	CTCAG	6 cut(s)	216, 1238, 1350, 1461, 1544, 1639
BseNI	ACTGG	2 cut(s)	356, 650
BseRI	GAGGAG	1 cut(s)	162
BseSI	GKGCMC	1 cut(s)	1336
BseXI	GCAGC	4 cut(s)	28, 31, 878, 1099
Bsh1236I	CGCG	1 cut(s)	468
Bsh1285I	CGRYCG	1 cut(s)	1488
BshFI	GGCC	4 cut(s)	153, 289, 1386, 1495
BsiEI	CGRYCG	1 cut(s)	1488
BsiHKAI	GWGCWC	1 cut(s)	1016
BsiSI	CCGG	2 cut(s)	959, 1023
BslI	CCNNNNNNNGG	7 cut(s)	251, 296, 529, 669, 670, 1330, 1393
BsmAI	GTCTC	1 cut(s)	1585
BsmI	GAATGC	3 cut(s)	201, 957, 1101
BsnI	GGCC	4 cut(s)	153, 289, 1386, 1495
Bsp119I	TTCGAA	1 cut(s)	897
Bsp1286I	GDGCHC	2 cut(s)	1016, 1336
Bsp1720I	GCTNAGC	1 cut(s)	225
Bsp19I	CCATGG	2 cut(s)	1324, 1392
BspACI	CCGC	5 cut(s)	278, 330, 466, 468, 1209
BspANI	GGCC	4 cut(s)	153, 289, 1386, 1495
BspCNI	CTCAG	6 cut(s)	217, 1239, 1351, 1460, 1543, 1638
BspFNI	CGCG	1 cut(s)	468
BspLI	GGNNCC	3 cut(s)	114, 772, 1365
BspT104I	TTCGAA	1 cut(s)	897
BsrDI	GCAATG	2 cut(s)	164, 882
BsrI	ACTGG	2 cut(s)	356, 650
BssECI	CCNNGG	3 cut(s)	466, 1324, 1392
BssT1I	CCWWGG	2 cut(s)	1324, 1392
Bst2UI	CCWGG	1 cut(s)	368
Bst4CI	ACNGT	4 cut(s)	1338, 1404, 1489, 1579
Bst6I	CTCTTC	1 cut(s)	3
BstAPI	GCANNNNNTGC	2 cut(s)	872, 1011
BstBI	TTCGAA	1 cut(s)	897
BstC8I	GCNNGC	2 cut(s)	231, 1202
BstDEI	CTNAG	8 cut(s)	178, 225, 1247, 1258, 1359, 1447, 1530, 1625
BstDSI	CCRYGG	3 cut(s)	466, 1324, 1392
BstF5I	GGATG	5 cut(s)	831, 942, 1050, 1334, 1387
BstFNI	CGCG	1 cut(s)	468
BstH2I	RGCGCY	1 cut(s)	710
BstHHI	GCGC	1 cut(s)	709
BstMAI	GTCTC	1 cut(s)	1585
BstMCI	CGRYCG	1 cut(s)	1488
BstMWI	GCNNNNNNNGC	5 cut(s)	230, 872, 968, 1011, 1201
BstNI	CCWGG	1 cut(s)	368
BstSCI	CCNGG	1 cut(s)	366
BstSFI	CTRYAG	2 cut(s)	720, 1089
BstSLI	GKGCMC	1 cut(s)	1336
BstUI	CGCG	1 cut(s)	468
BstV1I	GCAGC	4 cut(s)	28, 31, 878, 1099
BstXI	CCANNNNNNTGG	1 cut(s)	1181
BsuRI	GGCC	4 cut(s)	153, 289, 1386, 1495
BtgI	CCRYGG	3 cut(s)	466, 1324, 1392
BtsCI	GGATG	5 cut(s)	831, 942, 1050, 1334, 1387
BtsI	GCAGTG	2 cut(s)	578, 919
BtsIMutI	CAGTG	4 cut(s)	28, 578, 919, 1356
Cac8I	GCNNGC	2 cut(s)	231, 1202
CaiI	CAGNNNCTG	2 cut(s)	44, 872
CfoI	GCGC	1 cut(s)	709
Cfr13I	GGNCC	5 cut(s)	113, 152, 287, 978, 1321
Cfr42I	CCGCGG	1 cut(s)	469
Csp6I	GTAC	4 cut(s)	660, 765, 808, 1522
CviAII	CATG	3 cut(s)	1313, 1325, 1393
CviQI	GTAC	4 cut(s)	660, 765, 808, 1522
DdeI	CTNAG	8 cut(s)	178, 225, 1247, 1258, 1359, 1447, 1530, 1625
EaeI	YGGCCR	1 cut(s)	1384
Eam1104I	CTCTTC	1 cut(s)	3
EarI	CTCTTC	1 cut(s)	3
Eco130I	CCWWGG	2 cut(s)	1324, 1392
Eco32I	GATATC	1 cut(s)	273
Eco47I	GGWCC	3 cut(s)	113, 978, 1321
EcoO109I	RGGNCCY	2 cut(s)	113, 152
EcoRI	GAATTC	2 cut(s)	417, 1640
EcoRII	CCWGG	1 cut(s)	366
EcoRV	GATATC	1 cut(s)	273
EcoT14I	CCWWGG	2 cut(s)	1324, 1392
ErhI	CCWWGG	2 cut(s)	1324, 1392
FaeI	CATG	3 cut(s)	1316, 1328, 1396
FatI	CATG	3 cut(s)	1312, 1324, 1392
FauI	CCCGC	1 cut(s)	1216
Fnu4HI	GCNGC	5 cut(s)	42, 45, 279, 867, 1113
FokI	GGATG	5 cut(s)	838, 949, 1057, 1341, 1394
Fsp4HI	GCNGC	5 cut(s)	42, 45, 279, 867, 1113
FspBI	CTAG	4 cut(s)	414, 555, 578, 789
GlaI	GCGC	1 cut(s)	708
GluI	GCNGC	5 cut(s)	42, 45, 279, 867, 1113
GsuI	CTGGAG	1 cut(s)	165
HaeII	RGCGCY	1 cut(s)	710
HaeIII	GGCC	4 cut(s)	153, 289, 1386, 1495
HapII	CCGG	2 cut(s)	959, 1023
HhaI	GCGC	1 cut(s)	709
Hin1II	CATG	3 cut(s)	1316, 1328, 1396
Hin6I	GCGC	1 cut(s)	707
HinP1I	GCGC	1 cut(s)	707
HincII	GTYRAC	1 cut(s)	66
HindII	GTYRAC	1 cut(s)	66
HindIII	AAGCTT	2 cut(s)	210, 238
HinfI	GANTC	8 cut(s)	131, 550, 634, 748, 859, 1026, 1427, 1478
HpaII	CCGG	2 cut(s)	959, 1023
HphI	GGTGA	4 cut(s)	17, 229, 544, 1285
Hpy166II	GTNNAC	3 cut(s)	66, 586, 798
Hpy188I	TCNGA	5 cut(s)	639, 1248, 1381, 1450, 1575
Hpy188III	TCNNGA	6 cut(s)	206, 1055, 1103, 1174, 1412, 1421
Hpy8I	GTNNAC	3 cut(s)	66, 586, 798
HpyAV	CCTTC	4 cut(s)	589, 1157, 1451, 1516
HpyCH4III	ACNGT	4 cut(s)	1338, 1404, 1489, 1579
HpyCH4V	TGCA	8 cut(s)	475, 668, 815, 875, 1316, 1346, 1408, 1469
HpyF10VI	GCNNNNNNNGC	5 cut(s)	230, 872, 968, 1011, 1201
HpyF3I	CTNAG	8 cut(s)	178, 225, 1247, 1258, 1359, 1447, 1530, 1625
Hsp92II	CATG	3 cut(s)	1316, 1328, 1396
HspAI	GCGC	1 cut(s)	707
KspI	CCGCGG	1 cut(s)	469
LmnI	GCTCC	3 cut(s)	198, 770, 1369
Lsp1109I	GCAGC	4 cut(s)	28, 31, 878, 1099
LweI	GCATC	3 cut(s)	907, 1333, 1417
MaeI	CTAG	4 cut(s)	414, 555, 578, 789
MaeIII	GTNAC	1 cut(s)	217
MboII	GAAGA	6 cut(s)	20, 1024, 1422, 1473, 1511, 1586
MhlI	GDGCHC	2 cut(s)	1016, 1336
MlsI	TGGCCA	1 cut(s)	1386
MluNI	TGGCCA	1 cut(s)	1386
MlyI	GAGTC	1 cut(s)	1035
Mox20I	TGGCCA	1 cut(s)	1386
MscI	TGGCCA	1 cut(s)	1386
MseI	TTAA	7 cut(s)	89, 399, 591, 618, 776, 830, 1464
Msp20I	TGGCCA	1 cut(s)	1386
MspA1I	CMGCKG	4 cut(s)	41, 224, 278, 468
MspI	CCGG	2 cut(s)	959, 1023
MspR9I	CCNGG	1 cut(s)	368
Mva1269I	GAATGC	3 cut(s)	201, 957, 1101
MvaI	CCWGG	1 cut(s)	368
MvnI	CGCG	1 cut(s)	468
MwoI	GCNNNNNNNGC	5 cut(s)	230, 872, 968, 1011, 1201
NcoI	CCATGG	2 cut(s)	1324, 1392
NlaIII	CATG	3 cut(s)	1316, 1328, 1396
NlaIV	GGNNCC	3 cut(s)	114, 772, 1365
NmuCI	GTSAC	1 cut(s)	217
NspV	TTCGAA	1 cut(s)	897
PctI	GAATGC	3 cut(s)	201, 957, 1101
PfeI	GAWTC	7 cut(s)	131, 550, 634, 748, 859, 1427, 1478
PflMI	CCANNNNNTGG	1 cut(s)	1393
PfoI	TCCNGGA	1 cut(s)	366
PkrI	GCNGC	5 cut(s)	43, 46, 280, 868, 1114
PleI	GAGTC	1 cut(s)	1034
PpsI	GAGTC	1 cut(s)	1034
PpuMI	RGGWCCY	1 cut(s)	113
PsiI	TTATAA	1 cut(s)	1121
Psp5II	RGGWCCY	1 cut(s)	113
Psp6I	CCWGG	1 cut(s)	366
PspGI	CCWGG	1 cut(s)	366
PspN4I	GGNNCC	3 cut(s)	114, 772, 1365
PspPI	GGNCC	5 cut(s)	113, 152, 287, 978, 1321
PspPPI	RGGWCCY	1 cut(s)	113
PstNI	CAGNNNCTG	2 cut(s)	44, 872
PvuII	CAGCTG	2 cut(s)	41, 224
RsaI	GTAC	4 cut(s)	661, 766, 809, 1523
RsaNI	GTAC	4 cut(s)	660, 765, 808, 1522
SacII	CCGCGG	1 cut(s)	469
SaqAI	TTAA	7 cut(s)	89, 399, 591, 618, 776, 830, 1464
SatI	GCNGC	5 cut(s)	42, 45, 279, 867, 1113
Sau96I	GGNCC	5 cut(s)	113, 152, 287, 978, 1321
ScaI	AGTACT	1 cut(s)	1523
SchI	GAGTC	1 cut(s)	1035
ScrFI	CCNGG	1 cut(s)	368
SduI	GDGCHC	2 cut(s)	1016, 1336
SfaNI	GCATC	3 cut(s)	907, 1333, 1417
SfcI	CTRYAG	2 cut(s)	720, 1089
Sfr303I	CCGCGG	1 cut(s)	469
SfuI	TTCGAA	1 cut(s)	897
SgrBI	CCGCGG	1 cut(s)	469
SinI	GGWCC	3 cut(s)	113, 978, 1321
SmlI	CTYRAG	1 cut(s)	1103
SmoI	CTYRAG	1 cut(s)	1103
SsiI	CCGC	5 cut(s)	278, 330, 466, 468, 1209
SspMI	CTAG	4 cut(s)	414, 555, 578, 789
StyD4I	CCNGG	1 cut(s)	366
StyI	CCWWGG	2 cut(s)	1324, 1392
TaaI	ACNGT	4 cut(s)	1338, 1404, 1489, 1579
TaqI	TCGA	4 cut(s)	548, 897, 1341, 1484
TatI	WGTACW	1 cut(s)	1521
TauI	GCSGC	1 cut(s)	281
TfiI	GAWTC	7 cut(s)	131, 550, 634, 748, 859, 1427, 1478
Tru1I	TTAA	7 cut(s)	89, 399, 591, 618, 776, 830, 1464
Tru9I	TTAA	7 cut(s)	89, 399, 591, 618, 776, 830, 1464
TscAI	CASTG	4 cut(s)	28, 578, 919, 1363
TseFI	GTSAC	1 cut(s)	217
TseI	GCWGC	4 cut(s)	41, 44, 866, 1112
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	3 cut(s)	729, 1301, 1440
TspRI	CASTG	4 cut(s)	28, 578, 919, 1363
Van91I	CCANNNNNTGG	1 cut(s)	1393
VpaK11BI	GGWCC	3 cut(s)	113, 978, 1321
XapI	RAATTY	3 cut(s)	417, 1075, 1640
XcmI	CCANNNNNNNNNTGG	1 cut(s)	792
XspI	CTAG	4 cut(s)	414, 555, 578, 789
ZrmI	AGTACT	1 cut(s)	1523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.