Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002560.1

Orthogroup ID

OG0011098

Physical Location & Seq

Genomic Coordinates Reverse (-)

52492 .. 55953

Gene Structure 3462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002560.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1533 bp

atgagggtgattaccttgttgttgatgagatcttggggttggagatgggtggggtcattctgtgatggggagactttggaggaggaagagatggagattgagggggttttgggtgtgggtttgtggatgggtgaagagggaatggtcagtgatgtcaaggatacagctgctgccaaaccaaacccaaagttgacacttttgcctcttatagctctaattttctatgaggtttcagggggtccttttggagttgaggattcagtcagggctggaggaggccctcttttgtcattgcttggtttcttagtgtttcccttgttttggagcattccagaagctttggtgacagctgagcttgccacaagcttccctgaaaatggtggatatgtgctttggatatcagcggctttcgggccattttgggattccaagagggctcttttgggaataacattctcattgacttacttgaattaccgcggactgcatattgtcgggttctctgctgtttcacttgctgttttctcactttgcccatttatcgtgatggctattctttctattcctagaattagggtcaagcagtggctagttgtggactttaagaaggtggagtggaggggatacttcaatagtatgttttggaatctgaattactgggataaggcaagtacccttgcaggggaggttgaaaatccaaacaagacatttccaaaggcgctccttggggctgtagttgtggtggtttgttcatatttgattccacttcttgctggtacaggagccttaaactccccatctagcgagtggactgatgggtactttgcggaagttgggatgttaataggtggcgtttggctcaagtggtggattcaagcagcttctgcaatgtctaacttggggttgttcgaagcagaaatgagcagtgatgcctttcaacttcttgggatgagcgagatgggaatgcttccggctatatttgcttcaaggtctaagtatggaacacctaccataagcattttgtgctctgccaccggagtcatcttcttgtcgtggatgagttttcaggaaatcttggagtttttgaatttcttatacgctataggaatgcttcttgagtttgctgcttttataaaattgagaataaagaagccagaccttcacagaccttaccgagttcccttccagacatttggggtaacaatgctttgcctgcctcccgctttgttgcttattctcgttatgtgcttggcttctctgaggacattcttagtaagtggtgtggtgattatagtgggtcttttgttataccctcttttagttcatgcaaaggaccatggatgggcacagttcgatgcagaacgacccactgaggctcccaagaattgttcggatggcccctctactgtctcacagttgcatcaagaagttcaagatgaatcttctgttagccttctctcagacttgccatctgttaatgcagaacaagaatcttcgacaataaggccagaagaagccttcaaattagagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015179 GO:0015203 GO:0015291 GO:0015297 GO:0015318 GO:0015711 GO:0015807 GO:0015846 GO:0015849 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1902047 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2

Protein Analysis

510

Amino Acids

56.3

Weight (kDa)

4.94

Isoelectric Point (pI)

39.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19553
fragaria_vesca	FvH4_2g03970
malus_domestica	MD05G1096900.v1.1
prunus_persica	Prupe.8G141300_v2.0.a1 Prupe.8G141300_v2.0.a1 Prupe.8G141300_v2.0.a1
pyrus_communis	pycom05g09560
rosa_chinensis	RchiOBHm_Chr6g0253031 RchiOBHm_Chr6g0253191
rosa_laevigata	RLG00000015042
rosa_multiflora	Rmu_sc0002560.1_g000012 Rmu_sc0003855.1_g000010 Rmu_sc0003898.1_g000001
rosa_roxburghii	Rroxscaffold_7G00212180
rosa_rugosa	Rorug05G0542900
rosa_samantha	Rh6AG056900 Rh6BG051500 Rh6CG049300 Rh6DG045000
rosa_wichuraiana	Rw6G005200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1133
AccII	CGCG	1 cut(s)	480
AciI	CCGC	5 cut(s)	404, 478, 480, 827, 1221
AcsI	RAATTY	1 cut(s)	1087
AfaI	GTAC	3 cut(s)	673, 778, 821
AfiI	CCNNNNNNNGG	5 cut(s)	321, 377, 681, 682, 1342
AgsI	TTSAA	9 cut(s)	472, 631, 692, 875, 938, 987, 1087, 1433, 1522
AluBI	AGCT	7 cut(s)	167, 212, 338, 350, 355, 366, 881
AluI	AGCT	7 cut(s)	167, 212, 338, 350, 355, 366, 881
Alw21I	GWGCWC	1 cut(s)	1028
Alw26I	GTCTC	2 cut(s)	65, 1414
AlwNI	CAGNNNCTG	2 cut(s)	170, 884
AoxI	GGCC	4 cut(s)	277, 413, 1396, 1505
ApeKI	GCWGC	4 cut(s)	167, 170, 878, 1124
ApoI	RAATTY	1 cut(s)	1087
AspLEI	GCGC	1 cut(s)	721
AspS9I	GGNCC	5 cut(s)	239, 278, 413, 1333, 1397
AsuHPI	GGTGA	4 cut(s)	19, 143, 355, 1297
AsuII	TTCGAA	1 cut(s)	909
AvaII	GGWCC	2 cut(s)	239, 1333
BaeGI	GKGCMC	1 cut(s)	1348
BanII	GRGCYC	1 cut(s)	439
Bbv12I	GWGCWC	1 cut(s)	1028
BbvI	GCAGC	4 cut(s)	154, 157, 890, 1111
BciVI	GTATCC	2 cut(s)	154, 617
BcoDI	GTCTC	2 cut(s)	65, 1414
BfaI	CTAG	3 cut(s)	567, 590, 801
BfmI	CTRYAG	2 cut(s)	732, 1101
BfoI	RGCGCY	1 cut(s)	722
BfuI	GTATCC	2 cut(s)	154, 617
BglII	AGATCT	1 cut(s)	29
BisI	GCNGC	5 cut(s)	168, 171, 405, 879, 1125
BlpI	GCTNAGC	1 cut(s)	351
BlsI	GCNGC	5 cut(s)	169, 172, 406, 880, 1126
Bme18I	GGWCC	2 cut(s)	239, 1333
BmgT120I	GGNCC	5 cut(s)	239, 278, 413, 1333, 1397
BmiI	GGNNCC	4 cut(s)	240, 784, 1377, 1399
BmrI	ACTGGG	1 cut(s)	667
BmsI	GCATC	3 cut(s)	919, 1345, 1429
BmuI	ACTGGG	1 cut(s)	667
BpmI	CTGGAG	1 cut(s)	291
Bpu1102I	GCTNAGC	1 cut(s)	351
Bpu14I	TTCGAA	1 cut(s)	909
BpuEI	CTTGAG	2 cut(s)	845, 1136
BsaJI	CCNNGG	3 cut(s)	478, 724, 1336
BsaWI	WCCGGW	1 cut(s)	1034
BsaXI	ACNNNNNCTCC	2 cut(s)	1360, 1390
Bsc4I	CCNNNNNNNGG	5 cut(s)	321, 377, 681, 682, 1342
Bse1I	ACTGG	1 cut(s)	662
Bse3DI	GCAATG	2 cut(s)	290, 894
BseDI	CCNNGG	3 cut(s)	478, 724, 1336
BseGI	GGATG	6 cut(s)	132, 843, 954, 1062, 1346, 1399
BseLI	CCNNNNNNNGG	5 cut(s)	321, 377, 681, 682, 1342
BseMI	GCAATG	2 cut(s)	290, 894
BseMII	CTCAG	4 cut(s)	342, 1250, 1362, 1473
BseNI	ACTGG	1 cut(s)	662
BseRI	GAGGAG	2 cut(s)	95, 288
BseSI	GKGCMC	1 cut(s)	1348
BseXI	GCAGC	4 cut(s)	154, 157, 890, 1111
Bsh1236I	CGCG	1 cut(s)	480
BshFI	GGCC	4 cut(s)	279, 415, 1398, 1507
BsiHKAI	GWGCWC	1 cut(s)	1028
BsiSI	CCGG	2 cut(s)	971, 1035
BslI	CCNNNNNNNGG	5 cut(s)	321, 377, 681, 682, 1342
BsmAI	GTCTC	2 cut(s)	65, 1414
BsmI	GAATGC	3 cut(s)	327, 969, 1113
BsnI	GGCC	4 cut(s)	279, 415, 1398, 1507
Bsp119I	TTCGAA	1 cut(s)	909
Bsp1286I	GDGCHC	3 cut(s)	439, 1028, 1348
Bsp143I	GATC	1 cut(s)	29
Bsp1720I	GCTNAGC	1 cut(s)	351
Bsp19I	CCATGG	1 cut(s)	1336
BspACI	CCGC	5 cut(s)	404, 478, 480, 827, 1221
BspANI	GGCC	4 cut(s)	279, 415, 1398, 1507
BspCNI	CTCAG	4 cut(s)	343, 1251, 1363, 1472
BspFNI	CGCG	1 cut(s)	480
BspLI	GGNNCC	4 cut(s)	240, 784, 1377, 1399
BspT104I	TTCGAA	1 cut(s)	909
BsrDI	GCAATG	2 cut(s)	290, 894
BsrI	ACTGG	1 cut(s)	662
BssECI	CCNNGG	3 cut(s)	478, 724, 1336
BssMI	GATC	1 cut(s)	29
BssT1I	CCWWGG	2 cut(s)	724, 1336
Bst4CI	ACNGT	3 cut(s)	1350, 1408, 1416
Bst6I	CTCTTC	2 cut(s)	81, 129
BstAPI	GCANNNNNTGC	2 cut(s)	884, 1023
BstBI	TTCGAA	1 cut(s)	909
BstC8I	GCNNGC	2 cut(s)	357, 1214
BstDEI	CTNAG	7 cut(s)	304, 351, 993, 1259, 1270, 1371, 1459
BstDSI	CCRYGG	2 cut(s)	478, 1336
BstF5I	GGATG	6 cut(s)	132, 843, 954, 1062, 1346, 1399
BstFNI	CGCG	1 cut(s)	480
BstH2I	RGCGCY	1 cut(s)	722
BstHHI	GCGC	1 cut(s)	721
BstKTI	GATC	1 cut(s)	32
BstMAI	GTCTC	2 cut(s)	65, 1414
BstMBI	GATC	1 cut(s)	29
BstMWI	GCNNNNNNNGC	5 cut(s)	356, 884, 980, 1023, 1213
BstSFI	CTRYAG	2 cut(s)	732, 1101
BstSLI	GKGCMC	1 cut(s)	1348
BstUI	CGCG	1 cut(s)	480
BstV1I	GCAGC	4 cut(s)	154, 157, 890, 1111
BstX2I	RGATCY	1 cut(s)	29
BstXI	CCANNNNNNTGG	1 cut(s)	1193
BstYI	RGATCY	1 cut(s)	29
BsuI	GTATCC	2 cut(s)	154, 617
BsuRI	GGCC	4 cut(s)	279, 415, 1398, 1507
BtgI	CCRYGG	2 cut(s)	478, 1336
BtsCI	GGATG	6 cut(s)	132, 843, 954, 1062, 1346, 1399
BtsI	GCAGTG	2 cut(s)	590, 931
BtsIMutI	CAGTG	4 cut(s)	154, 590, 931, 1368
Cac8I	GCNNGC	2 cut(s)	357, 1214
CaiI	CAGNNNCTG	2 cut(s)	170, 884
CfoI	GCGC	1 cut(s)	721
Cfr13I	GGNCC	5 cut(s)	239, 278, 413, 1333, 1397
Cfr42I	CCGCGG	1 cut(s)	481
Csp6I	GTAC	3 cut(s)	672, 777, 820
CviAII	CATG	2 cut(s)	1325, 1337
CviQI	GTAC	3 cut(s)	672, 777, 820
DdeI	CTNAG	7 cut(s)	304, 351, 993, 1259, 1270, 1371, 1459
DpnI	GATC	1 cut(s)	31
DpnII	GATC	1 cut(s)	29
Eam1104I	CTCTTC	2 cut(s)	81, 129
EarI	CTCTTC	2 cut(s)	81, 129
Eco130I	CCWWGG	2 cut(s)	724, 1336
Eco24I	GRGCYC	1 cut(s)	439
Eco32I	GATATC	1 cut(s)	399
Eco47I	GGWCC	2 cut(s)	239, 1333
EcoO109I	RGGNCCY	2 cut(s)	239, 278
EcoRV	GATATC	1 cut(s)	399
EcoT14I	CCWWGG	2 cut(s)	724, 1336
EcoT38I	GRGCYC	1 cut(s)	439
ErhI	CCWWGG	2 cut(s)	724, 1336
FaeI	CATG	2 cut(s)	1328, 1340
FatI	CATG	2 cut(s)	1324, 1336
FauI	CCCGC	1 cut(s)	1228
Fnu4HI	GCNGC	5 cut(s)	168, 171, 405, 879, 1125
FokI	GGATG	6 cut(s)	139, 850, 961, 1069, 1353, 1406
FriOI	GRGCYC	1 cut(s)	439
Fsp4HI	GCNGC	5 cut(s)	168, 171, 405, 879, 1125
FspBI	CTAG	3 cut(s)	567, 590, 801
GlaI	GCGC	1 cut(s)	720
GluI	GCNGC	5 cut(s)	168, 171, 405, 879, 1125
GsuI	CTGGAG	1 cut(s)	291
HaeII	RGCGCY	1 cut(s)	722
HaeIII	GGCC	4 cut(s)	279, 415, 1398, 1507
HapII	CCGG	2 cut(s)	971, 1035
HhaI	GCGC	1 cut(s)	721
Hin1II	CATG	2 cut(s)	1328, 1340
Hin6I	GCGC	1 cut(s)	719
HinP1I	GCGC	1 cut(s)	719
HincII	GTYRAC	1 cut(s)	192
HindII	GTYRAC	1 cut(s)	192
HindIII	AAGCTT	2 cut(s)	336, 364
HinfI	GANTC	8 cut(s)	257, 425, 646, 760, 871, 1038, 1439, 1490
HpaII	CCGG	2 cut(s)	971, 1035
HphI	GGTGA	4 cut(s)	19, 143, 355, 1297
Hpy166II	GTNNAC	3 cut(s)	192, 598, 810
Hpy188I	TCNGA	4 cut(s)	651, 1260, 1393, 1462
Hpy188III	TCNNGA	7 cut(s)	332, 544, 1067, 1115, 1186, 1424, 1433
Hpy8I	GTNNAC	3 cut(s)	192, 598, 810
HpyAV	CCTTC	5 cut(s)	601, 1169, 1192, 1463, 1528
HpyCH4III	ACNGT	3 cut(s)	1350, 1408, 1416
HpyCH4V	TGCA	7 cut(s)	487, 680, 887, 1328, 1358, 1420, 1481
HpyF10VI	GCNNNNNNNGC	5 cut(s)	356, 884, 980, 1023, 1213
HpyF3I	CTNAG	7 cut(s)	304, 351, 993, 1259, 1270, 1371, 1459
Hsp92II	CATG	2 cut(s)	1328, 1340
HspAI	GCGC	1 cut(s)	719
KspI	CCGCGG	1 cut(s)	481
Kzo9I	GATC	1 cut(s)	29
LmnI	GCTCC	4 cut(s)	324, 726, 782, 1381
Lsp1109I	GCAGC	4 cut(s)	154, 157, 890, 1111
LweI	GCATC	3 cut(s)	919, 1345, 1429
MaeI	CTAG	3 cut(s)	567, 590, 801
MaeIII	GTNAC	2 cut(s)	343, 1198
MalI	GATC	1 cut(s)	31
MboI	GATC	1 cut(s)	29
MboII	GAAGA	6 cut(s)	98, 146, 1036, 1434, 1485, 1523
MflI	RGATCY	1 cut(s)	29
MhlI	GDGCHC	3 cut(s)	439, 1028, 1348
MluCI	AATT	8 cut(s)	216, 472, 570, 652, 1087, 1136, 1384, 1523
MlyI	GAGTC	1 cut(s)	1047
MmeI	TCCRAC	1 cut(s)	20
MseI	TTAA	4 cut(s)	603, 788, 842, 1476
MspA1I	CMGCKG	4 cut(s)	167, 350, 404, 480
MspI	CCGG	2 cut(s)	971, 1035
Mva1269I	GAATGC	3 cut(s)	327, 969, 1113
MvnI	CGCG	1 cut(s)	480
MwoI	GCNNNNNNNGC	5 cut(s)	356, 884, 980, 1023, 1213
NcoI	CCATGG	1 cut(s)	1336
NdeII	GATC	1 cut(s)	29
NlaIII	CATG	2 cut(s)	1328, 1340
NlaIV	GGNNCC	4 cut(s)	240, 784, 1377, 1399
NmuCI	GTSAC	1 cut(s)	343
NspV	TTCGAA	1 cut(s)	909
PctI	GAATGC	3 cut(s)	327, 969, 1113
PfeI	GAWTC	7 cut(s)	257, 425, 646, 760, 871, 1439, 1490
PkrI	GCNGC	5 cut(s)	169, 172, 406, 880, 1126
PleI	GAGTC	1 cut(s)	1046
PpsI	GAGTC	1 cut(s)	1046
PpuMI	RGGWCCY	1 cut(s)	239
PsiI	TTATAA	1 cut(s)	1133
Psp5II	RGGWCCY	1 cut(s)	239
PspN4I	GGNNCC	4 cut(s)	240, 784, 1377, 1399
PspPI	GGNCC	5 cut(s)	239, 278, 413, 1333, 1397
PspPPI	RGGWCCY	1 cut(s)	239
PstNI	CAGNNNCTG	2 cut(s)	170, 884
PsuI	RGATCY	1 cut(s)	29
PvuII	CAGCTG	2 cut(s)	167, 350
RsaI	GTAC	3 cut(s)	673, 778, 821
RsaNI	GTAC	3 cut(s)	672, 777, 820
SacII	CCGCGG	1 cut(s)	481
SaqAI	TTAA	4 cut(s)	603, 788, 842, 1476
SatI	GCNGC	5 cut(s)	168, 171, 405, 879, 1125
Sau3AI	GATC	1 cut(s)	29
Sau96I	GGNCC	5 cut(s)	239, 278, 413, 1333, 1397
SchI	GAGTC	1 cut(s)	1047
SduI	GDGCHC	3 cut(s)	439, 1028, 1348
SfaNI	GCATC	3 cut(s)	919, 1345, 1429
SfcI	CTRYAG	2 cut(s)	732, 1101
Sfr303I	CCGCGG	1 cut(s)	481
SfuI	TTCGAA	1 cut(s)	909
SgrBI	CCGCGG	1 cut(s)	481
SinI	GGWCC	2 cut(s)	239, 1333
SmlI	CTYRAG	2 cut(s)	860, 1115
SmoI	CTYRAG	2 cut(s)	860, 1115
Sse9I	AATT	8 cut(s)	216, 472, 570, 652, 1087, 1136, 1384, 1523
SsiI	CCGC	5 cut(s)	404, 478, 480, 827, 1221
SspMI	CTAG	3 cut(s)	567, 590, 801
StyI	CCWWGG	2 cut(s)	724, 1336
TaaI	ACNGT	3 cut(s)	1350, 1408, 1416
TaqI	TCGA	3 cut(s)	909, 1353, 1496
TasI	AATT	8 cut(s)	216, 472, 570, 652, 1087, 1136, 1384, 1523
TauI	GCSGC	1 cut(s)	407
TfiI	GAWTC	7 cut(s)	257, 425, 646, 760, 871, 1439, 1490
Tru1I	TTAA	4 cut(s)	603, 788, 842, 1476
Tru9I	TTAA	4 cut(s)	603, 788, 842, 1476
TscAI	CASTG	4 cut(s)	154, 590, 931, 1375
TseFI	GTSAC	1 cut(s)	343
TseI	GCWGC	4 cut(s)	167, 170, 878, 1124
Tsp45I	GTSAC	1 cut(s)	343
TspDTI	ATGAA	3 cut(s)	741, 1313, 1452
TspRI	CASTG	4 cut(s)	154, 590, 931, 1375
VpaK11BI	GGWCC	2 cut(s)	239, 1333
XapI	RAATTY	1 cut(s)	1087
XcmI	CCANNNNNNNNNTGG	1 cut(s)	804
XspI	CTAG	3 cut(s)	567, 590, 801

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.