MD05G1096900.v1.1

polyamine transporter

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Reverse (-)
20291660 .. 20293994
2335 bp
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UTR
Exon/CDS
Intron
MD05G1096900.v1.1.491

Sequence Viewer

Length: 1530 bp
ATGTGGATGGCGGAAGAGGGAATAATGGTCAGTGAATCCAAGAACGCACCTGCAAAAACAAGTCCAAAGCTGACCCTGTTGCCTCTCATAGCTTTAATTTTCTATGAGGTTTCTGGCGGTCCTTTTGGAGTGGAGGATTCCGTCAGGGCCGGTGGCGGCCCTCTTCTGTCTCTGCTTGGTTTCTTAGTGTTTCCTTTGATTTGGAGCATCCCAGAAGCTTTAGTGACGGCTGAGCTGGCCACAAGCTTCCCGGAAAATGGCGGATATGTGCTTTGGATATCAGCAGCTTTTGGGCCTTTCTGGGGTTTCCAGGAGGGTTTCTGGAAATGGTTTAGTGGGGTTATGGACAATGCTCTTTACCCTGTCCTGTTCCTCGATTACTTGAAGCATTCGTTTCCTATTTTTAACCTGATGGTTGCTCGAATTCCAGCTCTTTTAGGAATAACTTTCTCATTGACTTACTTGAATTACCGCGGATTGCATATTGTCGGGTTCTCTGCAGTTTCCCTTGCAGTTTTCTCCCTTTGCCCATTTGTTGTAATGGCGATTATCTCAATTCCTAGGATAAGGGTTAAGCAGTGGCTAGTTGTAGATTTTAAGAAAGTGGAATGGAGGGGATACTTCAATAGCATGTTTTGGAATCTGAATTATTGGGATAAGGCAAGTACACTTGCAGGGGAGGTTGAAAATCCCAGCAAGACTTTTCCGAAGGCGCTTCTTGGGGCTGTAGTTGTGGTTGTTTCTTCGTATTTGATTCCGCTTCTTGCCGGAACTGGAGCTTTAAACTCTGCATCTAGTGAGTGGACTGATGGGTATTTTGCACAAGTTGGGATGTTGATAGGTGGCGTCTGGCTTAAGTGGTGGATTCAAGCCGCTGCTGCAATGTCTAACATGGGGTTGTTTGAAGCAGAAATGAGTAGTGATGCTTTTCAACTTCTTGGGATGAGTGAGATGGGAATGCTTCCTGCGATATTTGCTTCAAGGTCAAAGTATGGAACACCTACCATTAGCATTTTGTGCTCTGCTACCGGAGTTATCTTCTTGTCGTGGATGAGCTTTCAAGAAATCTTGGAATTTCTTAATTTCTTATACGCCATAGGAATGCTTCTGGAGTTCGCAGCTTTTATTAAACTGAGAGTGAAGAAGCCAGACCTTCATAGACCGTACAAAGTTCCCTTCGAAACATTCGGAGCAACAATGCTTTGCCTGCCCCCTGCATTGTTACTTGTTCTTGTTATGTGCTTGGCTTCTCTGAAGACTTTCTTTGTAAGTGGTGCTGTAATTATCTTTGGGGTTTTGTTGTACCTTCTTTTAGTTCAAGCAAAGGATAGAAAGTGGGTGCGTTTCGATGGAGAACAACCTGCTGAGACTCCCATTCACTGTCCGGATGGCCATTCCGCGGTTTCACACTTGCATGAAGAAGGTGCAGACGAGGCTGCAGTCGGCCTGCTCACAGACTTGTCATCGGTTGATACAGAACAAGAGTCCTCCAAGTTAAGGTCCGAAGAAGAAGCCTTGAAGTTAGAGTAG

Protein Analysis

510

Amino Acids

56.19

Weight (kDa)

5.27

Isoelectric Point (pI)

35.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AA_permease_2 PF13520 25 - 407 9.6e-29 Amino acid permease
AA_permease PF00324 50 - 419 2.2e-12 Amino acid permease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 58
Acc36I ACCTGC 2 cut(s) 58, 1369
AccII CGCG 2 cut(s) 474, 1400
AccIII TCCGGA 1 cut(s) 1384
AcoI YGGCCR 2 cut(s) 237, 1390
AcsI RAATTY 2 cut(s) 423, 1073
AcuI CTGAAG 1 cut(s) 1274
AcyI GRCGYC 1 cut(s) 846
AfaI GTAC 3 cut(s) 667, 1166, 1304
AfiI CCNNNNNNNGG 4 cut(s) 257, 302, 1399, 1497
AflII CTTAAG 1 cut(s) 854
AjnI CCWGG 1 cut(s) 309
Alw21I GWGCWC 1 cut(s) 1022
Alw26I GTCTC 2 cut(s) 174, 1361
Aor13HI TCCGGA 1 cut(s) 1384
AoxI GGCC 6 cut(s) 147, 157, 237, 293, 1390, 1444
ApeKI GCWGC 5 cut(s) 284, 875, 878, 1118, 1436
ApoI RAATTY 2 cut(s) 423, 1073
Asp700I GAANNNNTTC 1 cut(s) 1259
AspA2I CCTAGG 1 cut(s) 560
AspLEI GCGC 1 cut(s) 715
AspS9I GGNCC 5 cut(s) 119, 147, 158, 293, 1500
AsuC2I CCSGG 1 cut(s) 251
AsuII TTCGAA 1 cut(s) 1179
AvaII GGWCC 2 cut(s) 119, 1500
AvrII CCTAGG 1 cut(s) 560
BalI TGGCCA 2 cut(s) 239, 1392
BbsI GAAGAC 1 cut(s) 1262
Bbv12I GWGCWC 1 cut(s) 1022
BbvI GCAGC 5 cut(s) 296, 862, 865, 1130, 1423
BccI CCATC 5 cut(s) 406, 803, 946, 1343, 1382
BceAI ACGGC 1 cut(s) 243
BciT130I CCWGG 1 cut(s) 311
BciVI GTATCC 1 cut(s) 611
BcnI CCSGG 1 cut(s) 251
BcoDI GTCTC 2 cut(s) 174, 1361
BfaI CTAG 3 cut(s) 561, 584, 795
BfmI CTRYAG 3 cut(s) 498, 726, 1437
BfoI RGCGCY 1 cut(s) 716
BfrI CTTAAG 1 cut(s) 854
BfuAI ACCTGC 2 cut(s) 58, 1369
BfuI GTATCC 1 cut(s) 611
BisI GCNGC 7 cut(s) 157, 285, 873, 876, 879, 1119, 1437
BlnI CCTAGG 1 cut(s) 560
BlpI GCTNAGC 1 cut(s) 231
BlsI GCNGC 7 cut(s) 158, 286, 874, 877, 880, 1120, 1438
Bme1390I CCNGG 2 cut(s) 251, 311
Bme18I GGWCC 2 cut(s) 119, 1500
BmgT120I GGNCC 5 cut(s) 119, 147, 158, 293, 1500
BmrFI CCNGG 2 cut(s) 251, 311
BmsI GCATC 3 cut(s) 216, 800, 913
BpiI GAAGAC 1 cut(s) 1262
BpmI CTGGAG 2 cut(s) 795, 1130
Bpu1102I GCTNAGC 1 cut(s) 231
Bpu14I TTCGAA 1 cut(s) 1179
BpuMI CCSGG 1 cut(s) 251
BsaHI GRCGYC 1 cut(s) 846
BsaJI CCNNGG 3 cut(s) 472, 560, 1398
BsaWI WCCGGW 2 cut(s) 1028, 1384
Bsc4I CCNNNNNNNGG 4 cut(s) 257, 302, 1399, 1497
Bse118I RCCGGY 1 cut(s) 149
Bse1I ACTGG 1 cut(s) 778
Bse3DI GCAATG 1 cut(s) 888
BseAI TCCGGA 1 cut(s) 1384
BseBI CCWGG 1 cut(s) 311
BseDI CCNNGG 3 cut(s) 472, 560, 1398
BseGI GGATG 6 cut(s) 12, 207, 837, 948, 1056, 1393
BseLI CCNNNNNNNGG 4 cut(s) 257, 302, 1399, 1497
BseMI GCAATG 1 cut(s) 888
BseMII CTCAG 3 cut(s) 222, 1124, 1356
BseNI ACTGG 1 cut(s) 778
BseXI GCAGC 5 cut(s) 296, 862, 865, 1130, 1423
BseYI CCCAGC 1 cut(s) 692
BsgI GTGCAG 1 cut(s) 1446
Bsh1236I CGCG 2 cut(s) 474, 1400
BshFI GGCC 6 cut(s) 149, 159, 239, 295, 1392, 1446
BsiHKAI GWGCWC 1 cut(s) 1022
BsiSI CCGG 5 cut(s) 150, 251, 768, 1029, 1385
BslI CCNNNNNNNGG 4 cut(s) 257, 302, 1399, 1497
BsmAI GTCTC 2 cut(s) 174, 1361
BsmI GAATGC 3 cut(s) 388, 963, 1107
BsnI GGCC 6 cut(s) 149, 159, 239, 295, 1392, 1446
Bsp119I TTCGAA 1 cut(s) 1179
Bsp1286I GDGCHC 1 cut(s) 1022
Bsp13I TCCGGA 1 cut(s) 1384
Bsp1720I GCTNAGC 1 cut(s) 231
BspANI GGCC 6 cut(s) 149, 159, 239, 295, 1392, 1446
BspCNI CTCAG 3 cut(s) 223, 1125, 1357
BspEI TCCGGA 1 cut(s) 1384
BspFNI CGCG 2 cut(s) 474, 1400
BspMAI CTGCAG 2 cut(s) 502, 1441
BspMI ACCTGC 2 cut(s) 58, 1369
BspT104I TTCGAA 1 cut(s) 1179
BspTI CTTAAG 1 cut(s) 854
BsrDI GCAATG 1 cut(s) 888
BsrFI RCCGGY 1 cut(s) 149
BsrI ACTGG 1 cut(s) 778
BssAI RCCGGY 1 cut(s) 149
BssECI CCNNGG 3 cut(s) 472, 560, 1398
BssNI GRCGYC 1 cut(s) 846
BssT1I CCWWGG 1 cut(s) 560
Bst2UI CCWGG 1 cut(s) 311
Bst4CI ACNGT 2 cut(s) 1164, 1382
Bst6I CTCTTC 2 cut(s) 9, 168
BstACI GRCGYC 1 cut(s) 846
BstAFI CTTAAG 1 cut(s) 854
BstAPI GCANNNNNTGC 1 cut(s) 1017
BstBI TTCGAA 1 cut(s) 1179
BstC8I GCNNGC 3 cut(s) 237, 1208, 1448
BstDEI CTNAG 4 cut(s) 184, 231, 1133, 1365
BstDSI CCRYGG 2 cut(s) 472, 1398
BstF5I GGATG 6 cut(s) 12, 207, 837, 948, 1056, 1393
BstFNI CGCG 2 cut(s) 474, 1400
BstH2I RGCGCY 1 cut(s) 716
BstHHI GCGC 1 cut(s) 715
BstMAI GTCTC 2 cut(s) 174, 1361
BstMWI GCNNNNNNNGC 6 cut(s) 236, 878, 974, 1017, 1207, 1433
BstNI CCWGG 1 cut(s) 311
BstNSI RCATGY 1 cut(s) 634
BstSCI CCNGG 2 cut(s) 249, 309
BstSFI CTRYAG 3 cut(s) 498, 726, 1437
BstUI CGCG 2 cut(s) 474, 1400
BstV1I GCAGC 5 cut(s) 296, 862, 865, 1130, 1423
BstV2I GAAGAC 1 cut(s) 1262
BsuI GTATCC 1 cut(s) 611
BsuRI GGCC 6 cut(s) 149, 159, 239, 295, 1392, 1446
BtgI CCRYGG 2 cut(s) 472, 1398
BtsCI GGATG 6 cut(s) 12, 207, 837, 948, 1056, 1393
BtsI GCAGTG 1 cut(s) 584
BtsIMutI CAGTG 3 cut(s) 37, 584, 1378
BveI ACCTGC 2 cut(s) 58, 1369
Cac8I GCNNGC 3 cut(s) 237, 1208, 1448
CfoI GCGC 1 cut(s) 715
Cfr10I RCCGGY 1 cut(s) 149
Cfr13I GGNCC 5 cut(s) 119, 147, 158, 293, 1500
Cfr42I CCGCGG 2 cut(s) 475, 1401
CseI GACGC 1 cut(s) 835
Csp6I GTAC 3 cut(s) 666, 1165, 1303
CviAII CATG 3 cut(s) 631, 892, 1415
CviQI GTAC 3 cut(s) 666, 1165, 1303
DdeI CTNAG 4 cut(s) 184, 231, 1133, 1365
DraI TTTAAA 1 cut(s) 783
EaeI YGGCCR 2 cut(s) 237, 1390
Eam1104I CTCTTC 2 cut(s) 9, 168
EarI CTCTTC 2 cut(s) 9, 168
EciI GGCGGA 2 cut(s) 26, 276
Eco130I CCWWGG 1 cut(s) 560
Eco32I GATATC 1 cut(s) 279
Eco47I GGWCC 2 cut(s) 119, 1500
Eco57I CTGAAG 1 cut(s) 1274
EcoRI GAATTC 1 cut(s) 423
EcoRII CCWGG 1 cut(s) 309
EcoRV GATATC 1 cut(s) 279
EcoT14I CCWWGG 1 cut(s) 560
ErhI CCWWGG 1 cut(s) 560
FaeI CATG 3 cut(s) 634, 895, 1418
FalI AAGNNNNNCTT 2 cut(s) 1247, 1279
FatI CATG 3 cut(s) 630, 891, 1414
Fnu4HI GCNGC 7 cut(s) 157, 285, 873, 876, 879, 1119, 1437
FokI GGATG 6 cut(s) 19, 194, 844, 955, 1063, 1400
Fsp4HI GCNGC 7 cut(s) 157, 285, 873, 876, 879, 1119, 1437
FspBI CTAG 3 cut(s) 561, 584, 795
GlaI GCGC 1 cut(s) 714
GluI GCNGC 7 cut(s) 157, 285, 873, 876, 879, 1119, 1437
GsaI CCCAGC 1 cut(s) 696
GsuI CTGGAG 2 cut(s) 795, 1130
HaeII RGCGCY 1 cut(s) 716
HaeIII GGCC 6 cut(s) 149, 159, 239, 295, 1392, 1446
HapII CCGG 5 cut(s) 150, 251, 768, 1029, 1385
HgaI GACGC 1 cut(s) 835
HhaI GCGC 1 cut(s) 715
Hin1I GRCGYC 1 cut(s) 846
Hin1II CATG 3 cut(s) 634, 895, 1418
Hin6I GCGC 1 cut(s) 713
HinP1I GCGC 1 cut(s) 713
HindIII AAGCTT 2 cut(s) 216, 244
HinfI GANTC 7 cut(s) 35, 137, 640, 754, 865, 1369, 1484
HpaII CCGG 5 cut(s) 150, 251, 768, 1029, 1385
Hpy166II GTNNAC 2 cut(s) 668, 804
Hpy188I TCNGA 5 cut(s) 645, 708, 1190, 1254, 1504
Hpy188III TCNNGA 4 cut(s) 322, 1061, 1109, 1385
Hpy8I GTNNAC 2 cut(s) 668, 804
HpyAV CCTTC 5 cut(s) 703, 1163, 1186, 1316, 1415
HpyCH4III ACNGT 2 cut(s) 1164, 1382
HpyF10VI GCNNNNNNNGC 6 cut(s) 236, 878, 974, 1017, 1207, 1433
HpyF3I CTNAG 4 cut(s) 184, 231, 1133, 1365
Hsp92I GRCGYC 1 cut(s) 846
Hsp92II CATG 3 cut(s) 634, 895, 1418
HspAI GCGC 1 cut(s) 713
Kpn2I TCCGGA 1 cut(s) 1384
KspI CCGCGG 2 cut(s) 475, 1401
LmnI GCTCC 3 cut(s) 204, 776, 1190
Lsp1109I GCAGC 5 cut(s) 296, 862, 865, 1130, 1423
LweI GCATC 3 cut(s) 216, 800, 913
MaeI CTAG 3 cut(s) 561, 584, 795
MaeIII GTNAC 2 cut(s) 223, 1221
MboII GAAGA 9 cut(s) 26, 155, 735, 1030, 1153, 1267, 1430, 1517, 1520
MhlI GDGCHC 1 cut(s) 1022
MlsI TGGCCA 2 cut(s) 239, 1392
MluCI AATT 8 cut(s) 96, 423, 466, 555, 646, 1073, 1081, 1281
MluNI TGGCCA 2 cut(s) 239, 1392
MlyI GAGTC 2 cut(s) 1363, 1493
Mox20I TGGCCA 2 cut(s) 239, 1392
MroI TCCGGA 1 cut(s) 1384
MroXI GAANNNNTTC 1 cut(s) 1259
MscI TGGCCA 2 cut(s) 239, 1392
MseI TTAA 9 cut(s) 95, 405, 573, 597, 782, 855, 1080, 1128, 1496
MslI CAYNNNNRTG 2 cut(s) 1100, 1413
Msp20I TGGCCA 2 cut(s) 239, 1392
MspA1I CMGCKG 3 cut(s) 474, 875, 1400
MspCI CTTAAG 1 cut(s) 854
MspI CCGG 5 cut(s) 150, 251, 768, 1029, 1385
MspR9I CCNGG 2 cut(s) 251, 311
Mva1269I GAATGC 3 cut(s) 388, 963, 1107
MvaI CCWGG 1 cut(s) 311
MvnI CGCG 2 cut(s) 474, 1400
MwoI GCNNNNNNNGC 6 cut(s) 236, 878, 974, 1017, 1207, 1433
NciI CCSGG 1 cut(s) 251
NlaIII CATG 3 cut(s) 634, 895, 1418
NmuCI GTSAC 1 cut(s) 223
NspI RCATGY 1 cut(s) 634
NspV TTCGAA 1 cut(s) 1179
PaqCI CACCTGC 1 cut(s) 58
PctI GAATGC 3 cut(s) 388, 963, 1107
PdmI GAANNNNTTC 1 cut(s) 1259
PfeI GAWTC 5 cut(s) 35, 137, 640, 754, 865
PfoI TCCNGGA 2 cut(s) 249, 309
PkrI GCNGC 7 cut(s) 158, 286, 874, 877, 880, 1120, 1438
PleI GAGTC 2 cut(s) 1363, 1492
PpsI GAGTC 2 cut(s) 1363, 1492
Psp6I CCWGG 1 cut(s) 309
PspFI CCCAGC 1 cut(s) 692
PspGI CCWGG 1 cut(s) 309
PspPI GGNCC 5 cut(s) 119, 147, 158, 293, 1500
PstI CTGCAG 2 cut(s) 502, 1441
RsaI GTAC 3 cut(s) 667, 1166, 1304
RsaNI GTAC 3 cut(s) 666, 1165, 1303
RseI CAYNNNNRTG 2 cut(s) 1100, 1413
SacII CCGCGG 2 cut(s) 475, 1401
SaqAI TTAA 9 cut(s) 95, 405, 573, 597, 782, 855, 1080, 1128, 1496
SatI GCNGC 7 cut(s) 157, 285, 873, 876, 879, 1119, 1437
Sau96I GGNCC 5 cut(s) 119, 147, 158, 293, 1500
SchI GAGTC 2 cut(s) 1363, 1493
ScrFI CCNGG 2 cut(s) 251, 311
SduI GDGCHC 1 cut(s) 1022
SfaNI GCATC 3 cut(s) 216, 800, 913
SfcI CTRYAG 3 cut(s) 498, 726, 1437
Sfr303I CCGCGG 2 cut(s) 475, 1401
SfuI TTCGAA 1 cut(s) 1179
SgrBI CCGCGG 2 cut(s) 475, 1401
SinI GGWCC 2 cut(s) 119, 1500
SmiMI CAYNNNNRTG 2 cut(s) 1100, 1413
SmlI CTYRAG 1 cut(s) 854
SmoI CTYRAG 1 cut(s) 854
Sse9I AATT 8 cut(s) 96, 423, 466, 555, 646, 1073, 1081, 1281
SspMI CTAG 3 cut(s) 561, 584, 795
StyD4I CCNGG 2 cut(s) 249, 309
StyI CCWWGG 1 cut(s) 560
TaaI ACNGT 2 cut(s) 1164, 1382
TaqI TCGA 4 cut(s) 375, 421, 1179, 1347
TasI AATT 8 cut(s) 96, 423, 466, 555, 646, 1073, 1081, 1281
TatI WGTACW 1 cut(s) 665
TauI GCSGC 2 cut(s) 159, 875
TfiI GAWTC 5 cut(s) 35, 137, 640, 754, 865
Tru1I TTAA 9 cut(s) 95, 405, 573, 597, 782, 855, 1080, 1128, 1496
Tru9I TTAA 9 cut(s) 95, 405, 573, 597, 782, 855, 1080, 1128, 1496
TscAI CASTG 3 cut(s) 37, 584, 1385
TseFI GTSAC 1 cut(s) 223
TseI GCWGC 5 cut(s) 284, 875, 878, 1118, 1436
Tsp45I GTSAC 1 cut(s) 223
TspDTI ATGAA 2 cut(s) 1145, 1431
TspGWI ACGGA 1 cut(s) 130
TspRI CASTG 3 cut(s) 37, 584, 1385
Vha464I CTTAAG 1 cut(s) 854
VpaK11BI GGWCC 2 cut(s) 119, 1500
XapI RAATTY 2 cut(s) 423, 1073
XceI RCATGY 1 cut(s) 634
XmaJI CCTAGG 1 cut(s) 560
XmnI GAANNNNTTC 1 cut(s) 1259
XspI CTAG 3 cut(s) 561, 584, 795
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.