Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0011098

Physical Location & Seq

Genomic Coordinates Reverse (-)

3139214 .. 3141985

Gene Structure 2772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g03970.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1521 bp

ATGGGTGAAGAGGGACTGGTCAGTGATGTCAAGGACACAGCTGCTGCCAAACCAAACCCAAAGTTGACACTTCTGCCTCTTATAGCTCTGATTTTCTATGAGGTTTCTGGGGGTCCTTTTGGAGTTGAGGATTCAGTCAGGGCTGGAGGAGGCCCTCTTTTGGCATTGCTTGGTTTTTTGGTGTTTCCATTGTTTTGGAGCATTCCAGAAGCTTTGGTGACAGCTGAGCTTGCCACAAGCTTCCCTGAAAATGGTGGATATGTGCTGTGGATCCAAGCGGCTTTCGGGCCATTCTGGGGTTTCCAAGAGGGTTTCTGGAAATGGTTTAGTGGTGTTATGGACAATGCTTTATACCCAGTTTTATTCTTGGATTACTTGAAGCATTCATTTCCCATATTTAACCTGATGGTTGCTCGAATTCCAGCTCTTTTGGGAATAACATTCTCATTGACTTACTTGAATTACCGCGGGCTGCATATTGTTGGGTTCTCTGCGGTTTCCCTTGCTGTGTTCTCACTGTGCCCATTTGTTGTGATGGCTATTCTCTCGATTCCTAGAATTAGGGTCAAGCAGTGGCTAGTTGTGGACTTTAAAAAGGTGGAGTGGAGGGGATACTTCAATAGTATGTTTTGGAATCTGAATTACTGGGATAAGGCAAGTACCCTTGCAGGCGAGGTTGAAAATCCAAGCAAGACATTTCCAAAGGCTCTTCTTGGGGCTGTAGTTGTGGTGGTTTGTTCATACTTGATTCCACTTCTTGCTGGTACCGGAGCCTTAAATTCTCCATCTAGTGAGTGGACTGATGGATACTTTGCAGAAGTTGGGATGTTAATAGGTGGCGTTTGGCTCAAGTGGTGGATTCAAGCAGCTTCTGCAATGTCGAACTTGGGGTTGTTCGAGGCAGAAATGAGCAGTGATGCCTTTCAACTTCTTGGGATGAGTGAGATGGGAATGCTTCCGACTATATTTGCTTCAAGGTCTAAGTATGGAACTCCTACCATAAGTATTTTGTGCTCTGCCACTGGAGTCATCTTCTTGTCGTGGATGAGTTTTCAGGAAATCTTGGAGTTTTTGAATTTCTTATATGCTATAGGAATGCTTCTTGAGTTCGCTGCTTTTATAAAGTTGAGAATAAAGAAACCAGACCTTCACAGACCTTACCGAGTTCCCTTGCAAACATTTGGGGCAACAATGCTTTGCTTGCCTCCTGCATTGTTGCTTATTCTCGTTATGTGCTTGGCTTCTCTGAGGACTTTCTTCGTAAGTGGTGTGGTGATTATAGTGGGTCTTTTGTTATACCCTCTTTTAGTTCATGCAAAGGACCATAGATGGGCACAGTTTGAAGCTGAACTACCCACTGAGGCACCCAAGAACTGTTCGGACGGCCACTCTGTGGTTTCACATTTGCATCAAGAAGTTCAAGATGAATCTTCTGTTAGCCTTCTCTCGGACTTGCGATCTGTTAATGCAGAACAAGAATCTTCGACAATAAGGCCAGAAGAAGCCTTCAAATTAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015179 GO:0015203 GO:0015291 GO:0015297 GO:0015318 GO:0015711 GO:0015807 GO:0015846 GO:0015849 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1902047 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2

Protein Analysis

507

Amino Acids

56.04

Weight (kDa)

5.4

Isoelectric Point (pI)

35.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_permease_2	PF13520	23 - 405	1.4e-29	Amino acid permease
AA_permease	PF00324	48 - 418	1.9e-14	Amino acid permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19553
fragaria_vesca	FvH4_2g03970
malus_domestica	MD05G1096900.v1.1
prunus_persica	Prupe.8G141300_v2.0.a1 Prupe.8G141300_v2.0.a1 Prupe.8G141300_v2.0.a1
pyrus_communis	pycom05g09560
rosa_chinensis	RchiOBHm_Chr6g0253031 RchiOBHm_Chr6g0253191
rosa_laevigata	RLG00000015042
rosa_multiflora	Rmu_sc0002560.1_g000012 Rmu_sc0003855.1_g000010 Rmu_sc0003898.1_g000001
rosa_roxburghii	Rroxscaffold_7G00212180
rosa_rugosa	Rorug05G0542900
rosa_samantha	Rh6AG056900 Rh6BG051500 Rh6CG049300 Rh6DG045000
rosa_wichuraiana	Rw6G005200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1121
Acc65I	GGTACC	1 cut(s)	764
AccB1I	GGYRCC	2 cut(s)	764, 1363
AccB7I	CCANNNNNTGG	1 cut(s)	1393
AccII	CGCG	1 cut(s)	468
AciI	CCGC	4 cut(s)	278, 466, 468, 494
AclWI	GGATC	2 cut(s)	265, 278
AcoI	YGGCCR	1 cut(s)	1384
AcsI	RAATTY	3 cut(s)	417, 778, 1075
AdeI	CACNNNGTG	1 cut(s)	1393
AfaI	GTAC	2 cut(s)	661, 766
AfiI	CCNNNNNNNGG	6 cut(s)	160, 251, 296, 1330, 1393, 1447
AluBI	AGCT	9 cut(s)	41, 86, 212, 224, 229, 240, 425, 869, 1346
AluI	AGCT	9 cut(s)	41, 86, 212, 224, 229, 240, 425, 869, 1346
Alw21I	GWGCWC	1 cut(s)	1016
AlwI	GGATC	2 cut(s)	265, 278
AlwNI	CAGNNNCTG	2 cut(s)	44, 872
AoxI	GGCC	4 cut(s)	151, 287, 1384, 1493
ApeKI	GCWGC	5 cut(s)	41, 44, 472, 866, 1112
ApoI	RAATTY	3 cut(s)	417, 778, 1075
Asp718I	GGTACC	1 cut(s)	764
AspS9I	GGNCC	4 cut(s)	113, 152, 287, 1321
AsuHPI	GGTGA	3 cut(s)	17, 229, 1285
AvaII	GGWCC	2 cut(s)	113, 1321
BaeGI	GKGCMC	2 cut(s)	524, 1336
BamHI	GGATCC	1 cut(s)	270
BanI	GGYRCC	2 cut(s)	764, 1363
BarI	GAAGNNNNNNTAC	2 cut(s)	1335, 1367
Bbv12I	GWGCWC	1 cut(s)	1016
BbvI	GCAGC	5 cut(s)	28, 31, 459, 878, 1099
BccI	CCATC	6 cut(s)	400, 529, 793, 797, 940, 1323
BceAI	ACGGC	1 cut(s)	1399
BciVI	GTATCC	2 cut(s)	605, 800
BfaI	CTAG	3 cut(s)	555, 578, 789
BfmI	CTRYAG	2 cut(s)	720, 1089
BfuI	GTATCC	2 cut(s)	605, 800
BisI	GCNGC	6 cut(s)	42, 45, 279, 473, 867, 1113
BlpI	GCTNAGC	1 cut(s)	225
BlsI	GCNGC	6 cut(s)	43, 46, 280, 474, 868, 1114
Bme18I	GGWCC	2 cut(s)	113, 1321
BmgT120I	GGNCC	4 cut(s)	113, 152, 287, 1321
BmiI	GGNNCC	5 cut(s)	114, 272, 766, 772, 1365
BmrI	ACTGGG	2 cut(s)	350, 655
BmsI	GCATC	2 cut(s)	907, 1417
BmuI	ACTGGG	2 cut(s)	350, 655
BpmI	CTGGAG	2 cut(s)	165, 1044
Bpu1102I	GCTNAGC	1 cut(s)	225
BpuEI	CTTGAG	2 cut(s)	833, 1124
BsaJI	CCNNGG	1 cut(s)	466
BsaWI	WCCGGW	1 cut(s)	767
Bsc4I	CCNNNNNNNGG	6 cut(s)	160, 251, 296, 1330, 1393, 1447
Bse1I	ACTGG	4 cut(s)	21, 356, 650, 1027
Bse3DI	GCAATG	2 cut(s)	164, 882
BseDI	CCNNGG	1 cut(s)	466
BseGI	GGATG	3 cut(s)	831, 942, 1050
BseLI	CCNNNNNNNGG	6 cut(s)	160, 251, 296, 1330, 1393, 1447
BseMI	GCAATG	2 cut(s)	164, 882
BseMII	CTCAG	3 cut(s)	216, 1238, 1350
BseNI	ACTGG	4 cut(s)	21, 356, 650, 1027
BseRI	GAGGAG	1 cut(s)	162
BseSI	GKGCMC	2 cut(s)	524, 1336
BseXI	GCAGC	5 cut(s)	28, 31, 459, 878, 1099
Bsh1236I	CGCG	1 cut(s)	468
BshFI	GGCC	4 cut(s)	153, 289, 1386, 1495
BshNI	GGYRCC	2 cut(s)	764, 1363
BsiHKAI	GWGCWC	1 cut(s)	1016
BsiSI	CCGG	1 cut(s)	768
BslFI	GGGAC	1 cut(s)	27
BslI	CCNNNNNNNGG	6 cut(s)	160, 251, 296, 1330, 1393, 1447
BsmFI	GGGAC	1 cut(s)	27
BsmI	GAATGC	4 cut(s)	201, 382, 957, 1101
BsnI	GGCC	4 cut(s)	153, 289, 1386, 1495
Bsp1286I	GDGCHC	3 cut(s)	524, 1016, 1336
Bsp143I	GATC	2 cut(s)	270, 1457
Bsp1720I	GCTNAGC	1 cut(s)	225
BspACI	CCGC	4 cut(s)	278, 466, 468, 494
BspANI	GGCC	4 cut(s)	153, 289, 1386, 1495
BspCNI	CTCAG	3 cut(s)	217, 1239, 1351
BspFNI	CGCG	1 cut(s)	468
BspLI	GGNNCC	5 cut(s)	114, 272, 766, 772, 1365
BspPI	GGATC	2 cut(s)	265, 278
BspQI	GCTCTTC	1 cut(s)	714
BspT107I	GGYRCC	2 cut(s)	764, 1363
BsrDI	GCAATG	2 cut(s)	164, 882
BsrI	ACTGG	4 cut(s)	21, 356, 650, 1027
BssECI	CCNNGG	1 cut(s)	466
BssMI	GATC	2 cut(s)	270, 1457
Bst4CI	ACNGT	3 cut(s)	519, 1338, 1376
Bst6I	CTCTTC	2 cut(s)	3, 714
BstAPI	GCANNNNNTGC	1 cut(s)	872
BstC8I	GCNNGC	4 cut(s)	231, 470, 670, 1202
BstDEI	CTNAG	4 cut(s)	225, 981, 1247, 1359
BstDSI	CCRYGG	1 cut(s)	466
BstF5I	GGATG	3 cut(s)	831, 942, 1050
BstFNI	CGCG	1 cut(s)	468
BstKTI	GATC	2 cut(s)	273, 1460
BstMBI	GATC	2 cut(s)	270, 1457
BstMWI	GCNNNNNNNGC	3 cut(s)	230, 872, 1201
BstSFI	CTRYAG	2 cut(s)	720, 1089
BstSLI	GKGCMC	2 cut(s)	524, 1336
BstUI	CGCG	1 cut(s)	468
BstV1I	GCAGC	5 cut(s)	28, 31, 459, 878, 1099
BstX2I	RGATCY	1 cut(s)	270
BstXI	CCANNNNNNTGG	1 cut(s)	195
BstYI	RGATCY	1 cut(s)	270
BsuI	GTATCC	2 cut(s)	605, 800
BsuRI	GGCC	4 cut(s)	153, 289, 1386, 1495
BtgI	CCRYGG	1 cut(s)	466
BtsCI	GGATG	3 cut(s)	831, 942, 1050
BtsI	GCAGTG	2 cut(s)	578, 919
BtsIMutI	CAGTG	6 cut(s)	28, 515, 578, 919, 1020, 1356
Cac8I	GCNNGC	4 cut(s)	231, 470, 670, 1202
CaiI	CAGNNNCTG	2 cut(s)	44, 872
Cfr13I	GGNCC	4 cut(s)	113, 152, 287, 1321
Cfr42I	CCGCGG	1 cut(s)	469
Csp6I	GTAC	2 cut(s)	660, 765
CviAII	CATG	1 cut(s)	1313
CviQI	GTAC	2 cut(s)	660, 765
DdeI	CTNAG	4 cut(s)	225, 981, 1247, 1359
DpnI	GATC	2 cut(s)	272, 1459
DpnII	GATC	2 cut(s)	270, 1457
DraI	TTTAAA	1 cut(s)	592
DraIII	CACNNNGTG	1 cut(s)	1393
EaeI	YGGCCR	1 cut(s)	1384
Eam1104I	CTCTTC	2 cut(s)	3, 714
EarI	CTCTTC	2 cut(s)	3, 714
Eco47I	GGWCC	2 cut(s)	113, 1321
EcoO109I	RGGNCCY	2 cut(s)	113, 152
EcoRI	GAATTC	1 cut(s)	417
FaeI	CATG	1 cut(s)	1316
FaqI	GGGAC	1 cut(s)	27
FatI	CATG	1 cut(s)	1312
FauI	CCCGC	1 cut(s)	461
Fnu4HI	GCNGC	6 cut(s)	42, 45, 279, 473, 867, 1113
FokI	GGATG	3 cut(s)	838, 949, 1057
Fsp4HI	GCNGC	6 cut(s)	42, 45, 279, 473, 867, 1113
FspBI	CTAG	3 cut(s)	555, 578, 789
GluI	GCNGC	6 cut(s)	42, 45, 279, 473, 867, 1113
GsuI	CTGGAG	2 cut(s)	165, 1044
HaeIII	GGCC	4 cut(s)	153, 289, 1386, 1495
HapII	CCGG	1 cut(s)	768
Hin1II	CATG	1 cut(s)	1316
HincII	GTYRAC	1 cut(s)	66
HindII	GTYRAC	1 cut(s)	66
HindIII	AAGCTT	2 cut(s)	210, 238
HinfI	GANTC	8 cut(s)	131, 550, 634, 748, 859, 1026, 1427, 1478
HpaII	CCGG	1 cut(s)	768
HphI	GGTGA	3 cut(s)	17, 229, 1285
Hpy166II	GTNNAC	3 cut(s)	66, 586, 798
Hpy188I	TCNGA	6 cut(s)	90, 639, 960, 1248, 1381, 1450
Hpy188III	TCNNGA	7 cut(s)	206, 316, 547, 1055, 1103, 1412, 1421
Hpy8I	GTNNAC	3 cut(s)	66, 586, 798
HpyAV	CCTTC	3 cut(s)	1157, 1451, 1516
HpyCH4III	ACNGT	3 cut(s)	519, 1338, 1376
HpyCH4V	TGCA	9 cut(s)	475, 668, 815, 875, 1174, 1211, 1316, 1408, 1469
HpyF10VI	GCNNNNNNNGC	3 cut(s)	230, 872, 1201
HpyF3I	CTNAG	4 cut(s)	225, 981, 1247, 1359
Hsp92II	CATG	1 cut(s)	1316
KpnI	GGTACC	1 cut(s)	768
KspI	CCGCGG	1 cut(s)	469
Kzo9I	GATC	2 cut(s)	270, 1457
LguI	GCTCTTC	1 cut(s)	714
LmnI	GCTCC	2 cut(s)	198, 770
Lsp1109I	GCAGC	5 cut(s)	28, 31, 459, 878, 1099
LweI	GCATC	2 cut(s)	907, 1417
MaeI	CTAG	3 cut(s)	555, 578, 789
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	2 cut(s)	272, 1459
MboI	GATC	2 cut(s)	270, 1457
MboII	GAAGA	7 cut(s)	20, 701, 1024, 1249, 1422, 1473, 1511
MflI	RGATCY	1 cut(s)	270
MhlI	GDGCHC	3 cut(s)	524, 1016, 1336
MluCI	AATT	7 cut(s)	417, 460, 558, 640, 778, 1075, 1511
MlyI	GAGTC	1 cut(s)	1035
MmeI	TCCRAC	1 cut(s)	983
MseI	TTAA	5 cut(s)	399, 591, 776, 830, 1464
MspA1I	CMGCKG	3 cut(s)	41, 224, 468
MspI	CCGG	1 cut(s)	768
Mva1269I	GAATGC	4 cut(s)	201, 382, 957, 1101
MvnI	CGCG	1 cut(s)	468
MwoI	GCNNNNNNNGC	3 cut(s)	230, 872, 1201
NdeII	GATC	2 cut(s)	270, 1457
NlaIII	CATG	1 cut(s)	1316
NlaIV	GGNNCC	5 cut(s)	114, 272, 766, 772, 1365
NmuCI	GTSAC	1 cut(s)	217
PciSI	GCTCTTC	1 cut(s)	714
PctI	GAATGC	4 cut(s)	201, 382, 957, 1101
PfeI	GAWTC	7 cut(s)	131, 550, 634, 748, 859, 1427, 1478
PflMI	CCANNNNNTGG	1 cut(s)	1393
PkrI	GCNGC	6 cut(s)	43, 46, 280, 474, 868, 1114
PleI	GAGTC	1 cut(s)	1034
PpsI	GAGTC	1 cut(s)	1034
PpuMI	RGGWCCY	1 cut(s)	113
PsiI	TTATAA	1 cut(s)	1121
Psp5II	RGGWCCY	1 cut(s)	113
PspN4I	GGNNCC	5 cut(s)	114, 272, 766, 772, 1365
PspPI	GGNCC	4 cut(s)	113, 152, 287, 1321
PspPPI	RGGWCCY	1 cut(s)	113
PstNI	CAGNNNCTG	2 cut(s)	44, 872
PsuI	RGATCY	1 cut(s)	270
PvuII	CAGCTG	2 cut(s)	41, 224
RsaI	GTAC	2 cut(s)	661, 766
RsaNI	GTAC	2 cut(s)	660, 765
SacII	CCGCGG	1 cut(s)	469
SapI	GCTCTTC	1 cut(s)	714
SaqAI	TTAA	5 cut(s)	399, 591, 776, 830, 1464
SatI	GCNGC	6 cut(s)	42, 45, 279, 473, 867, 1113
Sau3AI	GATC	2 cut(s)	270, 1457
Sau96I	GGNCC	4 cut(s)	113, 152, 287, 1321
SchI	GAGTC	1 cut(s)	1035
SduI	GDGCHC	3 cut(s)	524, 1016, 1336
SfaNI	GCATC	2 cut(s)	907, 1417
SfcI	CTRYAG	2 cut(s)	720, 1089
Sfr303I	CCGCGG	1 cut(s)	469
SgrBI	CCGCGG	1 cut(s)	469
SinI	GGWCC	2 cut(s)	113, 1321
SmlI	CTYRAG	2 cut(s)	848, 1103
SmoI	CTYRAG	2 cut(s)	848, 1103
Sse9I	AATT	7 cut(s)	417, 460, 558, 640, 778, 1075, 1511
SsiI	CCGC	4 cut(s)	278, 466, 468, 494
SspMI	CTAG	3 cut(s)	555, 578, 789
TaaI	ACNGT	3 cut(s)	519, 1338, 1376
TaqI	TCGA	5 cut(s)	415, 548, 881, 897, 1484
TasI	AATT	7 cut(s)	417, 460, 558, 640, 778, 1075, 1511
TauI	GCSGC	1 cut(s)	281
TfiI	GAWTC	7 cut(s)	131, 550, 634, 748, 859, 1427, 1478
Tru1I	TTAA	5 cut(s)	399, 591, 776, 830, 1464
Tru9I	TTAA	5 cut(s)	399, 591, 776, 830, 1464
TscAI	CASTG	6 cut(s)	28, 522, 578, 919, 1027, 1363
TseFI	GTSAC	1 cut(s)	217
TseI	GCWGC	5 cut(s)	41, 44, 472, 866, 1112
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	4 cut(s)	375, 729, 1301, 1440
TspRI	CASTG	6 cut(s)	28, 522, 578, 919, 1027, 1363
Van91I	CCANNNNNTGG	1 cut(s)	1393
VpaK11BI	GGWCC	2 cut(s)	113, 1321
XapI	RAATTY	3 cut(s)	417, 778, 1075
XcmI	CCANNNNNNNNNTGG	1 cut(s)	792
XspI	CTAG	3 cut(s)	555, 578, 789

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.