Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011098

Physical Location & Seq

Genomic Coordinates Reverse (-)

8328482 .. 8330173

Gene Structure 1692 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22703

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1437 bp

ATGGGTGAACAGGGAATGGTCAGTGATGTCAAGGACACAGCTGCTTCCAAACCAAACCCAAAGTTGACACTTTTACCTCTTATAGCTTTAATTTTCTATGAGGTTTCGGGGGGTCCTTTTGGCGTTGAGGATTCAGTCAGGGCTGGAGGAGGCCCTCTTTTATCATTGCTTGGTTTCTTAGTGTTTCCCTTGTTTTGGAGCATTCCAGAAGCTTTGGTGACAGCTGAGCTTGCCACAAGCTTCCCTGAAAATGGTGGATATGTGCTTTGGATATCAGCGGCTTTCGGGCCATTTTGGGGATTCCAAGAGGGGTTTTGGAAATGGTTTAGTGGGGTTATGGACAATGCTCTTTACCCTGTCCTATTCTTGGATTACTTGAAGCGTTCATTTCCCATATTTAATCGGATGGTTGCTCGAATTCCAGCTCTTTTGGGAATAACATTCTCATTGACTTACTTGAATTACCGCGGACTGCATATTGTCGGGTTCTCTGCTGTTTCACTTGCTGTTTTCTCACTTTGCCCATTTATCGTGATGGCTATTCTTTCTATTCCTAGAATTAGGTTCAAGCAGTGGCTAGTTGTGGACTTTAAGAAGGTTGAAAATCCAAGCAAGACATTTCCAAAGGCGCTCCTTGGGGCTGTAGTTGTGGTGGTTTGTTCATATTTGATTCCACTTCTTGCTGGTACAGAAGCCTTAAACTCTCCATCTAGCGAGTGGACTGATGGGTACTTTGCAGAAGTTGGGATGTTAATAGGTGGCGTTTGGCTCAAGTGTGATGCCTTTCAACTTCTTGGGATGAGCGAGATGGGAATGCTTCCGGCTGTATTTGCTTCAAGCTATTTTCCTTTTACTCCCATTGGCCCTCAAGAAAGGACCTTCAAAATTGAGTTTCATATCTGGGAACTGAAATTATGGAACACCTACCATAAGCATACCGGAGTCATCTTCTTGTCGTGGATGAGTTTTCAGGAAATCTTGGAGTTTTTGAATTTCTTATACGCTATAGGAATGCTTCTTGAGTTTGCTGCTTTTATAAAATTGAGAATAAAGAAGCCAGACCTTCACAGACCTTACCGAGTTCCCTTCCAGACATCTGGGGCAATAATGATTTGCCTGCCTCCCGCATTGTTGCTTATTCTCGTTATGTGCTTGGCTTCTCTGAGGACAATCTTAGTAAGTGGTGTGGTGATTATAGTGGGTCTTTTGTTATACCCTCTTTTAGTTCATGCAAAGGACCATGGATGGGCACAGTTGGATGCAGAACTACCCACTGAGGCTCCCAAGAATTGTTCGGATGGCCACTCCGTGGTTTCACAGTTGCATCAAGAAGTTCAAGATGAATCTTCTGTTAGCCTTCTCTCAGACTTGCCATCTGTTAAAGCAGAACCAGAATATTCGACAATAAGGCCAGAAGAAGCCTTCAAATTAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015179 GO:0015203 GO:0015291 GO:0015297 GO:0015318 GO:0015711 GO:0015807 GO:0015846 GO:0015849 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1902047 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2

Protein Analysis

478

Amino Acids

53.18

Weight (kDa)

5.78

Isoelectric Point (pI)

38.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_permease_2	PF13520	23 - 188	2.9e-13	Amino acid permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19553
fragaria_vesca	FvH4_2g03970
malus_domestica	MD05G1096900.v1.1
prunus_persica	Prupe.8G141300_v2.0.a1 Prupe.8G141300_v2.0.a1 Prupe.8G141300_v2.0.a1
pyrus_communis	pycom05g09560
rosa_chinensis	RchiOBHm_Chr6g0253031 RchiOBHm_Chr6g0253191
rosa_laevigata	RLG00000015042
rosa_multiflora	Rmu_sc0002560.1_g000012 Rmu_sc0003855.1_g000010 Rmu_sc0003898.1_g000001
rosa_roxburghii	Rroxscaffold_7G00212180
rosa_rugosa	Rorug05G0542900
rosa_samantha	Rh6AG056900 Rh6BG051500 Rh6CG049300 Rh6DG045000
rosa_wichuraiana	Rw6G005200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1037
AccB7I	CCANNNNNTGG	1 cut(s)	1309
AccII	CGCG	1 cut(s)	468
AciI	CCGC	4 cut(s)	278, 466, 468, 1125
AcoI	YGGCCR	1 cut(s)	1300
AcsI	RAATTY	2 cut(s)	417, 991
AdeI	CACNNNGTG	1 cut(s)	1309
AfaI	GTAC	2 cut(s)	688, 731
AfiI	CCNNNNNNNGG	6 cut(s)	195, 251, 296, 367, 1246, 1309
AluBI	AGCT	8 cut(s)	41, 86, 212, 224, 229, 240, 425, 840
AluI	AGCT	8 cut(s)	41, 86, 212, 224, 229, 240, 425, 840
AoxI	GGCC	5 cut(s)	151, 287, 862, 1300, 1409
ApeKI	GCWGC	2 cut(s)	41, 1028
ApoI	RAATTY	2 cut(s)	417, 991
AspLEI	GCGC	1 cut(s)	631
AspS9I	GGNCC	6 cut(s)	113, 152, 287, 863, 876, 1237
AsuHPI	GGTGA	3 cut(s)	17, 229, 1201
AvaII	GGWCC	3 cut(s)	113, 876, 1237
BaeGI	GKGCMC	1 cut(s)	1252
BalI	TGGCCA	1 cut(s)	1302
BbvI	GCAGC	2 cut(s)	28, 1015
BccI	CCATC	8 cut(s)	400, 529, 715, 719, 802, 1239, 1292, 1381
BfaI	CTAG	3 cut(s)	555, 578, 711
BfmI	CTRYAG	2 cut(s)	642, 1005
BfoI	RGCGCY	1 cut(s)	632
BisI	GCNGC	3 cut(s)	42, 279, 1029
BlpI	GCTNAGC	1 cut(s)	225
BlsI	GCNGC	3 cut(s)	43, 280, 1030
Bme18I	GGWCC	3 cut(s)	113, 876, 1237
BmgT120I	GGNCC	6 cut(s)	113, 152, 287, 863, 876, 1237
BmiI	GGNNCC	2 cut(s)	114, 1281
BmsI	GCATC	3 cut(s)	769, 1249, 1333
BpmI	CTGGAG	1 cut(s)	165
Bpu1102I	GCTNAGC	1 cut(s)	225
BpuEI	CTTGAG	3 cut(s)	755, 852, 1040
BsaJI	CCNNGG	4 cut(s)	466, 634, 1240, 1308
BsaWI	WCCGGW	1 cut(s)	938
BsaXI	ACNNNNNCTCC	2 cut(s)	1264, 1294
Bsc4I	CCNNNNNNNGG	6 cut(s)	195, 251, 296, 367, 1246, 1309
Bse3DI	GCAATG	1 cut(s)	164
BseDI	CCNNGG	4 cut(s)	466, 634, 1240, 1308
BseGI	GGATG	7 cut(s)	411, 753, 804, 966, 1250, 1264, 1303
BseLI	CCNNNNNNNGG	6 cut(s)	195, 251, 296, 367, 1246, 1309
BseMI	GCAATG	1 cut(s)	164
BseMII	CTCAG	4 cut(s)	216, 1154, 1266, 1377
BseRI	GAGGAG	1 cut(s)	162
BseSI	GKGCMC	1 cut(s)	1252
BseXI	GCAGC	2 cut(s)	28, 1015
Bsh1236I	CGCG	1 cut(s)	468
BshFI	GGCC	5 cut(s)	153, 289, 864, 1302, 1411
BsiSI	CCGG	2 cut(s)	821, 939
BslI	CCNNNNNNNGG	6 cut(s)	195, 251, 296, 367, 1246, 1309
BsmI	GAATGC	3 cut(s)	201, 819, 1017
BsnI	GGCC	5 cut(s)	153, 289, 864, 1302, 1411
Bsp1286I	GDGCHC	1 cut(s)	1252
Bsp1720I	GCTNAGC	1 cut(s)	225
Bsp19I	CCATGG	1 cut(s)	1240
BspACI	CCGC	4 cut(s)	278, 466, 468, 1125
BspANI	GGCC	5 cut(s)	153, 289, 864, 1302, 1411
BspCNI	CTCAG	4 cut(s)	217, 1155, 1267, 1376
BspFNI	CGCG	1 cut(s)	468
BspLI	GGNNCC	2 cut(s)	114, 1281
BsrDI	GCAATG	1 cut(s)	164
BssECI	CCNNGG	4 cut(s)	466, 634, 1240, 1308
BssT1I	CCWWGG	2 cut(s)	634, 1240
Bst4CI	ACNGT	2 cut(s)	1254, 1320
BstC8I	GCNNGC	2 cut(s)	231, 1118
BstDEI	CTNAG	6 cut(s)	178, 225, 1163, 1174, 1275, 1363
BstDSI	CCRYGG	3 cut(s)	466, 1240, 1308
BstF5I	GGATG	7 cut(s)	411, 753, 804, 966, 1250, 1264, 1303
BstFNI	CGCG	1 cut(s)	468
BstH2I	RGCGCY	1 cut(s)	632
BstHHI	GCGC	1 cut(s)	631
BstMWI	GCNNNNNNNGC	2 cut(s)	230, 830
BstSFI	CTRYAG	2 cut(s)	642, 1005
BstSLI	GKGCMC	1 cut(s)	1252
BstUI	CGCG	1 cut(s)	468
BstV1I	GCAGC	2 cut(s)	28, 1015
BstXI	CCANNNNNNTGG	1 cut(s)	1097
BsuRI	GGCC	5 cut(s)	153, 289, 864, 1302, 1411
BtgI	CCRYGG	3 cut(s)	466, 1240, 1308
BtsCI	GGATG	7 cut(s)	411, 753, 804, 966, 1250, 1264, 1303
BtsI	GCAGTG	1 cut(s)	578
BtsIMutI	CAGTG	3 cut(s)	28, 578, 1272
Cac8I	GCNNGC	2 cut(s)	231, 1118
CfoI	GCGC	1 cut(s)	631
Cfr13I	GGNCC	6 cut(s)	113, 152, 287, 863, 876, 1237
Cfr42I	CCGCGG	1 cut(s)	469
Csp6I	GTAC	2 cut(s)	687, 730
CviAII	CATG	2 cut(s)	1229, 1241
CviQI	GTAC	2 cut(s)	687, 730
DdeI	CTNAG	6 cut(s)	178, 225, 1163, 1174, 1275, 1363
DraIII	CACNNNGTG	1 cut(s)	1309
EaeI	YGGCCR	1 cut(s)	1300
Eco130I	CCWWGG	2 cut(s)	634, 1240
Eco32I	GATATC	1 cut(s)	273
Eco47I	GGWCC	3 cut(s)	113, 876, 1237
EcoO109I	RGGNCCY	3 cut(s)	113, 152, 876
EcoRI	GAATTC	1 cut(s)	417
EcoRV	GATATC	1 cut(s)	273
EcoT14I	CCWWGG	2 cut(s)	634, 1240
ErhI	CCWWGG	2 cut(s)	634, 1240
FaeI	CATG	2 cut(s)	1232, 1244
FatI	CATG	2 cut(s)	1228, 1240
FauI	CCCGC	1 cut(s)	1132
Fnu4HI	GCNGC	3 cut(s)	42, 279, 1029
FokI	GGATG	7 cut(s)	418, 760, 811, 973, 1257, 1271, 1310
Fsp4HI	GCNGC	3 cut(s)	42, 279, 1029
FspBI	CTAG	3 cut(s)	555, 578, 711
GlaI	GCGC	1 cut(s)	630
GluI	GCNGC	3 cut(s)	42, 279, 1029
GsuI	CTGGAG	1 cut(s)	165
HaeII	RGCGCY	1 cut(s)	632
HaeIII	GGCC	5 cut(s)	153, 289, 864, 1302, 1411
HapII	CCGG	2 cut(s)	821, 939
HhaI	GCGC	1 cut(s)	631
Hin1II	CATG	2 cut(s)	1232, 1244
Hin6I	GCGC	1 cut(s)	629
HinP1I	GCGC	1 cut(s)	629
HincII	GTYRAC	1 cut(s)	66
HindII	GTYRAC	1 cut(s)	66
HindIII	AAGCTT	2 cut(s)	210, 238
HinfI	GANTC	5 cut(s)	131, 300, 670, 942, 1343
HpaII	CCGG	2 cut(s)	821, 939
HphI	GGTGA	3 cut(s)	17, 229, 1201
Hpy166II	GTNNAC	4 cut(s)	8, 66, 586, 720
Hpy188I	TCNGA	4 cut(s)	405, 1164, 1297, 1366
Hpy188III	TCNNGA	8 cut(s)	206, 532, 869, 971, 1019, 1090, 1328, 1337
Hpy8I	GTNNAC	4 cut(s)	8, 66, 586, 720
HpyAV	CCTTC	6 cut(s)	589, 889, 1073, 1096, 1367, 1432
HpyCH4III	ACNGT	2 cut(s)	1254, 1320
HpyCH4V	TGCA	5 cut(s)	475, 737, 1232, 1262, 1324
HpyF10VI	GCNNNNNNNGC	2 cut(s)	230, 830
HpyF3I	CTNAG	6 cut(s)	178, 225, 1163, 1174, 1275, 1363
Hsp92II	CATG	2 cut(s)	1232, 1244
HspAI	GCGC	1 cut(s)	629
KspI	CCGCGG	1 cut(s)	469
LmnI	GCTCC	3 cut(s)	198, 636, 1285
Lsp1109I	GCAGC	2 cut(s)	28, 1015
LweI	GCATC	3 cut(s)	769, 1249, 1333
MaeI	CTAG	3 cut(s)	555, 578, 711
MaeIII	GTNAC	1 cut(s)	217
MboII	GAAGA	3 cut(s)	940, 1338, 1427
MhlI	GDGCHC	1 cut(s)	1252
MlsI	TGGCCA	1 cut(s)	1302
MluNI	TGGCCA	1 cut(s)	1302
MlyI	GAGTC	1 cut(s)	951
MmeI	TCCRAC	1 cut(s)	1236
Mox20I	TGGCCA	1 cut(s)	1302
MscI	TGGCCA	1 cut(s)	1302
MseI	TTAA	6 cut(s)	89, 399, 591, 698, 752, 1380
Msp20I	TGGCCA	1 cut(s)	1302
MspA1I	CMGCKG	4 cut(s)	41, 224, 278, 468
MspI	CCGG	2 cut(s)	821, 939
Mva1269I	GAATGC	3 cut(s)	201, 819, 1017
MvnI	CGCG	1 cut(s)	468
MwoI	GCNNNNNNNGC	2 cut(s)	230, 830
NcoI	CCATGG	1 cut(s)	1240
NlaIII	CATG	2 cut(s)	1232, 1244
NlaIV	GGNNCC	2 cut(s)	114, 1281
NmuCI	GTSAC	1 cut(s)	217
PctI	GAATGC	3 cut(s)	201, 819, 1017
PfeI	GAWTC	4 cut(s)	131, 300, 670, 1343
PflMI	CCANNNNNTGG	1 cut(s)	1309
PkrI	GCNGC	3 cut(s)	43, 280, 1030
PleI	GAGTC	1 cut(s)	950
PpsI	GAGTC	1 cut(s)	950
PpuMI	RGGWCCY	2 cut(s)	113, 876
PsiI	TTATAA	1 cut(s)	1037
Psp5II	RGGWCCY	2 cut(s)	113, 876
PspN4I	GGNNCC	2 cut(s)	114, 1281
PspPI	GGNCC	6 cut(s)	113, 152, 287, 863, 876, 1237
PspPPI	RGGWCCY	2 cut(s)	113, 876
PvuII	CAGCTG	2 cut(s)	41, 224
RsaI	GTAC	2 cut(s)	688, 731
RsaNI	GTAC	2 cut(s)	687, 730
SacII	CCGCGG	1 cut(s)	469
SaqAI	TTAA	6 cut(s)	89, 399, 591, 698, 752, 1380
SatI	GCNGC	3 cut(s)	42, 279, 1029
Sau96I	GGNCC	6 cut(s)	113, 152, 287, 863, 876, 1237
SchI	GAGTC	1 cut(s)	951
SduI	GDGCHC	1 cut(s)	1252
SfaNI	GCATC	3 cut(s)	769, 1249, 1333
SfcI	CTRYAG	2 cut(s)	642, 1005
Sfr303I	CCGCGG	1 cut(s)	469
SgrBI	CCGCGG	1 cut(s)	469
SinI	GGWCC	3 cut(s)	113, 876, 1237
SmlI	CTYRAG	3 cut(s)	770, 867, 1019
SmoI	CTYRAG	3 cut(s)	770, 867, 1019
SsiI	CCGC	4 cut(s)	278, 466, 468, 1125
SspI	AATATT	1 cut(s)	1397
SspMI	CTAG	3 cut(s)	555, 578, 711
StyI	CCWWGG	2 cut(s)	634, 1240
TaaI	ACNGT	2 cut(s)	1254, 1320
TaqI	TCGA	2 cut(s)	415, 1400
TauI	GCSGC	1 cut(s)	281
TfiI	GAWTC	4 cut(s)	131, 300, 670, 1343
Tru1I	TTAA	6 cut(s)	89, 399, 591, 698, 752, 1380
Tru9I	TTAA	6 cut(s)	89, 399, 591, 698, 752, 1380
TscAI	CASTG	3 cut(s)	28, 578, 1279
TseFI	GTSAC	1 cut(s)	217
TseI	GCWGC	2 cut(s)	41, 1028
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	5 cut(s)	375, 651, 884, 1217, 1356
TspGWI	ACGGA	1 cut(s)	1297
TspRI	CASTG	3 cut(s)	28, 578, 1279
Van91I	CCANNNNNTGG	1 cut(s)	1309
VpaK11BI	GGWCC	3 cut(s)	113, 876, 1237
XapI	RAATTY	2 cut(s)	417, 991
XcmI	CCANNNNNNNNNTGG	1 cut(s)	714
XspI	CTAG	3 cut(s)	555, 578, 711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.