Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0011098

Physical Location & Seq

Genomic Coordinates Forward (+)

62630896 .. 62633461

Gene Structure 2566 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00212180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGGACAATGCTTTATACCCAGTTTTGTTCCTGGATTACTTGAAGCATACATTTCCCATATTTAACCAGATGGTTGCTAGAATTCCAGCTCTTTTGGGAATAACATTCTCATTGACTTACTTGAACTACCGCGGACTGCATATTGTTGGGTTCTCTGCTGTTTCACTTGCTGTTTTCTCACTTTGCCCATTTGTGGTGATGGCTGTTCTTTCAATTCCTAGAATTAGAGTCAAGCAGTGGCTAGTTGTGGACTTTAAGAAGGTGGAGTGGAGGGGATATTTTAATAGTATGTTTTGGAATCTGAATTACTGGGATAAGGCAAGTACCCTTGCAGGGGAGGTTGAAAATCCAAGCAAGACATTTCCAAAGGCGCTTCTTGGGGCTGTAGTTGTGGTGGTTTGTTCATATTTGATTCCACTTCTTGCTGGTACGGGAGCCTTAAACTCTCCATCTAGCGAGTGGACTGATGGGTACTTTGCAGAAGTTGGGATGTTAATAGGTGGCGTTTGGCTAAAGTGGTGGATTCAAGCAGCTTCTGCAATGTCTAACTTGGGGTTGTTTGAAGCAGAAATGAGCAGTGATGCCTTTCAACTTCTAGGGATGAGCGAGATGGGAATGCTTCCGGCTATATTTGCTTCAAGGTCCAAGTATGGAACACCTACCATAAGCATTTTGTGCTCTGCCACTGGAGTCATCTTCTTGTCGTGGATGAGTTTTCAGGAAATCTTGGAGTTTTTGAATTTCTTATACGCTATAGGAATGCTTCTTGAGTTTGTTGCTTTTATAAAATTGAGAATAAAGAAGCCAGACCTTCACAGACCTTACCGAGTTCCCTTCCAGACATTTGGGGCAATAATGCTTTGCCTGCCTCCTGCATTGTTGCTTATTCTCGTTATGTGCTTGGCTTCTCTGAGGACATTCTTAGTAAGTGGTGTGGTGATTATAGTGGGGCTTTTGTTATACCCTCTTTTAGTTCATGCAAAGGACCATGGATGGGCACAGTTCGATGCAGAACTACCCACTGAGGCTCCCAAGAATTGTTCGGATGGCCACTCCATGGTTTCACAGTTGCATCAAGAAGTTCAAGATGAATCTTCTGTTAGCCTTCTCTCAGACTTGCCATCTGTTAATGCAGAACAAGAATCTTCGACAATTAGGCCAGAAGAAGCCTTCAAATTAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015179 GO:0015203 GO:0015291 GO:0015297 GO:0015318 GO:0015711 GO:0015807 GO:0015846 GO:0015849 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1902047 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2

Protein Analysis

394

Amino Acids

43.89

Weight (kDa)

5.7

Isoelectric Point (pI)

35.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_permease	PF00324	108 - 304	4.6e-10	Amino acid permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19553
fragaria_vesca	FvH4_2g03970
malus_domestica	MD05G1096900.v1.1
prunus_persica	Prupe.8G141300_v2.0.a1 Prupe.8G141300_v2.0.a1 Prupe.8G141300_v2.0.a1
pyrus_communis	pycom05g09560
rosa_chinensis	RchiOBHm_Chr6g0253031 RchiOBHm_Chr6g0253191
rosa_laevigata	RLG00000015042
rosa_multiflora	Rmu_sc0002560.1_g000012 Rmu_sc0003855.1_g000010 Rmu_sc0003898.1_g000001
rosa_roxburghii	Rroxscaffold_7G00212180
rosa_rugosa	Rorug05G0542900
rosa_samantha	Rh6AG056900 Rh6BG051500 Rh6CG049300 Rh6DG045000
rosa_wichuraiana	Rw6G005200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	785
AccB7I	CCANNNNNTGG	1 cut(s)	1057
AccII	CGCG	1 cut(s)	132
AciI	CCGC	2 cut(s)	130, 132
AcoI	YGGCCR	1 cut(s)	1048
AcsI	RAATTY	2 cut(s)	81, 739
AfaI	GTAC	3 cut(s)	325, 430, 473
AfiI	CCNNNNNNNGG	5 cut(s)	193, 333, 334, 994, 1057
AjnI	CCWGG	1 cut(s)	30
AluBI	AGCT	2 cut(s)	89, 533
AluI	AGCT	2 cut(s)	89, 533
Alw21I	GWGCWC	1 cut(s)	680
AlwNI	CAGNNNCTG	1 cut(s)	536
AoxI	GGCC	2 cut(s)	1048, 1157
ApeKI	GCWGC	1 cut(s)	530
ApoI	RAATTY	2 cut(s)	81, 739
AspLEI	GCGC	1 cut(s)	373
AspS9I	GGNCC	2 cut(s)	642, 985
AsuHPI	GGTGA	2 cut(s)	208, 949
AvaII	GGWCC	2 cut(s)	642, 985
BaeGI	GKGCMC	1 cut(s)	1000
BalI	TGGCCA	1 cut(s)	1050
Bbv12I	GWGCWC	1 cut(s)	680
BbvI	GCAGC	1 cut(s)	542
BccI	CCATC	8 cut(s)	64, 193, 457, 461, 604, 987, 1040, 1129
BciT130I	CCWGG	1 cut(s)	32
BfaI	CTAG	5 cut(s)	78, 219, 242, 453, 596
BfmI	CTRYAG	2 cut(s)	384, 753
BfoI	RGCGCY	1 cut(s)	374
BisI	GCNGC	1 cut(s)	531
BlsI	GCNGC	1 cut(s)	532
Bme1390I	CCNGG	1 cut(s)	32
Bme18I	GGWCC	2 cut(s)	642, 985
BmgT120I	GGNCC	2 cut(s)	642, 985
BmiI	GGNNCC	2 cut(s)	436, 1029
BmrFI	CCNGG	1 cut(s)	32
BmrI	ACTGGG	2 cut(s)	14, 319
BmsI	GCATC	3 cut(s)	571, 997, 1081
BmuI	ACTGGG	2 cut(s)	14, 319
BpmI	CTGGAG	1 cut(s)	708
BpuEI	CTTGAG	1 cut(s)	788
BsaJI	CCNNGG	3 cut(s)	130, 988, 1056
BsaXI	ACNNNNNCTCC	2 cut(s)	1012, 1042
Bsc4I	CCNNNNNNNGG	5 cut(s)	193, 333, 334, 994, 1057
Bse1I	ACTGG	3 cut(s)	20, 314, 691
Bse3DI	GCAATG	1 cut(s)	546
BseBI	CCWGG	1 cut(s)	32
BseDI	CCNNGG	3 cut(s)	130, 988, 1056
BseGI	GGATG	5 cut(s)	495, 606, 714, 998, 1051
BseLI	CCNNNNNNNGG	5 cut(s)	193, 333, 334, 994, 1057
BseMI	GCAATG	1 cut(s)	546
BseMII	CTCAG	3 cut(s)	902, 1014, 1125
BseNI	ACTGG	3 cut(s)	20, 314, 691
BseSI	GKGCMC	1 cut(s)	1000
BseXI	GCAGC	1 cut(s)	542
Bsh1236I	CGCG	1 cut(s)	132
BshFI	GGCC	2 cut(s)	1050, 1159
BsiHKAI	GWGCWC	1 cut(s)	680
BsiSI	CCGG	1 cut(s)	623
BslI	CCNNNNNNNGG	5 cut(s)	193, 333, 334, 994, 1057
BsmI	GAATGC	2 cut(s)	621, 765
BsnI	GGCC	2 cut(s)	1050, 1159
Bsp1286I	GDGCHC	2 cut(s)	680, 1000
Bsp19I	CCATGG	2 cut(s)	988, 1056
BspACI	CCGC	2 cut(s)	130, 132
BspANI	GGCC	2 cut(s)	1050, 1159
BspCNI	CTCAG	3 cut(s)	903, 1015, 1124
BspFNI	CGCG	1 cut(s)	132
BspLI	GGNNCC	2 cut(s)	436, 1029
BsrDI	GCAATG	1 cut(s)	546
BsrI	ACTGG	3 cut(s)	20, 314, 691
BssECI	CCNNGG	3 cut(s)	130, 988, 1056
BssT1I	CCWWGG	2 cut(s)	988, 1056
Bst2UI	CCWGG	1 cut(s)	32
Bst4CI	ACNGT	2 cut(s)	1002, 1068
BstAPI	GCANNNNNTGC	2 cut(s)	536, 675
BstC8I	GCNNGC	1 cut(s)	866
BstDEI	CTNAG	4 cut(s)	911, 922, 1023, 1111
BstDSI	CCRYGG	3 cut(s)	130, 988, 1056
BstF5I	GGATG	5 cut(s)	495, 606, 714, 998, 1051
BstFNI	CGCG	1 cut(s)	132
BstH2I	RGCGCY	1 cut(s)	374
BstHHI	GCGC	1 cut(s)	373
BstMWI	GCNNNNNNNGC	4 cut(s)	536, 632, 675, 865
BstNI	CCWGG	1 cut(s)	32
BstSCI	CCNGG	1 cut(s)	30
BstSFI	CTRYAG	2 cut(s)	384, 753
BstSLI	GKGCMC	1 cut(s)	1000
BstUI	CGCG	1 cut(s)	132
BstV1I	GCAGC	1 cut(s)	542
BstXI	CCANNNNNNTGG	1 cut(s)	845
BsuRI	GGCC	2 cut(s)	1050, 1159
BtgI	CCRYGG	3 cut(s)	130, 988, 1056
BtsCI	GGATG	5 cut(s)	495, 606, 714, 998, 1051
BtsI	GCAGTG	2 cut(s)	242, 583
BtsIMutI	CAGTG	4 cut(s)	242, 583, 684, 1020
Cac8I	GCNNGC	1 cut(s)	866
CaiI	CAGNNNCTG	1 cut(s)	536
CfoI	GCGC	1 cut(s)	373
Cfr13I	GGNCC	2 cut(s)	642, 985
Cfr42I	CCGCGG	1 cut(s)	133
Csp6I	GTAC	3 cut(s)	324, 429, 472
CviAII	CATG	3 cut(s)	977, 989, 1057
CviQI	GTAC	3 cut(s)	324, 429, 472
DdeI	CTNAG	4 cut(s)	911, 922, 1023, 1111
EaeI	YGGCCR	1 cut(s)	1048
Eco130I	CCWWGG	2 cut(s)	988, 1056
Eco47I	GGWCC	2 cut(s)	642, 985
EcoRI	GAATTC	1 cut(s)	81
EcoRII	CCWGG	1 cut(s)	30
EcoT14I	CCWWGG	2 cut(s)	988, 1056
ErhI	CCWWGG	2 cut(s)	988, 1056
FaeI	CATG	3 cut(s)	980, 992, 1060
FatI	CATG	3 cut(s)	976, 988, 1056
Fnu4HI	GCNGC	1 cut(s)	531
FokI	GGATG	5 cut(s)	502, 613, 721, 1005, 1058
Fsp4HI	GCNGC	1 cut(s)	531
FspBI	CTAG	5 cut(s)	78, 219, 242, 453, 596
GlaI	GCGC	1 cut(s)	372
GluI	GCNGC	1 cut(s)	531
GsuI	CTGGAG	1 cut(s)	708
HaeII	RGCGCY	1 cut(s)	374
HaeIII	GGCC	2 cut(s)	1050, 1159
HapII	CCGG	1 cut(s)	623
HhaI	GCGC	1 cut(s)	373
Hin1II	CATG	3 cut(s)	980, 992, 1060
Hin6I	GCGC	1 cut(s)	371
HinP1I	GCGC	1 cut(s)	371
HinfI	GANTC	7 cut(s)	228, 298, 412, 523, 690, 1091, 1142
HpaII	CCGG	1 cut(s)	623
HphI	GGTGA	2 cut(s)	208, 949
Hpy166II	GTNNAC	2 cut(s)	250, 462
Hpy188I	TCNGA	4 cut(s)	303, 912, 1045, 1114
Hpy188III	TCNNGA	5 cut(s)	719, 767, 838, 1076, 1085
Hpy8I	GTNNAC	2 cut(s)	250, 462
HpyAV	CCTTC	5 cut(s)	253, 821, 844, 1115, 1180
HpyCH4III	ACNGT	2 cut(s)	1002, 1068
HpyCH4V	TGCA	9 cut(s)	139, 332, 479, 539, 875, 980, 1010, 1072, 1133
HpyF10VI	GCNNNNNNNGC	4 cut(s)	536, 632, 675, 865
HpyF3I	CTNAG	4 cut(s)	911, 922, 1023, 1111
Hsp92II	CATG	3 cut(s)	980, 992, 1060
HspAI	GCGC	1 cut(s)	371
KspI	CCGCGG	1 cut(s)	133
LmnI	GCTCC	2 cut(s)	434, 1033
Lsp1109I	GCAGC	1 cut(s)	542
LweI	GCATC	3 cut(s)	571, 997, 1081
MaeI	CTAG	5 cut(s)	78, 219, 242, 453, 596
MboII	GAAGA	4 cut(s)	688, 1086, 1137, 1175
MhlI	GDGCHC	2 cut(s)	680, 1000
MlsI	TGGCCA	1 cut(s)	1050
MluCI	AATT	9 cut(s)	81, 213, 222, 304, 739, 788, 1036, 1152, 1175
MluNI	TGGCCA	1 cut(s)	1050
MlyI	GAGTC	2 cut(s)	237, 699
MnlI	CCTC	6 cut(s)	264, 331, 879, 906, 975, 1018
Mox20I	TGGCCA	1 cut(s)	1050
MscI	TGGCCA	1 cut(s)	1050
MseI	TTAA	6 cut(s)	63, 255, 282, 440, 494, 1128
Msp20I	TGGCCA	1 cut(s)	1050
MspA1I	CMGCKG	1 cut(s)	132
MspI	CCGG	1 cut(s)	623
MspR9I	CCNGG	1 cut(s)	32
Mva1269I	GAATGC	2 cut(s)	621, 765
MvaI	CCWGG	1 cut(s)	32
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	4 cut(s)	536, 632, 675, 865
NcoI	CCATGG	2 cut(s)	988, 1056
NlaIII	CATG	3 cut(s)	980, 992, 1060
NlaIV	GGNNCC	2 cut(s)	436, 1029
PctI	GAATGC	2 cut(s)	621, 765
PfeI	GAWTC	5 cut(s)	298, 412, 523, 1091, 1142
PflMI	CCANNNNNTGG	1 cut(s)	1057
PfoI	TCCNGGA	1 cut(s)	30
PkrI	GCNGC	1 cut(s)	532
PleI	GAGTC	2 cut(s)	236, 698
PpsI	GAGTC	2 cut(s)	236, 698
PsiI	TTATAA	1 cut(s)	785
Psp6I	CCWGG	1 cut(s)	30
PspGI	CCWGG	1 cut(s)	30
PspN4I	GGNNCC	2 cut(s)	436, 1029
PspPI	GGNCC	2 cut(s)	642, 985
PstNI	CAGNNNCTG	1 cut(s)	536
RsaI	GTAC	3 cut(s)	325, 430, 473
RsaNI	GTAC	3 cut(s)	324, 429, 472
SacII	CCGCGG	1 cut(s)	133
SaqAI	TTAA	6 cut(s)	63, 255, 282, 440, 494, 1128
SatI	GCNGC	1 cut(s)	531
Sau96I	GGNCC	2 cut(s)	642, 985
SchI	GAGTC	2 cut(s)	237, 699
ScrFI	CCNGG	1 cut(s)	32
SduI	GDGCHC	2 cut(s)	680, 1000
SetI	ASST	9 cut(s)	91, 264, 342, 502, 535, 644, 661, 813, 823
SfaNI	GCATC	3 cut(s)	571, 997, 1081
SfcI	CTRYAG	2 cut(s)	384, 753
Sfr303I	CCGCGG	1 cut(s)	133
SgrBI	CCGCGG	1 cut(s)	133
SinI	GGWCC	2 cut(s)	642, 985
SmlI	CTYRAG	1 cut(s)	767
SmoI	CTYRAG	1 cut(s)	767
Sse9I	AATT	9 cut(s)	81, 213, 222, 304, 739, 788, 1036, 1152, 1175
SsiI	CCGC	2 cut(s)	130, 132
SspMI	CTAG	5 cut(s)	78, 219, 242, 453, 596
StyD4I	CCNGG	1 cut(s)	30
StyI	CCWWGG	2 cut(s)	988, 1056
TaaI	ACNGT	2 cut(s)	1002, 1068
TaqI	TCGA	2 cut(s)	1005, 1148
TasI	AATT	9 cut(s)	81, 213, 222, 304, 739, 788, 1036, 1152, 1175
TfiI	GAWTC	5 cut(s)	298, 412, 523, 1091, 1142
Tru1I	TTAA	6 cut(s)	63, 255, 282, 440, 494, 1128
Tru9I	TTAA	6 cut(s)	63, 255, 282, 440, 494, 1128
TscAI	CASTG	4 cut(s)	242, 583, 691, 1027
TseI	GCWGC	1 cut(s)	530
TspDTI	ATGAA	3 cut(s)	393, 965, 1104
TspRI	CASTG	4 cut(s)	242, 583, 691, 1027
Van91I	CCANNNNNTGG	1 cut(s)	1057
VpaK11BI	GGWCC	2 cut(s)	642, 985
XapI	RAATTY	2 cut(s)	81, 739
XcmI	CCANNNNNNNNNTGG	1 cut(s)	456
XspI	CTAG	5 cut(s)	78, 219, 242, 453, 596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.