Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003855.1

Orthogroup ID

OG0011098

Physical Location & Seq

Genomic Coordinates Reverse (-)

36067 .. 37244

Gene Structure 1178 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003855.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

atggctattctttctattcctagaattagggtcaagcagtggctagttgtggactttaagaaggcggagtggaggggatacttcaatagtatgttttggaatctgaattactgggataaggcaagtacccttgcaggggaggttgaaaatccaaacaagacatttccaaaggcgctccttggggctgtagttgtggtggtttgttcatatttgattccacttcttgctggtacaggagccttaaactccccatctagcgagtggactgatgggtactttgcggaagttgggatgttaataggtggcgtttggctcaagtggtggattcaagcagcttctgcaatgtctaacttggggttgttcgaagcagaaatgagcagtgatgcctttcaacttcttgggatgagcgagatgggaatgcttccggctgtatttgcttcaaggtctaagtatggaacacctaccataagcattttgtgctctgccaccggagtcatcttcttgtcgtggatgagttttcaggaaatcttggagtttttgaatttcttatacgctataggaatgcttcttgagtttgctgcttttataaaattgagaataaagaagccagaccttcacagaccttaccgagttcggagttcccttccagacatctggggcaataatgatttgcctgcctcccgcattgttgcttattctcgttatgtgcttggcttctctgaggacattcttattcatgcaaaggaccatggatgggcacagttcgaagcagaactacccactgaggctcccaagaattgttcggatggccactccgtgttttcacagttgcatcaagaagttcaagatgaatcttctgttagccttctctcagacttgccatctgttaaagcagaacaagaatcttcgacaataaggccagaagaagccttcaaattagagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015179 GO:0015203 GO:0015291 GO:0015297 GO:0015318 GO:0015711 GO:0015807 GO:0015846 GO:0015849 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1902047 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2

Protein Analysis

314

Amino Acids

35.17

Weight (kDa)

5.27

Isoelectric Point (pI)

39.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19553
fragaria_vesca	FvH4_2g03970
malus_domestica	MD05G1096900.v1.1
prunus_persica	Prupe.8G141300_v2.0.a1 Prupe.8G141300_v2.0.a1 Prupe.8G141300_v2.0.a1
pyrus_communis	pycom05g09560
rosa_chinensis	RchiOBHm_Chr6g0253031 RchiOBHm_Chr6g0253191
rosa_laevigata	RLG00000015042
rosa_multiflora	Rmu_sc0002560.1_g000012 Rmu_sc0003855.1_g000010 Rmu_sc0003898.1_g000001
rosa_roxburghii	Rroxscaffold_7G00212180
rosa_rugosa	Rorug05G0542900
rosa_samantha	Rh6AG056900 Rh6BG051500 Rh6CG049300 Rh6DG045000
rosa_wichuraiana	Rw6G005200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	587
AciI	CCGC	3 cut(s)	65, 281, 682
AcoI	YGGCCR	1 cut(s)	808
AcsI	RAATTY	1 cut(s)	541
AdeI	CACNNNGTG	1 cut(s)	817
AfaI	GTAC	3 cut(s)	127, 232, 275
AfiI	CCNNNNNNNGG	3 cut(s)	135, 136, 754
AgsI	TTSAA	8 cut(s)	85, 146, 329, 392, 441, 541, 845, 934
AluBI	AGCT	1 cut(s)	335
AluI	AGCT	1 cut(s)	335
Alw21I	GWGCWC	1 cut(s)	482
AlwNI	CAGNNNCTG	1 cut(s)	338
AoxI	GGCC	2 cut(s)	808, 917
ApeKI	GCWGC	2 cut(s)	332, 578
ApoI	RAATTY	1 cut(s)	541
AspLEI	GCGC	1 cut(s)	175
AspS9I	GGNCC	1 cut(s)	745
AsuII	TTCGAA	2 cut(s)	363, 765
AvaII	GGWCC	1 cut(s)	745
BaeGI	GKGCMC	1 cut(s)	760
BalI	TGGCCA	1 cut(s)	810
BarI	GAAGNNNNNNTAC	2 cut(s)	759, 791
Bbv12I	GWGCWC	1 cut(s)	482
BbvI	GCAGC	2 cut(s)	344, 565
BccI	CCATC	6 cut(s)	259, 263, 406, 747, 800, 889
BciVI	GTATCC	1 cut(s)	71
BfaI	CTAG	3 cut(s)	21, 44, 255
BfmI	CTRYAG	2 cut(s)	186, 555
BfoI	RGCGCY	1 cut(s)	176
BfuI	GTATCC	1 cut(s)	71
BisI	GCNGC	2 cut(s)	333, 579
BlsI	GCNGC	2 cut(s)	334, 580
Bme18I	GGWCC	1 cut(s)	745
BmgT120I	GGNCC	1 cut(s)	745
BmiI	GGNNCC	2 cut(s)	238, 789
BmrI	ACTGGG	1 cut(s)	121
BmsI	GCATC	2 cut(s)	373, 841
BmuI	ACTGGG	1 cut(s)	121
Bpu14I	TTCGAA	2 cut(s)	363, 765
BpuEI	CTTGAG	2 cut(s)	299, 590
BsaJI	CCNNGG	2 cut(s)	178, 748
BsaWI	WCCGGW	1 cut(s)	488
BsaXI	ACNNNNNCTCC	2 cut(s)	772, 802
Bsc4I	CCNNNNNNNGG	3 cut(s)	135, 136, 754
Bse1I	ACTGG	1 cut(s)	116
Bse3DI	GCAATG	1 cut(s)	348
BseDI	CCNNGG	2 cut(s)	178, 748
BseGI	GGATG	5 cut(s)	297, 408, 516, 758, 811
BseLI	CCNNNNNNNGG	3 cut(s)	135, 136, 754
BseMI	GCAATG	1 cut(s)	348
BseMII	CTCAG	3 cut(s)	711, 774, 885
BseNI	ACTGG	1 cut(s)	116
BseSI	GKGCMC	1 cut(s)	760
BseXI	GCAGC	2 cut(s)	344, 565
BshFI	GGCC	2 cut(s)	810, 919
BsiHKAI	GWGCWC	1 cut(s)	482
BsiSI	CCGG	2 cut(s)	425, 489
BslI	CCNNNNNNNGG	3 cut(s)	135, 136, 754
BsmI	GAATGC	2 cut(s)	423, 567
BsnI	GGCC	2 cut(s)	810, 919
Bsp119I	TTCGAA	2 cut(s)	363, 765
Bsp1286I	GDGCHC	2 cut(s)	482, 760
Bsp19I	CCATGG	1 cut(s)	748
BspACI	CCGC	3 cut(s)	65, 281, 682
BspANI	GGCC	2 cut(s)	810, 919
BspCNI	CTCAG	3 cut(s)	712, 775, 884
BspLI	GGNNCC	2 cut(s)	238, 789
BspT104I	TTCGAA	2 cut(s)	363, 765
BsrDI	GCAATG	1 cut(s)	348
BsrI	ACTGG	1 cut(s)	116
BssECI	CCNNGG	2 cut(s)	178, 748
BssT1I	CCWWGG	2 cut(s)	178, 748
Bst4CI	ACNGT	2 cut(s)	762, 828
BstAPI	GCANNNNNTGC	2 cut(s)	338, 477
BstBI	TTCGAA	2 cut(s)	363, 765
BstC8I	GCNNGC	1 cut(s)	675
BstDEI	CTNAG	4 cut(s)	447, 720, 783, 871
BstDSI	CCRYGG	1 cut(s)	748
BstF5I	GGATG	5 cut(s)	297, 408, 516, 758, 811
BstH2I	RGCGCY	1 cut(s)	176
BstHHI	GCGC	1 cut(s)	175
BstMWI	GCNNNNNNNGC	3 cut(s)	338, 434, 477
BstSFI	CTRYAG	2 cut(s)	186, 555
BstSLI	GKGCMC	1 cut(s)	760
BstV1I	GCAGC	2 cut(s)	344, 565
BstXI	CCANNNNNNTGG	1 cut(s)	654
BsuI	GTATCC	1 cut(s)	71
BsuRI	GGCC	2 cut(s)	810, 919
BtgI	CCRYGG	1 cut(s)	748
BtsCI	GGATG	5 cut(s)	297, 408, 516, 758, 811
BtsI	GCAGTG	2 cut(s)	44, 385
BtsIMutI	CAGTG	3 cut(s)	44, 385, 780
Cac8I	GCNNGC	1 cut(s)	675
CaiI	CAGNNNCTG	1 cut(s)	338
CfoI	GCGC	1 cut(s)	175
Cfr13I	GGNCC	1 cut(s)	745
Csp6I	GTAC	3 cut(s)	126, 231, 274
CviAII	CATG	2 cut(s)	737, 749
CviQI	GTAC	3 cut(s)	126, 231, 274
DdeI	CTNAG	4 cut(s)	447, 720, 783, 871
DraIII	CACNNNGTG	1 cut(s)	817
EaeI	YGGCCR	1 cut(s)	808
EciI	GGCGGA	1 cut(s)	80
Eco130I	CCWWGG	2 cut(s)	178, 748
Eco47I	GGWCC	1 cut(s)	745
EcoT14I	CCWWGG	2 cut(s)	178, 748
ErhI	CCWWGG	2 cut(s)	178, 748
FaeI	CATG	2 cut(s)	740, 752
FatI	CATG	2 cut(s)	736, 748
FauI	CCCGC	1 cut(s)	689
Fnu4HI	GCNGC	2 cut(s)	333, 579
FokI	GGATG	5 cut(s)	304, 415, 523, 765, 818
Fsp4HI	GCNGC	2 cut(s)	333, 579
FspBI	CTAG	3 cut(s)	21, 44, 255
GlaI	GCGC	1 cut(s)	174
GluI	GCNGC	2 cut(s)	333, 579
HaeII	RGCGCY	1 cut(s)	176
HaeIII	GGCC	2 cut(s)	810, 919
HapII	CCGG	2 cut(s)	425, 489
HhaI	GCGC	1 cut(s)	175
Hin1II	CATG	2 cut(s)	740, 752
Hin6I	GCGC	1 cut(s)	173
HinP1I	GCGC	1 cut(s)	173
HinfI	GANTC	6 cut(s)	100, 214, 325, 492, 851, 902
HpaII	CCGG	2 cut(s)	425, 489
Hpy166II	GTNNAC	2 cut(s)	52, 264
Hpy188I	TCNGA	5 cut(s)	105, 636, 721, 805, 874
Hpy188III	TCNNGA	5 cut(s)	521, 569, 647, 836, 845
Hpy8I	GTNNAC	2 cut(s)	52, 264
HpyAV	CCTTC	5 cut(s)	55, 623, 653, 875, 940
HpyCH4III	ACNGT	2 cut(s)	762, 828
HpyCH4V	TGCA	4 cut(s)	134, 341, 740, 832
HpyF10VI	GCNNNNNNNGC	3 cut(s)	338, 434, 477
HpyF3I	CTNAG	4 cut(s)	447, 720, 783, 871
Hsp92II	CATG	2 cut(s)	740, 752
HspAI	GCGC	1 cut(s)	173
LmnI	GCTCC	3 cut(s)	180, 236, 793
Lsp1109I	GCAGC	2 cut(s)	344, 565
LweI	GCATC	2 cut(s)	373, 841
MaeI	CTAG	3 cut(s)	21, 44, 255
MboII	GAAGA	4 cut(s)	490, 846, 897, 935
MhlI	GDGCHC	2 cut(s)	482, 760
MlsI	TGGCCA	1 cut(s)	810
MluCI	AATT	6 cut(s)	24, 106, 541, 590, 796, 935
MluNI	TGGCCA	1 cut(s)	810
MlyI	GAGTC	1 cut(s)	501
MnlI	CCTC	5 cut(s)	66, 133, 688, 715, 778
Mox20I	TGGCCA	1 cut(s)	810
MscI	TGGCCA	1 cut(s)	810
MseI	TTAA	4 cut(s)	57, 242, 296, 888
Msp20I	TGGCCA	1 cut(s)	810
MspI	CCGG	2 cut(s)	425, 489
Mva1269I	GAATGC	2 cut(s)	423, 567
MwoI	GCNNNNNNNGC	3 cut(s)	338, 434, 477
NcoI	CCATGG	1 cut(s)	748
NlaIII	CATG	2 cut(s)	740, 752
NlaIV	GGNNCC	2 cut(s)	238, 789
NspV	TTCGAA	2 cut(s)	363, 765
PctI	GAATGC	2 cut(s)	423, 567
PfeI	GAWTC	5 cut(s)	100, 214, 325, 851, 902
PkrI	GCNGC	2 cut(s)	334, 580
PleI	GAGTC	1 cut(s)	500
PpsI	GAGTC	1 cut(s)	500
PsiI	TTATAA	1 cut(s)	587
PspN4I	GGNNCC	2 cut(s)	238, 789
PspPI	GGNCC	1 cut(s)	745
PstNI	CAGNNNCTG	1 cut(s)	338
RsaI	GTAC	3 cut(s)	127, 232, 275
RsaNI	GTAC	3 cut(s)	126, 231, 274
SaqAI	TTAA	4 cut(s)	57, 242, 296, 888
SatI	GCNGC	2 cut(s)	333, 579
Sau96I	GGNCC	1 cut(s)	745
SchI	GAGTC	1 cut(s)	501
SduI	GDGCHC	2 cut(s)	482, 760
SetI	ASST	7 cut(s)	144, 304, 337, 446, 463, 615, 625
SfaNI	GCATC	2 cut(s)	373, 841
SfcI	CTRYAG	2 cut(s)	186, 555
SfuI	TTCGAA	2 cut(s)	363, 765
SinI	GGWCC	1 cut(s)	745
SmlI	CTYRAG	2 cut(s)	314, 569
SmoI	CTYRAG	2 cut(s)	314, 569
Sse9I	AATT	6 cut(s)	24, 106, 541, 590, 796, 935
SsiI	CCGC	3 cut(s)	65, 281, 682
SspMI	CTAG	3 cut(s)	21, 44, 255
StyI	CCWWGG	2 cut(s)	178, 748
TaaI	ACNGT	2 cut(s)	762, 828
TaqI	TCGA	3 cut(s)	363, 765, 908
TasI	AATT	6 cut(s)	24, 106, 541, 590, 796, 935
TfiI	GAWTC	5 cut(s)	100, 214, 325, 851, 902
Tru1I	TTAA	4 cut(s)	57, 242, 296, 888
Tru9I	TTAA	4 cut(s)	57, 242, 296, 888
TscAI	CASTG	3 cut(s)	44, 385, 787
TseI	GCWGC	2 cut(s)	332, 578
TspDTI	ATGAA	3 cut(s)	195, 725, 864
TspGWI	ACGGA	1 cut(s)	805
TspRI	CASTG	3 cut(s)	44, 385, 787
VpaK11BI	GGWCC	1 cut(s)	745
XapI	RAATTY	1 cut(s)	541
XcmI	CCANNNNNNNNNTGG	1 cut(s)	258
XspI	CTAG	3 cut(s)	21, 44, 255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.