Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0011098

Physical Location & Seq

Genomic Coordinates Reverse (-)

8251394 .. 8252419

Gene Structure 1026 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG051500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGGTGAAGAGGGAATGGTCAGTGATGTCAAGGACACAGCTGCTGCCAAACCAAACCCAAAGTTGACACTTTTGCCTCTTATAGCTTTAATTTTCTATGAGGTTTCGGGGGGTCCTTTTGGAGTTGAGGATTCAGTCAGGGCTGGAGGAGGCCCTCTTTTATCATTGCTTGGTTTCTTAGTGTTTCCCTTGTTTTGGAGCATTCCAGAAGCTTTGGTGACAGCTGAGCTTGCCACAAGCTTCCCTGAAAATGGTGGATATGTGCTTTGGATATCAGCGGCTTTCGGGCCATTTTGGGGATTCCAAGAGGGGTTTTGGAAATGGTTTAGTGGGGTTATGGACAATGCTCTTTACCCTGTCCTATTCTTGGATTACTTGAAGCATTCATTTCCCATATTTAATCGGATGATTGCTCGAATTCCAGCTCTTTTGGGAATAACATTCTCATTGACTTACTTGAATTACCGCGGACTGCATATTGTCGGGTTCTCGGCTGTTTCACTTGCTGTTTTCTCACTTTGCCCATTTATCGTGATGGCTATTCTTTCTATTCCTAGAATTAGGGTCAAGCAGTGGCTAGTTGTGGACTTTAAGAAGGTGGAGTGGAGGGGATACTTCAATAGTATGTTTTGGAATCTGAATTACTGGGATAAGGCAAGTACCCTTGCAGGGGAGGTTGAAAATCCAAGCAAGACATTTCCAAAGGCGCTCCTTGGGGCTGTAGTTGTGGTGGTTTGTTCATATTTGATTCCACTTCTTGCTGGTACAGGAGCCTTAAACTCTCCATCTAGCGAGTGGACTGATGGGTACTTTGCAGAAGTTGGGATGTTAATAGGTGGCGTTTGGCTCAAGTGGTGGATTCAAGCAGCTTCTGCAATGTCTAACTTGGGGTTGTTCGAAGCAGAAATGAGCAGTGATGCCTTTCAACTTCTTGGGATGAGCGAGATGGGAATGCTTCCGGCTATATTTGCTTCAAGGTTAGCTATTCTATATGCTTTCACTTCCTTGCTGATTGTTTTTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015179 GO:0015203 GO:0015291 GO:0015297 GO:0015318 GO:0015711 GO:0015807 GO:0015846 GO:0015849 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1902047 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2

Protein Analysis

341

Amino Acids

37.58

Weight (kDa)

5.16

Isoelectric Point (pI)

28.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_permease_2	PF13520	23 - 327	2.9e-19	Amino acid permease
AA_permease	PF00324	48 - 323	1.2e-08	Amino acid permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19553
fragaria_vesca	FvH4_2g03970
malus_domestica	MD05G1096900.v1.1
prunus_persica	Prupe.8G141300_v2.0.a1 Prupe.8G141300_v2.0.a1 Prupe.8G141300_v2.0.a1
pyrus_communis	pycom05g09560
rosa_chinensis	RchiOBHm_Chr6g0253031 RchiOBHm_Chr6g0253191
rosa_laevigata	RLG00000015042
rosa_multiflora	Rmu_sc0002560.1_g000012 Rmu_sc0003855.1_g000010 Rmu_sc0003898.1_g000001
rosa_roxburghii	Rroxscaffold_7G00212180
rosa_rugosa	Rorug05G0542900
rosa_samantha	Rh6AG056900 Rh6BG051500 Rh6CG049300 Rh6DG045000
rosa_wichuraiana	Rw6G005200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	468
AciI	CCGC	3 cut(s)	278, 466, 468
AcsI	RAATTY	1 cut(s)	417
AfaI	GTAC	3 cut(s)	661, 766, 809
AfiI	CCNNNNNNNGG	6 cut(s)	195, 251, 296, 367, 669, 670
AgsI	TTSAA	7 cut(s)	379, 460, 619, 680, 863, 926, 975
AluBI	AGCT	9 cut(s)	41, 86, 212, 224, 229, 240, 425, 869, 983
AluI	AGCT	9 cut(s)	41, 86, 212, 224, 229, 240, 425, 869, 983
AlwNI	CAGNNNCTG	2 cut(s)	44, 872
AoxI	GGCC	2 cut(s)	151, 287
ApeKI	GCWGC	3 cut(s)	41, 44, 866
ApoI	RAATTY	1 cut(s)	417
AspLEI	GCGC	1 cut(s)	709
AspS9I	GGNCC	3 cut(s)	113, 152, 287
AsuHPI	GGTGA	2 cut(s)	17, 229
AsuII	TTCGAA	1 cut(s)	897
AvaII	GGWCC	1 cut(s)	113
BbvI	GCAGC	3 cut(s)	28, 31, 878
BccI	CCATC	4 cut(s)	529, 793, 797, 940
BciVI	GTATCC	1 cut(s)	605
BfaI	CTAG	3 cut(s)	555, 578, 789
BfmI	CTRYAG	1 cut(s)	720
BfoI	RGCGCY	1 cut(s)	710
BfuI	GTATCC	1 cut(s)	605
BisI	GCNGC	4 cut(s)	42, 45, 279, 867
BlpI	GCTNAGC	1 cut(s)	225
BlsI	GCNGC	4 cut(s)	43, 46, 280, 868
Bme18I	GGWCC	1 cut(s)	113
BmgT120I	GGNCC	3 cut(s)	113, 152, 287
BmiI	GGNNCC	2 cut(s)	114, 772
BmrI	ACTGGG	1 cut(s)	655
BmsI	GCATC	1 cut(s)	907
BmuI	ACTGGG	1 cut(s)	655
BpmI	CTGGAG	1 cut(s)	165
Bpu1102I	GCTNAGC	1 cut(s)	225
Bpu14I	TTCGAA	1 cut(s)	897
BpuEI	CTTGAG	1 cut(s)	833
BsaJI	CCNNGG	2 cut(s)	466, 712
Bsc4I	CCNNNNNNNGG	6 cut(s)	195, 251, 296, 367, 669, 670
Bse1I	ACTGG	1 cut(s)	650
Bse3DI	GCAATG	2 cut(s)	164, 882
BseDI	CCNNGG	2 cut(s)	466, 712
BseGI	GGATG	3 cut(s)	411, 831, 942
BseLI	CCNNNNNNNGG	6 cut(s)	195, 251, 296, 367, 669, 670
BseMI	GCAATG	2 cut(s)	164, 882
BseMII	CTCAG	1 cut(s)	216
BseNI	ACTGG	1 cut(s)	650
BseRI	GAGGAG	1 cut(s)	162
BseXI	GCAGC	3 cut(s)	28, 31, 878
Bsh1236I	CGCG	1 cut(s)	468
BshFI	GGCC	2 cut(s)	153, 289
BsiSI	CCGG	1 cut(s)	959
BslI	CCNNNNNNNGG	6 cut(s)	195, 251, 296, 367, 669, 670
BsmI	GAATGC	3 cut(s)	201, 382, 957
BsnI	GGCC	2 cut(s)	153, 289
Bsp119I	TTCGAA	1 cut(s)	897
Bsp1720I	GCTNAGC	1 cut(s)	225
BspACI	CCGC	3 cut(s)	278, 466, 468
BspANI	GGCC	2 cut(s)	153, 289
BspCNI	CTCAG	1 cut(s)	217
BspFNI	CGCG	1 cut(s)	468
BspLI	GGNNCC	2 cut(s)	114, 772
BspT104I	TTCGAA	1 cut(s)	897
BsrDI	GCAATG	2 cut(s)	164, 882
BsrI	ACTGG	1 cut(s)	650
BssECI	CCNNGG	2 cut(s)	466, 712
BssT1I	CCWWGG	1 cut(s)	712
Bst6I	CTCTTC	1 cut(s)	3
BstAPI	GCANNNNNTGC	1 cut(s)	872
BstBI	TTCGAA	1 cut(s)	897
BstC8I	GCNNGC	1 cut(s)	231
BstDEI	CTNAG	2 cut(s)	178, 225
BstDSI	CCRYGG	1 cut(s)	466
BstF5I	GGATG	3 cut(s)	411, 831, 942
BstFNI	CGCG	1 cut(s)	468
BstH2I	RGCGCY	1 cut(s)	710
BstHHI	GCGC	1 cut(s)	709
BstMWI	GCNNNNNNNGC	3 cut(s)	230, 872, 968
BstSFI	CTRYAG	1 cut(s)	720
BstUI	CGCG	1 cut(s)	468
BstV1I	GCAGC	3 cut(s)	28, 31, 878
BsuI	GTATCC	1 cut(s)	605
BsuRI	GGCC	2 cut(s)	153, 289
BtgI	CCRYGG	1 cut(s)	466
BtsCI	GGATG	3 cut(s)	411, 831, 942
BtsI	GCAGTG	2 cut(s)	578, 919
BtsIMutI	CAGTG	3 cut(s)	28, 578, 919
Cac8I	GCNNGC	1 cut(s)	231
CaiI	CAGNNNCTG	2 cut(s)	44, 872
CfoI	GCGC	1 cut(s)	709
Cfr13I	GGNCC	3 cut(s)	113, 152, 287
Cfr42I	CCGCGG	1 cut(s)	469
Csp6I	GTAC	3 cut(s)	660, 765, 808
CviQI	GTAC	3 cut(s)	660, 765, 808
DdeI	CTNAG	2 cut(s)	178, 225
Eam1104I	CTCTTC	1 cut(s)	3
EarI	CTCTTC	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	712
Eco32I	GATATC	1 cut(s)	273
Eco47I	GGWCC	1 cut(s)	113
EcoO109I	RGGNCCY	2 cut(s)	113, 152
EcoRI	GAATTC	1 cut(s)	417
EcoRV	GATATC	1 cut(s)	273
EcoT14I	CCWWGG	1 cut(s)	712
ErhI	CCWWGG	1 cut(s)	712
Fnu4HI	GCNGC	4 cut(s)	42, 45, 279, 867
FokI	GGATG	3 cut(s)	418, 838, 949
Fsp4HI	GCNGC	4 cut(s)	42, 45, 279, 867
FspBI	CTAG	3 cut(s)	555, 578, 789
GlaI	GCGC	1 cut(s)	708
GluI	GCNGC	4 cut(s)	42, 45, 279, 867
GsuI	CTGGAG	1 cut(s)	165
HaeII	RGCGCY	1 cut(s)	710
HaeIII	GGCC	2 cut(s)	153, 289
HapII	CCGG	1 cut(s)	959
HhaI	GCGC	1 cut(s)	709
Hin6I	GCGC	1 cut(s)	707
HinP1I	GCGC	1 cut(s)	707
HincII	GTYRAC	1 cut(s)	66
HindII	GTYRAC	1 cut(s)	66
HindIII	AAGCTT	2 cut(s)	210, 238
HinfI	GANTC	5 cut(s)	131, 300, 634, 748, 859
HpaII	CCGG	1 cut(s)	959
HphI	GGTGA	2 cut(s)	17, 229
Hpy166II	GTNNAC	3 cut(s)	66, 586, 798
Hpy188I	TCNGA	2 cut(s)	405, 639
Hpy188III	TCNNGA	2 cut(s)	206, 532
Hpy8I	GTNNAC	3 cut(s)	66, 586, 798
HpyAV	CCTTC	1 cut(s)	589
HpyCH4V	TGCA	4 cut(s)	475, 668, 815, 875
HpyF10VI	GCNNNNNNNGC	3 cut(s)	230, 872, 968
HpyF3I	CTNAG	2 cut(s)	178, 225
HspAI	GCGC	1 cut(s)	707
KspI	CCGCGG	1 cut(s)	469
LmnI	GCTCC	3 cut(s)	198, 714, 770
Lsp1109I	GCAGC	3 cut(s)	28, 31, 878
LweI	GCATC	1 cut(s)	907
MaeI	CTAG	3 cut(s)	555, 578, 789
MaeIII	GTNAC	1 cut(s)	217
MboII	GAAGA	1 cut(s)	20
MluCI	AATT	5 cut(s)	90, 417, 460, 558, 640
MseI	TTAA	5 cut(s)	89, 399, 591, 776, 830
MspA1I	CMGCKG	4 cut(s)	41, 224, 278, 468
MspI	CCGG	1 cut(s)	959
Mva1269I	GAATGC	3 cut(s)	201, 382, 957
MvnI	CGCG	1 cut(s)	468
MwoI	GCNNNNNNNGC	3 cut(s)	230, 872, 968
NlaIV	GGNNCC	2 cut(s)	114, 772
NmeAIII	GCCGAG	1 cut(s)	470
NmuCI	GTSAC	1 cut(s)	217
NspV	TTCGAA	1 cut(s)	897
PctI	GAATGC	3 cut(s)	201, 382, 957
PfeI	GAWTC	5 cut(s)	131, 300, 634, 748, 859
PkrI	GCNGC	4 cut(s)	43, 46, 280, 868
PpuMI	RGGWCCY	1 cut(s)	113
Psp5II	RGGWCCY	1 cut(s)	113
PspN4I	GGNNCC	2 cut(s)	114, 772
PspPI	GGNCC	3 cut(s)	113, 152, 287
PspPPI	RGGWCCY	1 cut(s)	113
PstNI	CAGNNNCTG	2 cut(s)	44, 872
PvuII	CAGCTG	2 cut(s)	41, 224
RsaI	GTAC	3 cut(s)	661, 766, 809
RsaNI	GTAC	3 cut(s)	660, 765, 808
SacII	CCGCGG	1 cut(s)	469
SaqAI	TTAA	5 cut(s)	89, 399, 591, 776, 830
SatI	GCNGC	4 cut(s)	42, 45, 279, 867
Sau96I	GGNCC	3 cut(s)	113, 152, 287
SfaNI	GCATC	1 cut(s)	907
SfcI	CTRYAG	1 cut(s)	720
Sfr303I	CCGCGG	1 cut(s)	469
SfuI	TTCGAA	1 cut(s)	897
SgrBI	CCGCGG	1 cut(s)	469
SinI	GGWCC	1 cut(s)	113
SmlI	CTYRAG	1 cut(s)	848
SmoI	CTYRAG	1 cut(s)	848
Sse9I	AATT	5 cut(s)	90, 417, 460, 558, 640
SsiI	CCGC	3 cut(s)	278, 466, 468
SspMI	CTAG	3 cut(s)	555, 578, 789
StyI	CCWWGG	1 cut(s)	712
TaqI	TCGA	2 cut(s)	415, 897
TasI	AATT	5 cut(s)	90, 417, 460, 558, 640
TauI	GCSGC	1 cut(s)	281
TfiI	GAWTC	5 cut(s)	131, 300, 634, 748, 859
Tru1I	TTAA	5 cut(s)	89, 399, 591, 776, 830
Tru9I	TTAA	5 cut(s)	89, 399, 591, 776, 830
TscAI	CASTG	3 cut(s)	28, 578, 919
TseFI	GTSAC	1 cut(s)	217
TseI	GCWGC	3 cut(s)	41, 44, 866
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	2 cut(s)	375, 729
TspRI	CASTG	3 cut(s)	28, 578, 919
VpaK11BI	GGWCC	1 cut(s)	113
XapI	RAATTY	1 cut(s)	417
XcmI	CCANNNNNNNNNTGG	1 cut(s)	792
XspI	CTAG	3 cut(s)	555, 578, 789

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.