Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0011098

Physical Location & Seq

Genomic Coordinates Reverse (-)

15908215 .. 15910602

Gene Structure 2388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G141300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1518 bp

ATGGCTGAAGAGGGAATAGTCAGTGATGATACAAAGAACACAGCCGCAAAACCAAACCCAAAGTTGACACTTTTGCCTCTTATAGCTCTAATTTTCTATGAGGTTTCTGGGGGTCCTTTTGGTGTAGAGGATTCAGTCAGGGCTGGGGGTGGCCCTCTTTTGTCTTTGCTTGGTTTCTTGGTGTTTCCCTTGTTTTGGAGCATCCCAGAAGCTTTAGTGACAGCTGAGCTTGCCACAAGCTTCCCTGAAAATGGTGGATATGTGCTCTGGATATCAGCAGCTTTTGGGCCTTTCTGGGGTTTCCAAGAGGGCTTTTGGAAATGGTTTAGTGGGGTTATGGACAACGCTCTTTACCCTGTCCTATTCCTGGATTACTTGAAGCATTCATTTCCCATCTTCAACCGGTTGATAGCTCGAATTCCAGCTCTTTTGGGAATAACATTCTCATTGACATACTTGAACTACCGTGGACTACACATTGTCGGGTTCTCTGCTGTTTCCCTTGCGATTTTCTCACTTTGCCCGTTTCTTGTAATGGCGATTCTTTCGATTCCCAGAATAAGGGTTAAGCAGTGGCTAGTTGTAGACTTTAAGAAGGTGGATTGGAGGGGATACTTCAATAGTATGTTTTGGAATCTGAACTATTGGGATAAGGCAAGTACCCTTGCAGGGGAGGTTGAAAATCCAAGTAAGACATTTCCAAAGGCTCTTCTCGGGGCTGTAGTTGTGGTGGTTTCTTCATATTTGATCCCACTTCTTGCTGGAACAGGAGCTTTAAACTCTGCCTCTAGTGACTGGACTGATGGGTACTTTGCAGAAGTTGGGATGTTAATAGGTGGCTTTTGGCTTAAGTGGTGGATTCAAGCGGCTGCTGCAATGTCTAACATGGGGTTGTTTGAAGCAGAAATGAGCAGTGATGCCTTTCAACTTCTTGGGATGAGTGAGATGGGAATGCTTCCGGCTATATTTGCTTCAAGGTCAAAGTATGGAACACCTACTGTTAGCATTTTGTGCTCTGCTACCGGAGTTATCTTCTTGTCGTGGATGAGTTTTCAGGAGATCTTGGAATTTCTTAATTTCTTATATGCTATAGGAATGCTTCTTGAATTTGCAGCCTTTATAAAATTGAGAGTAAAGAAGCCAGACCTTCATCGACCTTACAAAGTCCCCTTCCAAACATTTGGGGCAACAATGCTTTGCCTGCCTCCTGCATTGTTGCTTGTTCTTGTTATGTGCTTGGCTTCTCTAAGGACTTTCTTTGTAAGTGGTTGTGTAATCATTGTTGGGGTTTTGTTGTACCCTCTTTTAGTTCATGCAAAGGATAGGAAGTGGGCACATTTTGATGCAGAACAACCTGCTGAGCCTCCCCTTAATTGTCCAGCTGGCCATTCATCGGCTTTGCAGTTGCATCCAGAAGATGTAGATGAGGCTTCAGTTGGCCTTCTCACAGACTTGTCACTTGATACAGAACAAGAACCCTCCAAATTGAGGTCAGAAGAAGTCTTGAAATTAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015179 GO:0015203 GO:0015291 GO:0015297 GO:0015318 GO:0015711 GO:0015807 GO:0015846 GO:0015849 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1902047 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2

Protein Analysis

506

Amino Acids

55.8

Weight (kDa)

5.31

Isoelectric Point (pI)

34.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19553
fragaria_vesca	FvH4_2g03970
malus_domestica	MD05G1096900.v1.1
prunus_persica	Prupe.8G141300_v2.0.a1 Prupe.8G141300_v2.0.a1 Prupe.8G141300_v2.0.a1
pyrus_communis	pycom05g09560
rosa_chinensis	RchiOBHm_Chr6g0253031 RchiOBHm_Chr6g0253191
rosa_laevigata	RLG00000015042
rosa_multiflora	Rmu_sc0002560.1_g000012 Rmu_sc0003855.1_g000010 Rmu_sc0003898.1_g000001
rosa_roxburghii	Rroxscaffold_7G00212180
rosa_rugosa	Rorug05G0542900
rosa_samantha	Rh6AG056900 Rh6BG051500 Rh6CG049300 Rh6DG045000
rosa_wichuraiana	Rw6G005200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1121
Acc36I	ACCTGC	1 cut(s)	1363
AccI	GTMKAC	1 cut(s)	585
AciI	CCGC	2 cut(s)	45, 866
AclWI	GGATC	1 cut(s)	742
AcoI	YGGCCR	1 cut(s)	1384
AcsI	RAATTY	3 cut(s)	417, 1067, 1106
AcuI	CTGAAG	2 cut(s)	27, 1416
AfaI	GTAC	3 cut(s)	661, 809, 1298
AfiI	CCNNNNNNNGG	9 cut(s)	195, 251, 296, 367, 561, 669, 670, 1393, 1488
AflII	CTTAAG	1 cut(s)	848
AgeI	ACCGGT	1 cut(s)	402
AjnI	CCWGG	1 cut(s)	366
Alw21I	GWGCWC	2 cut(s)	267, 1016
AlwI	GGATC	1 cut(s)	742
Ama87I	CYCGRG	1 cut(s)	713
AoxI	GGCC	4 cut(s)	151, 287, 1384, 1438
ApeKI	GCWGC	4 cut(s)	278, 869, 872, 1112
ApoI	RAATTY	3 cut(s)	417, 1067, 1106
AsiGI	ACCGGT	1 cut(s)	402
AspS9I	GGNCC	3 cut(s)	113, 152, 287
AvaI	CYCGRG	1 cut(s)	713
AvaII	GGWCC	1 cut(s)	113
BaeGI	GKGCMC	1 cut(s)	1336
BalI	TGGCCA	1 cut(s)	1386
Bbv12I	GWGCWC	2 cut(s)	267, 1016
BbvI	GCAGC	4 cut(s)	290, 856, 859, 1124
BccI	CCATC	3 cut(s)	401, 797, 940
BciT130I	CCWGG	1 cut(s)	368
BciVI	GTATCC	1 cut(s)	605
BfaI	CTAG	2 cut(s)	578, 789
BfmI	CTRYAG	2 cut(s)	720, 1089
BfrI	CTTAAG	1 cut(s)	848
BfuAI	ACCTGC	1 cut(s)	1363
BfuI	GTATCC	1 cut(s)	605
BglII	AGATCT	1 cut(s)	1059
BisI	GCNGC	6 cut(s)	45, 279, 867, 870, 873, 1113
BlpI	GCTNAGC	2 cut(s)	225, 1359
BlsI	GCNGC	6 cut(s)	46, 280, 868, 871, 874, 1114
Bme1390I	CCNGG	1 cut(s)	368
Bme18I	GGWCC	1 cut(s)	113
BmeT110I	CYCGRG	1 cut(s)	713
BmgT120I	GGNCC	3 cut(s)	113, 152, 287
BmiI	GGNNCC	1 cut(s)	114
BmrFI	CCNGG	1 cut(s)	368
BmsI	GCATC	4 cut(s)	210, 907, 1333, 1417
Bpu1102I	GCTNAGC	2 cut(s)	225, 1359
BsaJI	CCNNGG	1 cut(s)	466
BsaWI	WCCGGW	2 cut(s)	402, 1022
Bsc4I	CCNNNNNNNGG	9 cut(s)	195, 251, 296, 367, 561, 669, 670, 1393, 1488
Bse118I	RCCGGY	1 cut(s)	402
Bse1I	ACTGG	1 cut(s)	800
Bse3DI	GCAATG	1 cut(s)	882
BseBI	CCWGG	1 cut(s)	368
BseDI	CCNNGG	1 cut(s)	466
BseGI	GGATG	5 cut(s)	201, 831, 942, 1050, 1408
BseLI	CCNNNNNNNGG	9 cut(s)	195, 251, 296, 367, 561, 669, 670, 1393, 1488
BseMI	GCAATG	1 cut(s)	882
BseMII	CTCAG	2 cut(s)	216, 1350
BseNI	ACTGG	1 cut(s)	800
BseSI	GKGCMC	1 cut(s)	1336
BseXI	GCAGC	4 cut(s)	290, 856, 859, 1124
BseYI	CCCAGC	1 cut(s)	143
BshFI	GGCC	4 cut(s)	153, 289, 1386, 1440
BshTI	ACCGGT	1 cut(s)	402
BsiHKAI	GWGCWC	2 cut(s)	267, 1016
BsiHKCI	CYCGRG	1 cut(s)	713
BsiSI	CCGG	3 cut(s)	403, 959, 1023
BslFI	GGGAC	1 cut(s)	1151
BslI	CCNNNNNNNGG	9 cut(s)	195, 251, 296, 367, 561, 669, 670, 1393, 1488
BsmFI	GGGAC	1 cut(s)	1151
BsmI	GAATGC	3 cut(s)	382, 957, 1101
BsnI	GGCC	4 cut(s)	153, 289, 1386, 1440
BsoBI	CYCGRG	1 cut(s)	713
Bsp1286I	GDGCHC	3 cut(s)	267, 1016, 1336
Bsp143I	GATC	2 cut(s)	747, 1059
Bsp1720I	GCTNAGC	2 cut(s)	225, 1359
BspACI	CCGC	2 cut(s)	45, 866
BspANI	GGCC	4 cut(s)	153, 289, 1386, 1440
BspCNI	CTCAG	2 cut(s)	217, 1351
BspLI	GGNNCC	1 cut(s)	114
BspMI	ACCTGC	1 cut(s)	1363
BspPI	GGATC	1 cut(s)	742
BspQI	GCTCTTC	1 cut(s)	714
BspTI	CTTAAG	1 cut(s)	848
BsrDI	GCAATG	1 cut(s)	882
BsrFI	RCCGGY	1 cut(s)	402
BsrI	ACTGG	1 cut(s)	800
BssAI	RCCGGY	1 cut(s)	402
BssECI	CCNNGG	1 cut(s)	466
BssMI	GATC	2 cut(s)	747, 1059
Bst2UI	CCWGG	1 cut(s)	368
Bst4CI	ACNGT	2 cut(s)	467, 1000
Bst6I	CTCTTC	2 cut(s)	3, 714
BstAFI	CTTAAG	1 cut(s)	848
BstAPI	GCANNNNNTGC	1 cut(s)	1011
BstC8I	GCNNGC	3 cut(s)	231, 1202, 1384
BstDEI	CTNAG	3 cut(s)	225, 1247, 1359
BstDSI	CCRYGG	1 cut(s)	466
BstF5I	GGATG	5 cut(s)	201, 831, 942, 1050, 1408
BstKTI	GATC	2 cut(s)	750, 1062
BstMBI	GATC	2 cut(s)	747, 1059
BstMWI	GCNNNNNNNGC	5 cut(s)	230, 872, 968, 1011, 1201
BstNI	CCWGG	1 cut(s)	368
BstSCI	CCNGG	1 cut(s)	366
BstSFI	CTRYAG	2 cut(s)	720, 1089
BstSLI	GKGCMC	1 cut(s)	1336
BstV1I	GCAGC	4 cut(s)	290, 856, 859, 1124
BstX2I	RGATCY	1 cut(s)	1059
BstXI	CCANNNNNNTGG	1 cut(s)	1181
BstYI	RGATCY	1 cut(s)	1059
BsuI	GTATCC	1 cut(s)	605
BsuRI	GGCC	4 cut(s)	153, 289, 1386, 1440
BtgI	CCRYGG	1 cut(s)	466
BtsCI	GGATG	5 cut(s)	201, 831, 942, 1050, 1408
BtsI	GCAGTG	2 cut(s)	578, 919
BtsIMutI	CAGTG	3 cut(s)	28, 578, 919
BveI	ACCTGC	1 cut(s)	1363
Cac8I	GCNNGC	3 cut(s)	231, 1202, 1384
Cfr10I	RCCGGY	1 cut(s)	402
Cfr13I	GGNCC	3 cut(s)	113, 152, 287
Csp6I	GTAC	3 cut(s)	660, 808, 1297
CspAI	ACCGGT	1 cut(s)	402
CviAII	CATG	2 cut(s)	886, 1313
CviQI	GTAC	3 cut(s)	660, 808, 1297
DdeI	CTNAG	3 cut(s)	225, 1247, 1359
DpnI	GATC	2 cut(s)	749, 1061
DpnII	GATC	2 cut(s)	747, 1059
DraI	TTTAAA	1 cut(s)	777
EaeI	YGGCCR	1 cut(s)	1384
Eam1104I	CTCTTC	2 cut(s)	3, 714
EarI	CTCTTC	2 cut(s)	3, 714
Eco32I	GATATC	1 cut(s)	273
Eco47I	GGWCC	1 cut(s)	113
Eco57I	CTGAAG	2 cut(s)	27, 1416
Eco88I	CYCGRG	1 cut(s)	713
EcoO109I	RGGNCCY	1 cut(s)	113
EcoRI	GAATTC	1 cut(s)	417
EcoRII	CCWGG	1 cut(s)	366
EcoRV	GATATC	1 cut(s)	273
FaeI	CATG	2 cut(s)	889, 1316
FaqI	GGGAC	1 cut(s)	1151
FatI	CATG	2 cut(s)	885, 1312
FblI	GTMKAC	1 cut(s)	585
Fnu4HI	GCNGC	6 cut(s)	45, 279, 867, 870, 873, 1113
FokI	GGATG	5 cut(s)	188, 838, 949, 1057, 1395
Fsp4HI	GCNGC	6 cut(s)	45, 279, 867, 870, 873, 1113
FspBI	CTAG	2 cut(s)	578, 789
GluI	GCNGC	6 cut(s)	45, 279, 867, 870, 873, 1113
GsaI	CCCAGC	1 cut(s)	147
HaeIII	GGCC	4 cut(s)	153, 289, 1386, 1440
HapII	CCGG	3 cut(s)	403, 959, 1023
Hin1II	CATG	2 cut(s)	889, 1316
HincII	GTYRAC	1 cut(s)	66
HindII	GTYRAC	1 cut(s)	66
HindIII	AAGCTT	2 cut(s)	210, 238
HinfI	GANTC	5 cut(s)	131, 541, 550, 634, 859
HpaII	CCGG	3 cut(s)	403, 959, 1023
Hpy166II	GTNNAC	3 cut(s)	66, 470, 586
Hpy188I	TCNGA	2 cut(s)	639, 1495
Hpy188III	TCNNGA	5 cut(s)	268, 1055, 1103, 1412, 1504
Hpy8I	GTNNAC	3 cut(s)	66, 470, 586
HpyAV	CCTTC	4 cut(s)	589, 1157, 1180, 1451
HpyCH4III	ACNGT	2 cut(s)	467, 1000
HpyCH4V	TGCA	9 cut(s)	668, 815, 875, 1112, 1211, 1316, 1346, 1402, 1408
HpyF10VI	GCNNNNNNNGC	5 cut(s)	230, 872, 968, 1011, 1201
HpyF3I	CTNAG	3 cut(s)	225, 1247, 1359
Hsp92II	CATG	2 cut(s)	889, 1316
Kzo9I	GATC	2 cut(s)	747, 1059
LguI	GCTCTTC	1 cut(s)	714
LmnI	GCTCC	2 cut(s)	198, 770
Lsp1109I	GCAGC	4 cut(s)	290, 856, 859, 1124
LweI	GCATC	4 cut(s)	210, 907, 1333, 1417
MaeI	CTAG	2 cut(s)	578, 789
MaeIII	GTNAC	3 cut(s)	217, 791, 1455
MalI	GATC	2 cut(s)	749, 1061
MboI	GATC	2 cut(s)	747, 1059
MboII	GAAGA	7 cut(s)	20, 388, 701, 729, 1024, 1427, 1508
MflI	RGATCY	1 cut(s)	1059
MhlI	GDGCHC	3 cut(s)	267, 1016, 1336
MlsI	TGGCCA	1 cut(s)	1386
MluCI	AATT	9 cut(s)	90, 417, 1067, 1075, 1106, 1124, 1372, 1484, 1508
MluNI	TGGCCA	1 cut(s)	1386
Mox20I	TGGCCA	1 cut(s)	1386
MscI	TGGCCA	1 cut(s)	1386
MseI	TTAA	7 cut(s)	567, 591, 776, 830, 849, 1074, 1371
MslI	CAYNNNNRTG	1 cut(s)	1341
Msp20I	TGGCCA	1 cut(s)	1386
MspA1I	CMGCKG	2 cut(s)	224, 1382
MspCI	CTTAAG	1 cut(s)	848
MspI	CCGG	3 cut(s)	403, 959, 1023
MspR9I	CCNGG	1 cut(s)	368
Mva1269I	GAATGC	3 cut(s)	382, 957, 1101
MvaI	CCWGG	1 cut(s)	368
MwoI	GCNNNNNNNGC	5 cut(s)	230, 872, 968, 1011, 1201
NdeII	GATC	2 cut(s)	747, 1059
NlaIII	CATG	2 cut(s)	889, 1316
NlaIV	GGNNCC	1 cut(s)	114
NmuCI	GTSAC	3 cut(s)	217, 791, 1455
PciSI	GCTCTTC	1 cut(s)	714
PctI	GAATGC	3 cut(s)	382, 957, 1101
PfeI	GAWTC	5 cut(s)	131, 541, 550, 634, 859
PfoI	TCCNGGA	1 cut(s)	366
PinAI	ACCGGT	1 cut(s)	402
PkrI	GCNGC	6 cut(s)	46, 280, 868, 871, 874, 1114
PpuMI	RGGWCCY	1 cut(s)	113
PsiI	TTATAA	1 cut(s)	1121
Psp5II	RGGWCCY	1 cut(s)	113
Psp6I	CCWGG	1 cut(s)	366
PspFI	CCCAGC	1 cut(s)	143
PspGI	CCWGG	1 cut(s)	366
PspN4I	GGNNCC	1 cut(s)	114
PspPI	GGNCC	3 cut(s)	113, 152, 287
PspPPI	RGGWCCY	1 cut(s)	113
PsuI	RGATCY	1 cut(s)	1059
PvuII	CAGCTG	2 cut(s)	224, 1382
RsaI	GTAC	3 cut(s)	661, 809, 1298
RsaNI	GTAC	3 cut(s)	660, 808, 1297
RseI	CAYNNNNRTG	1 cut(s)	1341
SapI	GCTCTTC	1 cut(s)	714
SaqAI	TTAA	7 cut(s)	567, 591, 776, 830, 849, 1074, 1371
SatI	GCNGC	6 cut(s)	45, 279, 867, 870, 873, 1113
Sau3AI	GATC	2 cut(s)	747, 1059
Sau96I	GGNCC	3 cut(s)	113, 152, 287
ScrFI	CCNGG	1 cut(s)	368
SduI	GDGCHC	3 cut(s)	267, 1016, 1336
SfaNI	GCATC	4 cut(s)	210, 907, 1333, 1417
SfcI	CTRYAG	2 cut(s)	720, 1089
SinI	GGWCC	1 cut(s)	113
SmiMI	CAYNNNNRTG	1 cut(s)	1341
SmlI	CTYRAG	1 cut(s)	848
SmoI	CTYRAG	1 cut(s)	848
Sse9I	AATT	9 cut(s)	90, 417, 1067, 1075, 1106, 1124, 1372, 1484, 1508
SsiI	CCGC	2 cut(s)	45, 866
SspMI	CTAG	2 cut(s)	578, 789
StyD4I	CCNGG	1 cut(s)	366
TaaI	ACNGT	2 cut(s)	467, 1000
TaqI	TCGA	3 cut(s)	415, 548, 1153
TasI	AATT	9 cut(s)	90, 417, 1067, 1075, 1106, 1124, 1372, 1484, 1508
TauI	GCSGC	2 cut(s)	47, 869
TfiI	GAWTC	5 cut(s)	131, 541, 550, 634, 859
Tru1I	TTAA	7 cut(s)	567, 591, 776, 830, 849, 1074, 1371
Tru9I	TTAA	7 cut(s)	567, 591, 776, 830, 849, 1074, 1371
TscAI	CASTG	3 cut(s)	28, 578, 919
TseFI	GTSAC	3 cut(s)	217, 791, 1455
TseI	GCWGC	4 cut(s)	278, 869, 872, 1112
Tsp45I	GTSAC	3 cut(s)	217, 791, 1455
TspDTI	ATGAA	5 cut(s)	375, 729, 1139, 1301, 1380
TspRI	CASTG	3 cut(s)	28, 578, 919
Vha464I	CTTAAG	1 cut(s)	848
VpaK11BI	GGWCC	1 cut(s)	113
XapI	RAATTY	3 cut(s)	417, 1067, 1106
XmiI	GTMKAC	1 cut(s)	585
XspI	CTAG	2 cut(s)	578, 789

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.