Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003898.1

Orthogroup ID

OG0011098

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1656

Gene Structure 1655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003898.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1470 bp

atggtcagtgatgtcaaggatacagctgctgccaaaccaaacccaaagttgacacttttgcctcttatagctttaattttctatgaggtttctgggggtccttttggagttgaggattcagtcagggctggaggaggccctcttttatcattgcttggtttcttagtgtttcccttgttttggagcattccagaagctttggtgacagctgagcttgccacaagcttccctgaaaatggtggatatgtgctttggatatcagcggctttcgggccattttggggattccaagaggggttttggaaatggtttagtggggttatggacaatgctctttaccctgtcctattcttggattacttgaagcattcatttcccatatttaatcggatggttgctcgaattccagctcttttgggaataacattctcattgacttacttgaattaccgcggactgcatattgtcgggttctctgctgtttcacttgctgttttctcactttgcccatttatcgtgatggctattctttctattcctagaattaggttcaagcagtggctagttgtggactttaagaaggtggagtggaggggatacttcaatagtatgttttggaatctgaattactgggataaggcaagtacccttgcaggggaggttgaaaatccaagcaagacatttccaaaggcgctccttggggctgtagttgtggtggtttgttcatatttgattccacttcttgctggtacaggagccttaaactccccatctagcgagtggactgatgggtactttgcggaagttgggatgttaataggtggcgtttggctcaagtggtggattcaagcagcttctgcaatgtctaacttggggttgttcgaagcagaaatgagcagtgatgcctttcaacttcttgggatgagcgagatgggaatgcttccggctatatttgcttcaaggtctaagtatggaacacctaccataagcattttgtgctctgccaccggagtcatcttcttgtcgtggatgagttttcaggaaatcttggagtttttgaatttcttatacgctataggaatgcttcttgagtttgctgcttttataaaattgagaataaagaagccagaccttcacagaccttaccgagttcccttccagacatttggggtaacaatgctttgcctgcctcccgcattgttgcttattctcgttatgtgcttggcttctctgaggacattcttagtaagtggtgtggtgattatagtgggtcttttgttataccctcttttagctcatgcaaaggaccatggatgggcacagttcgatgcagaacgacccactgaggctcccaagaattgttcggatggcccctctactgtctcacagatgcatcaagaagttcaagatgaatcttctgttagccttctctcagacttgccatctgttaatgcagaacaagaatcttcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015179 GO:0015203 GO:0015291 GO:0015297 GO:0015318 GO:0015711 GO:0015807 GO:0015846 GO:0015849 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1902047 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2

Protein Analysis

490

Amino Acids

54.13

Weight (kDa)

5.48

Isoelectric Point (pI)

34.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19553
fragaria_vesca	FvH4_2g03970
malus_domestica	MD05G1096900.v1.1
prunus_persica	Prupe.8G141300_v2.0.a1 Prupe.8G141300_v2.0.a1 Prupe.8G141300_v2.0.a1
pyrus_communis	pycom05g09560
rosa_chinensis	RchiOBHm_Chr6g0253031 RchiOBHm_Chr6g0253191
rosa_laevigata	RLG00000015042
rosa_multiflora	Rmu_sc0002560.1_g000012 Rmu_sc0003855.1_g000010 Rmu_sc0003898.1_g000001
rosa_roxburghii	Rroxscaffold_7G00212180
rosa_rugosa	Rorug05G0542900
rosa_samantha	Rh6AG056900 Rh6BG051500 Rh6CG049300 Rh6DG045000
rosa_wichuraiana	Rw6G005200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1106
AccII	CGCG	1 cut(s)	453
AciI	CCGC	5 cut(s)	263, 451, 453, 800, 1194
AcsI	RAATTY	2 cut(s)	402, 1060
AfaI	GTAC	3 cut(s)	646, 751, 794
AfiI	CCNNNNNNNGG	7 cut(s)	180, 236, 281, 352, 654, 655, 1315
AluBI	AGCT	9 cut(s)	26, 71, 197, 209, 214, 225, 410, 854, 1295
AluI	AGCT	9 cut(s)	26, 71, 197, 209, 214, 225, 410, 854, 1295
Alw21I	GWGCWC	1 cut(s)	1001
Alw26I	GTCTC	1 cut(s)	1387
AlwNI	CAGNNNCTG	2 cut(s)	29, 857
AoxI	GGCC	3 cut(s)	136, 272, 1369
ApeKI	GCWGC	4 cut(s)	26, 29, 851, 1097
ApoI	RAATTY	2 cut(s)	402, 1060
AspLEI	GCGC	1 cut(s)	694
AspS9I	GGNCC	5 cut(s)	98, 137, 272, 1306, 1370
AsuHPI	GGTGA	2 cut(s)	214, 1270
AsuII	TTCGAA	1 cut(s)	882
AvaII	GGWCC	2 cut(s)	98, 1306
BaeGI	GKGCMC	1 cut(s)	1321
Bbv12I	GWGCWC	1 cut(s)	1001
BbvI	GCAGC	4 cut(s)	13, 16, 863, 1084
BccI	CCATC	8 cut(s)	385, 514, 778, 782, 925, 1308, 1361, 1450
BciVI	GTATCC	2 cut(s)	13, 590
BcoDI	GTCTC	1 cut(s)	1387
BfaI	CTAG	3 cut(s)	540, 563, 774
BfmI	CTRYAG	2 cut(s)	705, 1074
BfoI	RGCGCY	1 cut(s)	695
BfuI	GTATCC	2 cut(s)	13, 590
BisI	GCNGC	5 cut(s)	27, 30, 264, 852, 1098
BlpI	GCTNAGC	1 cut(s)	210
BlsI	GCNGC	5 cut(s)	28, 31, 265, 853, 1099
Bme18I	GGWCC	2 cut(s)	98, 1306
BmgT120I	GGNCC	5 cut(s)	98, 137, 272, 1306, 1370
BmiI	GGNNCC	4 cut(s)	99, 757, 1350, 1372
BmrI	ACTGGG	1 cut(s)	640
BmsI	GCATC	4 cut(s)	892, 1318, 1380, 1402
BmuI	ACTGGG	1 cut(s)	640
BpmI	CTGGAG	1 cut(s)	150
Bpu1102I	GCTNAGC	1 cut(s)	210
Bpu14I	TTCGAA	1 cut(s)	882
BpuEI	CTTGAG	2 cut(s)	818, 1109
BsaJI	CCNNGG	3 cut(s)	451, 697, 1309
BsaWI	WCCGGW	1 cut(s)	1007
BsaXI	ACNNNNNCTCC	2 cut(s)	1333, 1363
Bsc4I	CCNNNNNNNGG	7 cut(s)	180, 236, 281, 352, 654, 655, 1315
Bse1I	ACTGG	1 cut(s)	635
Bse3DI	GCAATG	2 cut(s)	149, 867
BseDI	CCNNGG	3 cut(s)	451, 697, 1309
BseGI	GGATG	6 cut(s)	396, 816, 927, 1035, 1319, 1372
BseLI	CCNNNNNNNGG	7 cut(s)	180, 236, 281, 352, 654, 655, 1315
BseMI	GCAATG	2 cut(s)	149, 867
BseMII	CTCAG	4 cut(s)	201, 1223, 1335, 1446
BseNI	ACTGG	1 cut(s)	635
BseRI	GAGGAG	1 cut(s)	147
BseSI	GKGCMC	1 cut(s)	1321
BseXI	GCAGC	4 cut(s)	13, 16, 863, 1084
Bsh1236I	CGCG	1 cut(s)	453
BshFI	GGCC	3 cut(s)	138, 274, 1371
BsiHKAI	GWGCWC	1 cut(s)	1001
BsiSI	CCGG	2 cut(s)	944, 1008
BslI	CCNNNNNNNGG	7 cut(s)	180, 236, 281, 352, 654, 655, 1315
BsmAI	GTCTC	1 cut(s)	1387
BsmI	GAATGC	4 cut(s)	186, 367, 942, 1086
BsnI	GGCC	3 cut(s)	138, 274, 1371
Bsp119I	TTCGAA	1 cut(s)	882
Bsp1286I	GDGCHC	2 cut(s)	1001, 1321
Bsp1720I	GCTNAGC	1 cut(s)	210
Bsp19I	CCATGG	1 cut(s)	1309
BspACI	CCGC	5 cut(s)	263, 451, 453, 800, 1194
BspANI	GGCC	3 cut(s)	138, 274, 1371
BspCNI	CTCAG	4 cut(s)	202, 1224, 1336, 1445
BspFNI	CGCG	1 cut(s)	453
BspLI	GGNNCC	4 cut(s)	99, 757, 1350, 1372
BspT104I	TTCGAA	1 cut(s)	882
BsrDI	GCAATG	2 cut(s)	149, 867
BsrI	ACTGG	1 cut(s)	635
BssECI	CCNNGG	3 cut(s)	451, 697, 1309
BssT1I	CCWWGG	2 cut(s)	697, 1309
Bst4CI	ACNGT	2 cut(s)	1323, 1381
BstAPI	GCANNNNNTGC	2 cut(s)	857, 996
BstBI	TTCGAA	1 cut(s)	882
BstC8I	GCNNGC	2 cut(s)	216, 1187
BstDEI	CTNAG	7 cut(s)	163, 210, 966, 1232, 1243, 1344, 1432
BstDSI	CCRYGG	2 cut(s)	451, 1309
BstF5I	GGATG	6 cut(s)	396, 816, 927, 1035, 1319, 1372
BstFNI	CGCG	1 cut(s)	453
BstH2I	RGCGCY	1 cut(s)	695
BstHHI	GCGC	1 cut(s)	694
BstMAI	GTCTC	1 cut(s)	1387
BstMWI	GCNNNNNNNGC	5 cut(s)	215, 857, 953, 996, 1186
BstSFI	CTRYAG	2 cut(s)	705, 1074
BstSLI	GKGCMC	1 cut(s)	1321
BstUI	CGCG	1 cut(s)	453
BstV1I	GCAGC	4 cut(s)	13, 16, 863, 1084
BstXI	CCANNNNNNTGG	1 cut(s)	1166
BsuI	GTATCC	2 cut(s)	13, 590
BsuRI	GGCC	3 cut(s)	138, 274, 1371
BtgI	CCRYGG	2 cut(s)	451, 1309
BtsCI	GGATG	6 cut(s)	396, 816, 927, 1035, 1319, 1372
BtsI	GCAGTG	2 cut(s)	563, 904
BtsIMutI	CAGTG	4 cut(s)	13, 563, 904, 1341
Cac8I	GCNNGC	2 cut(s)	216, 1187
CaiI	CAGNNNCTG	2 cut(s)	29, 857
CfoI	GCGC	1 cut(s)	694
Cfr13I	GGNCC	5 cut(s)	98, 137, 272, 1306, 1370
Cfr42I	CCGCGG	1 cut(s)	454
Csp6I	GTAC	3 cut(s)	645, 750, 793
CviAII	CATG	2 cut(s)	1298, 1310
CviQI	GTAC	3 cut(s)	645, 750, 793
DdeI	CTNAG	7 cut(s)	163, 210, 966, 1232, 1243, 1344, 1432
Eco130I	CCWWGG	2 cut(s)	697, 1309
Eco32I	GATATC	1 cut(s)	258
Eco47I	GGWCC	2 cut(s)	98, 1306
EcoO109I	RGGNCCY	2 cut(s)	98, 137
EcoRI	GAATTC	1 cut(s)	402
EcoRV	GATATC	1 cut(s)	258
EcoT14I	CCWWGG	2 cut(s)	697, 1309
EcoT22I	ATGCAT	1 cut(s)	1395
ErhI	CCWWGG	2 cut(s)	697, 1309
FaeI	CATG	2 cut(s)	1301, 1313
FatI	CATG	2 cut(s)	1297, 1309
FauI	CCCGC	1 cut(s)	1201
Fnu4HI	GCNGC	5 cut(s)	27, 30, 264, 852, 1098
FokI	GGATG	6 cut(s)	403, 823, 934, 1042, 1326, 1379
Fsp4HI	GCNGC	5 cut(s)	27, 30, 264, 852, 1098
FspBI	CTAG	3 cut(s)	540, 563, 774
GlaI	GCGC	1 cut(s)	693
GluI	GCNGC	5 cut(s)	27, 30, 264, 852, 1098
GsuI	CTGGAG	1 cut(s)	150
HaeII	RGCGCY	1 cut(s)	695
HaeIII	GGCC	3 cut(s)	138, 274, 1371
HapII	CCGG	2 cut(s)	944, 1008
HhaI	GCGC	1 cut(s)	694
Hin1II	CATG	2 cut(s)	1301, 1313
Hin6I	GCGC	1 cut(s)	692
HinP1I	GCGC	1 cut(s)	692
HincII	GTYRAC	1 cut(s)	51
HindII	GTYRAC	1 cut(s)	51
HindIII	AAGCTT	2 cut(s)	195, 223
HinfI	GANTC	8 cut(s)	116, 285, 619, 733, 844, 1011, 1412, 1463
HpaII	CCGG	2 cut(s)	944, 1008
HphI	GGTGA	2 cut(s)	214, 1270
Hpy166II	GTNNAC	3 cut(s)	51, 571, 783
Hpy188I	TCNGA	5 cut(s)	390, 624, 1233, 1366, 1435
Hpy188III	TCNNGA	7 cut(s)	191, 517, 1040, 1088, 1159, 1397, 1406
Hpy8I	GTNNAC	3 cut(s)	51, 571, 783
HpyAV	CCTTC	4 cut(s)	574, 1142, 1165, 1436
HpyCH4III	ACNGT	2 cut(s)	1323, 1381
HpyCH4V	TGCA	7 cut(s)	460, 653, 860, 1301, 1331, 1393, 1454
HpyF10VI	GCNNNNNNNGC	5 cut(s)	215, 857, 953, 996, 1186
HpyF3I	CTNAG	7 cut(s)	163, 210, 966, 1232, 1243, 1344, 1432
Hsp92II	CATG	2 cut(s)	1301, 1313
HspAI	GCGC	1 cut(s)	692
KspI	CCGCGG	1 cut(s)	454
LmnI	GCTCC	4 cut(s)	183, 699, 755, 1354
Lsp1109I	GCAGC	4 cut(s)	13, 16, 863, 1084
LweI	GCATC	4 cut(s)	892, 1318, 1380, 1402
MaeI	CTAG	3 cut(s)	540, 563, 774
MaeIII	GTNAC	2 cut(s)	202, 1171
MboII	GAAGA	3 cut(s)	1009, 1407, 1458
MhlI	GDGCHC	2 cut(s)	1001, 1321
MluCI	AATT	8 cut(s)	75, 402, 445, 543, 625, 1060, 1109, 1357
MlyI	GAGTC	1 cut(s)	1020
Mph1103I	ATGCAT	1 cut(s)	1395
MseI	TTAA	6 cut(s)	74, 384, 576, 761, 815, 1449
MspA1I	CMGCKG	4 cut(s)	26, 209, 263, 453
MspI	CCGG	2 cut(s)	944, 1008
Mva1269I	GAATGC	4 cut(s)	186, 367, 942, 1086
MvnI	CGCG	1 cut(s)	453
MwoI	GCNNNNNNNGC	5 cut(s)	215, 857, 953, 996, 1186
NcoI	CCATGG	1 cut(s)	1309
NlaIII	CATG	2 cut(s)	1301, 1313
NlaIV	GGNNCC	4 cut(s)	99, 757, 1350, 1372
NmuCI	GTSAC	1 cut(s)	202
NsiI	ATGCAT	1 cut(s)	1395
NspV	TTCGAA	1 cut(s)	882
PctI	GAATGC	4 cut(s)	186, 367, 942, 1086
PfeI	GAWTC	7 cut(s)	116, 285, 619, 733, 844, 1412, 1463
PkrI	GCNGC	5 cut(s)	28, 31, 265, 853, 1099
PleI	GAGTC	1 cut(s)	1019
PpsI	GAGTC	1 cut(s)	1019
PpuMI	RGGWCCY	1 cut(s)	98
PsiI	TTATAA	1 cut(s)	1106
Psp5II	RGGWCCY	1 cut(s)	98
PspN4I	GGNNCC	4 cut(s)	99, 757, 1350, 1372
PspPI	GGNCC	5 cut(s)	98, 137, 272, 1306, 1370
PspPPI	RGGWCCY	1 cut(s)	98
PstNI	CAGNNNCTG	2 cut(s)	29, 857
PvuII	CAGCTG	2 cut(s)	26, 209
RsaI	GTAC	3 cut(s)	646, 751, 794
RsaNI	GTAC	3 cut(s)	645, 750, 793
SacII	CCGCGG	1 cut(s)	454
SaqAI	TTAA	6 cut(s)	74, 384, 576, 761, 815, 1449
SatI	GCNGC	5 cut(s)	27, 30, 264, 852, 1098
Sau96I	GGNCC	5 cut(s)	98, 137, 272, 1306, 1370
SchI	GAGTC	1 cut(s)	1020
SduI	GDGCHC	2 cut(s)	1001, 1321
SfaNI	GCATC	4 cut(s)	892, 1318, 1380, 1402
SfcI	CTRYAG	2 cut(s)	705, 1074
Sfr303I	CCGCGG	1 cut(s)	454
SfuI	TTCGAA	1 cut(s)	882
SgrBI	CCGCGG	1 cut(s)	454
SinI	GGWCC	2 cut(s)	98, 1306
SmlI	CTYRAG	2 cut(s)	833, 1088
SmoI	CTYRAG	2 cut(s)	833, 1088
Sse9I	AATT	8 cut(s)	75, 402, 445, 543, 625, 1060, 1109, 1357
SsiI	CCGC	5 cut(s)	263, 451, 453, 800, 1194
SspMI	CTAG	3 cut(s)	540, 563, 774
StyI	CCWWGG	2 cut(s)	697, 1309
TaaI	ACNGT	2 cut(s)	1323, 1381
TaqI	TCGA	3 cut(s)	400, 882, 1326
TasI	AATT	8 cut(s)	75, 402, 445, 543, 625, 1060, 1109, 1357
TauI	GCSGC	1 cut(s)	266
TfiI	GAWTC	7 cut(s)	116, 285, 619, 733, 844, 1412, 1463
Tru1I	TTAA	6 cut(s)	74, 384, 576, 761, 815, 1449
Tru9I	TTAA	6 cut(s)	74, 384, 576, 761, 815, 1449
TscAI	CASTG	4 cut(s)	13, 563, 904, 1348
TseFI	GTSAC	1 cut(s)	202
TseI	GCWGC	4 cut(s)	26, 29, 851, 1097
Tsp45I	GTSAC	1 cut(s)	202
TspDTI	ATGAA	3 cut(s)	360, 714, 1425
TspRI	CASTG	4 cut(s)	13, 563, 904, 1348
VpaK11BI	GGWCC	2 cut(s)	98, 1306
XapI	RAATTY	2 cut(s)	402, 1060
XcmI	CCANNNNNNNNNTGG	1 cut(s)	777
XspI	CTAG	3 cut(s)	540, 563, 774
Zsp2I	ATGCAT	1 cut(s)	1395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.