AT3G20070

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0006259
Physical Location & Seq
Reverse (-)
7004672 .. 7006941
2270 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G20070.1

Sequence Viewer

Length: 849 bp
ATGGAAGCTCTCTACGCCAAGCTCTACGACAAATACACCAAACTCCAGAAGAAGAAATATTCCGAATACGATGAGATTAATAAGGAACAAGAAGAGAAATTCCTTACCTTTGTTTCAGCCTCAGAGGAGTTGATGGAACATTTGAGAGGTGAAAATCAGAGTTCTCTGGAGATGGTTGAGAAGTTGAGGAATGAAATCATTTCAATCAGATCTGGCAGGGACGACAAGTTTCTGGAGTGTCAAAAGCTTCTCATGGAAGAAGAACTAAAGAACAAATCACTTTCTGAAGAAGTTGTCAAGCTAAAAGAGCTGGTCCAAGAGGAACATCCTCGCAACTATGAAGATCAAAGTGGAAAAAAACAAAAGAGAAAGACTCCTGAAAGTGCTCGAGTTACAACGAGAAGCATGATAAAACGTAGCAGACTGTCAGAAGATTTGGTGGAAACGGATATGGTATCACCTGACATTAGCAAACATCATAAAGCAAAGGAGCCTCTCTTGGTTTCTCAGCCACAATGCTGCAGAACAACCTACGATGGATCAAGTAGTTCTGCTAGTTGTACATTTCAAGCTCTTGGCAAACACTTGCTAGGAATGAAATTATCAACTAATAATAAGGGCAAACGCGCCTGCATTGTAGCCTCACACCCAACAACCGGTTTATCCTTCAGCCTAACTTTTATAAATAACCCAAATGGTGAAGAATCTGAGCTGCTTTACAAGCCTGCATCACTCGGAACATTTCAAAGAGTGGCACCGGAATGGATGAGAGAAGTTATAAAGTTCAGCACAAGTATGTGTCCCATCTTCTTTGAAAGAGTCTCTCGAGTCATTAAGCTCAATTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

282

Amino Acids

32.47

Weight (kDa)

8.53

Isoelectric Point (pI)

56.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7806 PF25091 185 - 279 4.1e-40 Domain of unknown function (DUF7806)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 683, 779
AccB1I GGYRCC 1 cut(s) 754
AccII CGCG 1 cut(s) 627
AclWI GGATC 1 cut(s) 547
AcsI RAATTY 1 cut(s) 98
AcuI CTGAAG 2 cut(s) 306, 652
AfaI GTAC 1 cut(s) 562
AfiI CCNNNNNNNGG 1 cut(s) 656
AgeI ACCGGT 1 cut(s) 656
AgsI TTSAA 4 cut(s) 204, 569, 746, 815
AluBI AGCT 8 cut(s) 8, 22, 247, 301, 310, 572, 712, 838
AluI AGCT 8 cut(s) 8, 22, 247, 301, 310, 572, 712, 838
Alw21I GWGCWC 1 cut(s) 388
Alw26I GTCTC 1 cut(s) 826
AlwI GGATC 1 cut(s) 547
Ama87I CYCGRG 2 cut(s) 387, 825
ApeKI GCWGC 2 cut(s) 519, 712
ApoI RAATTY 1 cut(s) 98
AseI ATTAAT 1 cut(s) 78
AsiGI ACCGGT 1 cut(s) 656
AspLEI GCGC 1 cut(s) 629
AspS9I GGNCC 1 cut(s) 313
AsuHPI GGTGA 3 cut(s) 161, 450, 710
AvaI CYCGRG 2 cut(s) 387, 825
AvaII GGWCC 1 cut(s) 313
BanI GGYRCC 1 cut(s) 754
Bbv12I GWGCWC 1 cut(s) 388
BbvI GCAGC 2 cut(s) 506, 699
BccI CCATC 4 cut(s) 127, 166, 530, 812
BcoDI GTCTC 1 cut(s) 826
BfaI CTAG 2 cut(s) 555, 590
BfmI CTRYAG 1 cut(s) 520
BglII AGATCT 1 cut(s) 209
BisI GCNGC 2 cut(s) 520, 713
BlsI GCNGC 2 cut(s) 521, 714
Bme18I GGWCC 1 cut(s) 313
BmeT110I CYCGRG 2 cut(s) 387, 825
BmgT120I GGNCC 1 cut(s) 313
BmiI GGNNCC 2 cut(s) 492, 756
BmsI GCATC 1 cut(s) 737
BplI GAGNNNNNCTC 2 cut(s) 358, 390
BpmI CTGGAG 3 cut(s) 29, 188, 254
BsaWI WCCGGW 2 cut(s) 656, 757
Bsc4I CCNNNNNNNGG 1 cut(s) 656
Bse118I RCCGGY 1 cut(s) 656
BseGI GGATG 2 cut(s) 325, 771
BseLI CCNNNNNNNGG 1 cut(s) 656
BseMII CTCAG 3 cut(s) 135, 521, 699
BseRI GAGGAG 1 cut(s) 140
BseXI GCAGC 2 cut(s) 506, 699
Bsh1236I CGCG 1 cut(s) 627
BshNI GGYRCC 1 cut(s) 754
BshTI ACCGGT 1 cut(s) 656
BsiHKAI GWGCWC 1 cut(s) 388
BsiHKCI CYCGRG 2 cut(s) 387, 825
BsiSI CCGG 2 cut(s) 657, 758
BslFI GGGAC 2 cut(s) 233, 786
BslI CCNNNNNNNGG 1 cut(s) 656
BsmAI GTCTC 1 cut(s) 826
BsmFI GGGAC 2 cut(s) 233, 786
BsoBI CYCGRG 2 cut(s) 387, 825
Bsp1286I GDGCHC 1 cut(s) 388
Bsp1407I TGTACA 1 cut(s) 560
Bsp143I GATC 3 cut(s) 209, 343, 539
BspCNI CTCAG 3 cut(s) 134, 520, 700
BspFNI CGCG 1 cut(s) 627
BspLI GGNNCC 2 cut(s) 492, 756
BspMAI CTGCAG 1 cut(s) 524
BspPI GGATC 1 cut(s) 547
BspT107I GGYRCC 1 cut(s) 754
BsrFI RCCGGY 1 cut(s) 656
BsrGI TGTACA 1 cut(s) 560
BssAI RCCGGY 1 cut(s) 656
BssMI GATC 3 cut(s) 209, 343, 539
Bst4CI ACNGT 1 cut(s) 426
Bst6I CTCTTC 1 cut(s) 87
BstAUI TGTACA 1 cut(s) 560
BstC8I GCNNGC 2 cut(s) 631, 726
BstDEI CTNAG 3 cut(s) 121, 507, 708
BstF5I GGATG 2 cut(s) 325, 771
BstFNI CGCG 1 cut(s) 627
BstHHI GCGC 1 cut(s) 629
BstKTI GATC 3 cut(s) 212, 346, 542
BstMAI GTCTC 1 cut(s) 826
BstMBI GATC 3 cut(s) 209, 343, 539
BstMWI GCNNNNNNNGC 3 cut(s) 14, 307, 721
BstSFI CTRYAG 1 cut(s) 520
BstUI CGCG 1 cut(s) 627
BstV1I GCAGC 2 cut(s) 506, 699
BstX2I RGATCY 1 cut(s) 209
BstYI RGATCY 1 cut(s) 209
BtsCI GGATG 2 cut(s) 325, 771
Cac8I GCNNGC 2 cut(s) 631, 726
CfoI GCGC 1 cut(s) 629
Cfr10I RCCGGY 1 cut(s) 656
Cfr13I GGNCC 1 cut(s) 313
Csp6I GTAC 1 cut(s) 561
CspAI ACCGGT 1 cut(s) 656
CviAII CATG 2 cut(s) 253, 406
CviQI GTAC 1 cut(s) 561
DdeI CTNAG 3 cut(s) 121, 507, 708
DpnI GATC 3 cut(s) 211, 345, 541
DpnII GATC 3 cut(s) 209, 343, 539
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
Eco47I GGWCC 1 cut(s) 313
Eco57I CTGAAG 2 cut(s) 306, 652
Eco88I CYCGRG 2 cut(s) 387, 825
FaeI CATG 2 cut(s) 256, 409
FaiI YATR 8 cut(s) 254, 339, 407, 452, 480, 683, 779, 797
FaqI GGGAC 2 cut(s) 233, 786
FatI CATG 2 cut(s) 252, 405
Fnu4HI GCNGC 2 cut(s) 520, 713
FokI GGATG 2 cut(s) 312, 778
Fsp4HI GCNGC 2 cut(s) 520, 713
FspBI CTAG 2 cut(s) 555, 590
GlaI GCGC 1 cut(s) 628
GluI GCNGC 2 cut(s) 520, 713
GsuI CTGGAG 3 cut(s) 29, 188, 254
HapII CCGG 2 cut(s) 657, 758
HhaI GCGC 1 cut(s) 629
Hin1II CATG 2 cut(s) 256, 409
Hin6I GCGC 1 cut(s) 627
HinP1I GCGC 1 cut(s) 627
HindIII AAGCTT 1 cut(s) 245
HinfI GANTC 4 cut(s) 373, 704, 819, 828
HpaII CCGG 2 cut(s) 657, 758
HphI GGTGA 3 cut(s) 161, 450, 710
Hpy188I TCNGA 8 cut(s) 64, 124, 159, 209, 286, 430, 709, 737
Hpy188III TCNNGA 5 cut(s) 46, 167, 233, 377, 825
HpyAV CCTTC 1 cut(s) 676
HpyCH4III ACNGT 1 cut(s) 426
HpyCH4IV ACGT 1 cut(s) 415
HpyCH4V TGCA 3 cut(s) 522, 633, 728
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 307, 721
HpyF3I CTNAG 3 cut(s) 121, 507, 708
HpySE526I ACGT 1 cut(s) 415
Hsp92II CATG 2 cut(s) 256, 409
HspAI GCGC 1 cut(s) 627
Kzo9I GATC 3 cut(s) 209, 343, 539
LmnI GCTCC 1 cut(s) 490
Lsp1109I GCAGC 2 cut(s) 506, 699
LweI GCATC 1 cut(s) 737
MaeI CTAG 2 cut(s) 555, 590
MaeII ACGT 1 cut(s) 415
MaeIII GTNAC 1 cut(s) 391
MalI GATC 3 cut(s) 211, 345, 541
MboI GATC 3 cut(s) 209, 343, 539
MfeI CAATTG 1 cut(s) 841
MflI RGATCY 1 cut(s) 209
MhlI GDGCHC 1 cut(s) 388
MluCI AATT 3 cut(s) 98, 599, 841
MlyI GAGTC 3 cut(s) 367, 828, 837
MnlI CCTC 8 cut(s) 118, 130, 140, 180, 313, 339, 504, 652
MseI TTAA 2 cut(s) 78, 834
MslI CAYNNNNRTG 2 cut(s) 760, 794
MspI CCGG 2 cut(s) 657, 758
MunI CAATTG 1 cut(s) 841
MvnI CGCG 1 cut(s) 627
MwoI GCNNNNNNNGC 3 cut(s) 14, 307, 721
NdeII GATC 3 cut(s) 209, 343, 539
NlaIII CATG 2 cut(s) 256, 409
NlaIV GGNNCC 2 cut(s) 492, 756
PaeR7I CTCGAG 2 cut(s) 387, 825
PfeI GAWTC 1 cut(s) 704
PinAI ACCGGT 1 cut(s) 656
PkrI GCNGC 2 cut(s) 521, 714
PleI GAGTC 3 cut(s) 367, 827, 836
PpsI GAGTC 3 cut(s) 367, 827, 836
PshBI ATTAAT 1 cut(s) 78
PsiI TTATAA 2 cut(s) 683, 779
PspN4I GGNNCC 2 cut(s) 492, 756
PspPI GGNCC 1 cut(s) 313
PspXI VCTCGAGB 1 cut(s) 387
PstI CTGCAG 1 cut(s) 524
PsuI RGATCY 1 cut(s) 209
RsaI GTAC 1 cut(s) 562
RsaNI GTAC 1 cut(s) 561
RseI CAYNNNNRTG 2 cut(s) 760, 794
SaqAI TTAA 2 cut(s) 78, 834
SatI GCNGC 2 cut(s) 520, 713
Sau3AI GATC 3 cut(s) 209, 343, 539
Sau96I GGNCC 1 cut(s) 313
SchI GAGTC 3 cut(s) 367, 828, 837
SduI GDGCHC 1 cut(s) 388
SfaNI GCATC 1 cut(s) 737
SfcI CTRYAG 1 cut(s) 520
Sfr274I CTCGAG 2 cut(s) 387, 825
SinI GGWCC 1 cut(s) 313
SlaI CTCGAG 2 cut(s) 387, 825
SmiMI CAYNNNNRTG 2 cut(s) 760, 794
SmlI CTYRAG 2 cut(s) 387, 825
SmoI CTYRAG 2 cut(s) 387, 825
Sse9I AATT 3 cut(s) 98, 599, 841
SspI AATATT 1 cut(s) 59
SspMI CTAG 2 cut(s) 555, 590
TaaI ACNGT 1 cut(s) 426
TaiI ACGT 1 cut(s) 418
TaqI TCGA 2 cut(s) 388, 826
TasI AATT 3 cut(s) 98, 599, 841
TatI WGTACW 1 cut(s) 560
TfiI GAWTC 1 cut(s) 704
Tru1I TTAA 2 cut(s) 78, 834
Tru9I TTAA 2 cut(s) 78, 834
TseI GCWGC 2 cut(s) 519, 712
TspDTI ATGAA 3 cut(s) 207, 354, 611
TspGWI ACGGA 1 cut(s) 461
VpaK11BI GGWCC 1 cut(s) 313
VspI ATTAAT 1 cut(s) 78
XapI RAATTY 1 cut(s) 98
XhoI CTCGAG 2 cut(s) 387, 825
XspI CTAG 2 cut(s) 555, 590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.