RLG00000034761

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0006259
Physical Location & Seq
Forward (+)
54015573 .. 54020678
5106 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034761

Sequence Viewer

Length: 1101 bp
ATGGATGCTCTCTATTCAAAGCTCTACGACAAGTACTCCAAAATCAAGGCCAAAAAGTTTTCCGAATTGGATCAACAAAATAAAGATCAAGAAGACAAGTTTTTGAACTATATCCAAGTTGCGGAGGAGTACATTCAACATGTGAAAAGTGAAAATGAGCAGTTGCATTTGCAGCTTAATGAGCTTAGAAGTGAAGTGGCTTCTCTCAGGTCCGCAAAAGATGAACAATGTACTGAGTACCAGAAGCTTTTGATGGAAGAAAACAGGAAAAATAAAGAGCTTTCTGAAGAAGTAACAAAGCTCCAAAAGATGCTACAGGCGGAAACCTTTAGCAGAAGGAAGGATAGCAACACAGACAATGAGGAATTATGTATGTCTGGTGGTGGTGAAGTATCAAGAGAGCCTGGCAATAGCTCAAAGAGAAGAGATACAAATAAACGTAAGAGGCATTCTGGGGCAGAGACAGGGGACATCAATATGCCTCTTAGGAGCCATGATGATAGTGCAATACCAAGAGAATCTGCAAAGGACTTGCACAAGGAAACTGTGCATAGGGAATCTGTTGTTGGTTCTCCTAAGGTATTTTTGATAAATTCCCATATATTTAAATATCTGGAGCAGATACTTATGTCTTCACTTTCACTGACCAATGTAAACTTTCAGCCACAGTGCTGTAGAAATCTTGAAGGATCAGGTATGTGTCTGGAATTGAAGATCATGTCATTTTCCTTGTTCTGTTGTTCATATGGTATTGCAAGATTTAATGCGTGGTATACTTGGTTTCTAGGTGGCAGTGTGGCTGTCACATCTAACTGCCTGTTTCAAGAGCTGAATGAGTTCGTGTGGGGCTTAAAGTTCTCCATTGTTGATCAAACTGAAGAAACATGCATTTCAGCAGTGCATCAATCAAGCGGTTACTCCTTCACTCTGACTTGGGTGAACAGAGCTACAGGGGAGAGGCCAGAACTAGTGTACCGTTGTTTATCCTTGGGGACTTTTGAGAGGGTAGCGCCAGAGTGGATGACTGACGAGCTTATGTTTAGCACAACCATGTGCCCTATCTTCTTCGAAAGGGTATCCCGTGTTGTTAAGATGTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

367

Amino Acids

42.25

Weight (kDa)

6.0

Isoelectric Point (pI)

53.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7806 PF25091 270 - 364 1.6e-44 Domain of unknown function (DUF7806)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 773
AciI CCGC 4 cut(s) 122, 213, 320, 912
AclWI GGATC 2 cut(s) 78, 697
AcsI RAATTY 1 cut(s) 592
AcuI CTGAAG 2 cut(s) 306, 897
AfaI GTAC 5 cut(s) 35, 131, 232, 239, 974
AfiI CCNNNNNNNGG 1 cut(s) 121
AflIII ACRYGT 1 cut(s) 139
AgsI TTSAA 6 cut(s) 18, 106, 137, 686, 712, 824
AhlI ACTAGT 1 cut(s) 967
AjnI CCWGG 1 cut(s) 403
AjuI GAANNNNNNNTTGG 2 cut(s) 549, 581
Alw26I GTCTC 1 cut(s) 455
AlwI GGATC 2 cut(s) 78, 697
AoxI GGCC 2 cut(s) 48, 959
ApeKI GCWGC 1 cut(s) 172
ApoI RAATTY 1 cut(s) 592
Asp700I GAANNNNTTC 1 cut(s) 836
AspLEI GCGC 1 cut(s) 1012
AspS9I GGNCC 1 cut(s) 210
AsuHPI GGTGA 2 cut(s) 398, 949
AsuII TTCGAA 1 cut(s) 1068
AvaII GGWCC 1 cut(s) 210
AxyI CCTNAGG 1 cut(s) 576
BaeGI GKGCMC 1 cut(s) 1058
BaeI ACNNNNGTAYC 4 cut(s) 614, 647, 956, 989
BbsI GAAGAC 2 cut(s) 99, 624
BbvI GCAGC 1 cut(s) 184
BccI CCATC 1 cut(s) 247
BciT130I CCWGG 1 cut(s) 405
BciVI GTATCC 1 cut(s) 1087
BclI TGATCA 1 cut(s) 868
BcoDI GTCTC 1 cut(s) 455
BcuI ACTAGT 1 cut(s) 967
BfaI CTAG 3 cut(s) 785, 968, 1099
BfmI CTRYAG 3 cut(s) 314, 673, 948
BfoI RGCGCY 1 cut(s) 1013
BfuI GTATCC 1 cut(s) 1087
BisI GCNGC 1 cut(s) 173
BlsI GCNGC 1 cut(s) 174
BmcAI AGTACT 1 cut(s) 35
Bme1390I CCNGG 1 cut(s) 405
Bme18I GGWCC 1 cut(s) 210
BmgT120I GGNCC 1 cut(s) 210
BmiI GGNNCC 1 cut(s) 491
BmrFI CCNGG 1 cut(s) 405
BmsI GCATC 2 cut(s) 300, 910
BpiI GAAGAC 2 cut(s) 99, 624
BpmI CTGGAG 1 cut(s) 635
Bpu14I TTCGAA 1 cut(s) 1068
BsaJI CCNNGG 1 cut(s) 987
BsaXI ACNNNNNCTCC 2 cut(s) 20, 50
Bsc4I CCNNNNNNNGG 1 cut(s) 121
Bse21I CCTNAGG 1 cut(s) 576
BseBI CCWGG 1 cut(s) 405
BseDI CCNNGG 1 cut(s) 987
BseGI GGATG 2 cut(s) 10, 1026
BseLI CCNNNNNNNGG 1 cut(s) 121
BseMII CTCAG 2 cut(s) 220, 225
BseRI GAGGAG 1 cut(s) 140
BseSI GKGCMC 1 cut(s) 1058
BseXI GCAGC 1 cut(s) 184
BshFI GGCC 2 cut(s) 50, 961
BslFI GGGAC 2 cut(s) 482, 1006
BslI CCNNNNNNNGG 1 cut(s) 121
BsmAI GTCTC 1 cut(s) 455
BsmFI GGGAC 2 cut(s) 482, 1006
BsmI GAATGC 1 cut(s) 448
BsnI GGCC 2 cut(s) 50, 961
Bsp119I TTCGAA 1 cut(s) 1068
Bsp1286I GDGCHC 1 cut(s) 1058
Bsp143I GATC 5 cut(s) 70, 85, 689, 714, 868
BspACI CCGC 4 cut(s) 122, 213, 320, 912
BspANI GGCC 2 cut(s) 50, 961
BspCNI CTCAG 2 cut(s) 219, 226
BspLI GGNNCC 1 cut(s) 491
BspPI GGATC 2 cut(s) 78, 697
BspT104I TTCGAA 1 cut(s) 1068
BssECI CCNNGG 1 cut(s) 987
BssMI GATC 5 cut(s) 70, 85, 689, 714, 868
BssNAI GTATAC 1 cut(s) 774
BssT1I CCWWGG 1 cut(s) 987
Bst1107I GTATAC 1 cut(s) 774
Bst2UI CCWGG 1 cut(s) 405
Bst4CI ACNGT 3 cut(s) 547, 669, 977
Bst6I CTCTTC 1 cut(s) 418
BstBI TTCGAA 1 cut(s) 1068
BstDEI CTNAG 5 cut(s) 185, 206, 234, 485, 576
BstF5I GGATG 2 cut(s) 10, 1026
BstH2I RGCGCY 1 cut(s) 1013
BstHHI GCGC 1 cut(s) 1012
BstKTI GATC 5 cut(s) 73, 88, 692, 717, 871
BstMAI GTCTC 1 cut(s) 455
BstMBI GATC 5 cut(s) 70, 85, 689, 714, 868
BstMWI GCNNNNNNNGC 2 cut(s) 172, 181
BstNI CCWGG 1 cut(s) 405
BstNSI RCATGY 2 cut(s) 143, 888
BstSCI CCNGG 1 cut(s) 403
BstSFI CTRYAG 3 cut(s) 314, 673, 948
BstSLI GKGCMC 1 cut(s) 1058
BstV1I GCAGC 1 cut(s) 184
BstV2I GAAGAC 2 cut(s) 99, 624
BstZ17I GTATAC 1 cut(s) 774
Bsu36I CCTNAGG 1 cut(s) 576
BsuI GTATCC 1 cut(s) 1087
BsuRI GGCC 2 cut(s) 50, 961
BtsCI GGATG 2 cut(s) 10, 1026
BtsI GCAGTG 2 cut(s) 799, 903
BtsIMutI CAGTG 4 cut(s) 641, 674, 799, 903
CfoI GCGC 1 cut(s) 1012
Cfr13I GGNCC 1 cut(s) 210
Csp6I GTAC 5 cut(s) 34, 130, 231, 238, 973
CviAII CATG 5 cut(s) 140, 494, 718, 885, 1051
CviQI GTAC 5 cut(s) 34, 130, 231, 238, 973
DdeI CTNAG 5 cut(s) 185, 206, 234, 485, 576
DpnI GATC 5 cut(s) 72, 87, 691, 716, 870
DpnII GATC 5 cut(s) 70, 85, 689, 714, 868
DraI TTTAAA 1 cut(s) 607
Eam1104I CTCTTC 1 cut(s) 418
EarI CTCTTC 1 cut(s) 418
EciI GGCGGA 1 cut(s) 335
Eco130I CCWWGG 1 cut(s) 987
Eco47I GGWCC 1 cut(s) 210
Eco57I CTGAAG 2 cut(s) 306, 897
Eco81I CCTNAGG 1 cut(s) 576
EcoRII CCWGG 1 cut(s) 403
EcoT14I CCWWGG 1 cut(s) 987
EcoT22I ATGCAT 1 cut(s) 890
ErhI CCWWGG 1 cut(s) 987
FaeI CATG 5 cut(s) 143, 497, 721, 888, 1054
FaqI GGGAC 2 cut(s) 482, 1006
FatI CATG 5 cut(s) 139, 493, 717, 884, 1050
FauNDI CATATG 1 cut(s) 745
FbaI TGATCA 1 cut(s) 868
FblI GTMKAC 1 cut(s) 773
Fnu4HI GCNGC 1 cut(s) 173
FokI GGATG 2 cut(s) 17, 1033
Fsp4HI GCNGC 1 cut(s) 173
FspBI CTAG 3 cut(s) 785, 968, 1099
GlaI GCGC 1 cut(s) 1011
GluI GCNGC 1 cut(s) 173
GsuI CTGGAG 1 cut(s) 635
HaeII RGCGCY 1 cut(s) 1013
HaeIII GGCC 2 cut(s) 50, 961
HhaI GCGC 1 cut(s) 1012
Hin1II CATG 5 cut(s) 143, 497, 721, 888, 1054
Hin6I GCGC 1 cut(s) 1010
HinP1I GCGC 1 cut(s) 1010
HindIII AAGCTT 1 cut(s) 245
HinfI GANTC 2 cut(s) 518, 557
HphI GGTGA 2 cut(s) 398, 949
Hpy166II GTNNAC 4 cut(s) 655, 774, 940, 973
Hpy188I TCNGA 3 cut(s) 64, 286, 930
Hpy188III TCNNGA 6 cut(s) 89, 396, 614, 683, 704, 824
Hpy8I GTNNAC 4 cut(s) 655, 774, 940, 973
HpyAV CCTTC 4 cut(s) 330, 334, 680, 931
HpyCH4III ACNGT 3 cut(s) 547, 669, 977
HpyCH4IV ACGT 1 cut(s) 439
HpyCH4V TGCA 9 cut(s) 166, 172, 506, 524, 535, 550, 755, 888, 901
HpyF10VI GCNNNNNNNGC 2 cut(s) 172, 181
HpyF3I CTNAG 5 cut(s) 185, 206, 234, 485, 576
HpySE526I ACGT 1 cut(s) 439
Hsp92II CATG 5 cut(s) 143, 497, 721, 888, 1054
HspAI GCGC 1 cut(s) 1010
Ksp22I TGATCA 1 cut(s) 868
Kzo9I GATC 5 cut(s) 70, 85, 689, 714, 868
LmnI GCTCC 3 cut(s) 306, 489, 616
Lsp1109I GCAGC 1 cut(s) 184
LweI GCATC 2 cut(s) 300, 910
MaeI CTAG 3 cut(s) 785, 968, 1099
MaeII ACGT 1 cut(s) 439
MaeIII GTNAC 3 cut(s) 292, 802, 914
MalI GATC 5 cut(s) 72, 87, 691, 716, 870
MboI GATC 5 cut(s) 70, 85, 689, 714, 868
MboII GAAGA 9 cut(s) 104, 269, 299, 435, 624, 724, 890, 1054, 1057
MhlI GDGCHC 1 cut(s) 1058
MluCI AATT 4 cut(s) 65, 365, 592, 707
MnlI CCTC 6 cut(s) 118, 355, 438, 492, 951, 996
Mph1103I ATGCAT 1 cut(s) 890
MroXI GAANNNNTTC 1 cut(s) 836
MseI TTAA 5 cut(s) 177, 606, 762, 851, 1089
MslI CAYNNNNRTG 2 cut(s) 476, 1049
MspR9I CCNGG 1 cut(s) 405
Mva1269I GAATGC 1 cut(s) 448
MvaI CCWGG 1 cut(s) 405
MwoI GCNNNNNNNGC 2 cut(s) 172, 181
NdeI CATATG 1 cut(s) 745
NdeII GATC 5 cut(s) 70, 85, 689, 714, 868
NlaIII CATG 5 cut(s) 143, 497, 721, 888, 1054
NlaIV GGNNCC 1 cut(s) 491
NmuCI GTSAC 1 cut(s) 802
NsiI ATGCAT 1 cut(s) 890
NspI RCATGY 2 cut(s) 143, 888
NspV TTCGAA 1 cut(s) 1068
PciI ACATGT 1 cut(s) 139
PctI GAATGC 1 cut(s) 448
PdmI GAANNNNTTC 1 cut(s) 836
PfeI GAWTC 2 cut(s) 518, 557
PkrI GCNGC 1 cut(s) 174
PscI ACATGT 1 cut(s) 139
Psp6I CCWGG 1 cut(s) 403
PspGI CCWGG 1 cut(s) 403
PspN4I GGNNCC 1 cut(s) 491
PspPI GGNCC 1 cut(s) 210
RsaI GTAC 5 cut(s) 35, 131, 232, 239, 974
RsaNI GTAC 5 cut(s) 34, 130, 231, 238, 973
RseI CAYNNNNRTG 2 cut(s) 476, 1049
SaqAI TTAA 5 cut(s) 177, 606, 762, 851, 1089
SatI GCNGC 1 cut(s) 173
Sau3AI GATC 5 cut(s) 70, 85, 689, 714, 868
Sau96I GGNCC 1 cut(s) 210
ScaI AGTACT 1 cut(s) 35
ScrFI CCNGG 1 cut(s) 405
SduI GDGCHC 1 cut(s) 1058
SfaNI GCATC 2 cut(s) 300, 910
SfcI CTRYAG 3 cut(s) 314, 673, 948
SfuI TTCGAA 1 cut(s) 1068
SinI GGWCC 1 cut(s) 210
SmiI ATTTAAAT 1 cut(s) 607
SmiMI CAYNNNNRTG 2 cut(s) 476, 1049
SpeI ACTAGT 1 cut(s) 967
Sse9I AATT 4 cut(s) 65, 365, 592, 707
SsiI CCGC 4 cut(s) 122, 213, 320, 912
SspMI CTAG 3 cut(s) 785, 968, 1099
StyD4I CCNGG 1 cut(s) 403
StyI CCWWGG 1 cut(s) 987
SwaI ATTTAAAT 1 cut(s) 607
TaaI ACNGT 3 cut(s) 547, 669, 977
TaiI ACGT 1 cut(s) 442
TaqI TCGA 1 cut(s) 1068
TasI AATT 4 cut(s) 65, 365, 592, 707
TatI WGTACW 3 cut(s) 33, 129, 230
TfiI GAWTC 2 cut(s) 518, 557
Tru1I TTAA 5 cut(s) 177, 606, 762, 851, 1089
Tru9I TTAA 5 cut(s) 177, 606, 762, 851, 1089
TscAI CASTG 4 cut(s) 648, 674, 799, 903
TseFI GTSAC 1 cut(s) 802
TseI GCWGC 1 cut(s) 172
Tsp45I GTSAC 1 cut(s) 802
TspDTI ATGAA 2 cut(s) 237, 732
TspRI CASTG 4 cut(s) 648, 674, 799, 903
VpaK11BI GGWCC 1 cut(s) 210
XapI RAATTY 1 cut(s) 592
XceI RCATGY 2 cut(s) 143, 888
XmiI GTMKAC 1 cut(s) 773
XmnI GAANNNNTTC 1 cut(s) 836
XspI CTAG 3 cut(s) 785, 968, 1099
ZrmI AGTACT 1 cut(s) 35
Zsp2I ATGCAT 1 cut(s) 890
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.