Rh5CG375700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0006259
Physical Location & Seq
Forward (+)
48622035 .. 48627024
4990 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG375700.1

Sequence Viewer

Length: 765 bp
ATGGATGCTCTCTATTCAAAGCTCTACGACAAGTACTCCAAAATCAAGACCAAAAAGTTTTCCGAATTGGATCAACAAAATAAAGATCAAGAAGACAAGTTTTTGAACTATATCCAAGTTGCGGAGGAGTACATTCAACATGTGAAAAGTGAAAATGAGCAGTTGCATTCGCAGCTTAATGACCTTAGAAGTGAAGTGGCTTCTCTCAGGTCCGCAAAAGATGAACAATGTACTGAGTACCAGAAGCTTTTGATGGAAGAAAACAGGAAAAATAAAGAGCTTTCTGAAGAAGTAACAAAGCTCCAAAAGATGCTACAGGCGGAAACCTTTAGCAGAAGGAAGGATAGCAACACAGACAATGAGGAATTATGTATGTCCGGTGGTGGTGAAGTATCAGGAGAACCAGGCAGTAGCTCAAAGAGAAGAGATACAAATAAACGTAAGAGGCATTCTGGGGTGGAGACAGGGGACATCAATATGCCTTTTAGGAGCCATGATGATAGTGCAATACCAAGAGAATCTGCAAAGGACTTGCACAAGGAAGCTGTGCTTAGGGAATCTCTTGTTGGTTCTCATAAGACCAATGTAAACTTTCAGCCACAGTGCTGTAGAAATCTTGAAGGATCAGGTGGCAGTGTGGCTGTCACATCTAACTGCCTGTTTCAAGAGCTTAATGAGTACGTGTGGGGCTTAAAGTTCTCCATTGTTGATCAAACTGAAGAAACATGCATTTCAGCAGTGCATCAATCAAGCGGTAATTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

254

Amino Acids

28.93

Weight (kDa)

5.62

Isoelectric Point (pI)

61.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7806 PF25091 217 - 253 2.2e-09 Domain of unknown function (DUF7806)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 122, 213, 320, 753
AclWI GGATC 2 cut(s) 78, 631
AcuI CTGAAG 2 cut(s) 306, 738
AfaI GTAC 5 cut(s) 35, 131, 232, 239, 680
AfiI CCNNNNNNNGG 1 cut(s) 121
AflIII ACRYGT 2 cut(s) 139, 681
AgsI TTSAA 5 cut(s) 18, 106, 137, 620, 665
AjnI CCWGG 1 cut(s) 403
AjuI GAANNNNNNNTTGG 2 cut(s) 549, 581
AluBI AGCT 8 cut(s) 22, 175, 247, 280, 301, 414, 545, 670
AluI AGCT 8 cut(s) 22, 175, 247, 280, 301, 414, 545, 670
Alw26I GTCTC 1 cut(s) 455
AlwI GGATC 2 cut(s) 78, 631
ApeKI GCWGC 1 cut(s) 172
AspS9I GGNCC 1 cut(s) 210
AsuHPI GGTGA 1 cut(s) 398
AvaII GGWCC 1 cut(s) 210
BbsI GAAGAC 1 cut(s) 99
BbvI GCAGC 1 cut(s) 184
BccI CCATC 1 cut(s) 247
BciT130I CCWGG 1 cut(s) 405
BclI TGATCA 1 cut(s) 709
BcoDI GTCTC 1 cut(s) 455
BfmI CTRYAG 2 cut(s) 314, 607
BisI GCNGC 1 cut(s) 173
BlsI GCNGC 1 cut(s) 174
BmcAI AGTACT 1 cut(s) 35
Bme1390I CCNGG 1 cut(s) 405
Bme18I GGWCC 1 cut(s) 210
BmgT120I GGNCC 1 cut(s) 210
BmiI GGNNCC 1 cut(s) 491
BmrFI CCNGG 1 cut(s) 405
BmsI GCATC 2 cut(s) 300, 751
BpiI GAAGAC 1 cut(s) 99
Bpu10I CCTNAGC 1 cut(s) 551
BsaAI YACGTR 1 cut(s) 682
BsaWI WCCGGW 1 cut(s) 377
BsaXI ACNNNNNCTCC 2 cut(s) 20, 50
Bsc4I CCNNNNNNNGG 1 cut(s) 121
BseBI CCWGG 1 cut(s) 405
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 121
BseMII CTCAG 2 cut(s) 220, 225
BseRI GAGGAG 1 cut(s) 140
BseXI GCAGC 1 cut(s) 184
BsiSI CCGG 1 cut(s) 378
BslFI GGGAC 1 cut(s) 482
BslI CCNNNNNNNGG 1 cut(s) 121
BsmAI GTCTC 1 cut(s) 455
BsmFI GGGAC 1 cut(s) 482
BsmI GAATGC 2 cut(s) 166, 448
Bsp143I GATC 4 cut(s) 70, 85, 623, 709
BspACI CCGC 4 cut(s) 122, 213, 320, 753
BspCNI CTCAG 2 cut(s) 219, 226
BspLI GGNNCC 1 cut(s) 491
BspPI GGATC 2 cut(s) 78, 631
BssMI GATC 4 cut(s) 70, 85, 623, 709
Bst2UI CCWGG 1 cut(s) 405
Bst4CI ACNGT 1 cut(s) 603
Bst6I CTCTTC 1 cut(s) 418
BstBAI YACGTR 1 cut(s) 682
BstDEI CTNAG 5 cut(s) 185, 206, 234, 551, 762
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 4 cut(s) 73, 88, 626, 712
BstMAI GTCTC 1 cut(s) 455
BstMBI GATC 4 cut(s) 70, 85, 623, 709
BstMWI GCNNNNNNNGC 1 cut(s) 172
BstNI CCWGG 1 cut(s) 405
BstNSI RCATGY 2 cut(s) 143, 729
BstSCI CCNGG 1 cut(s) 403
BstSFI CTRYAG 2 cut(s) 314, 607
BstV1I GCAGC 1 cut(s) 184
BstV2I GAAGAC 1 cut(s) 99
BtsCI GGATG 1 cut(s) 10
BtsI GCAGTG 2 cut(s) 640, 744
BtsIMutI CAGTG 3 cut(s) 608, 640, 744
Cfr13I GGNCC 1 cut(s) 210
Csp6I GTAC 5 cut(s) 34, 130, 231, 238, 679
CviAII CATG 3 cut(s) 140, 494, 726
CviQI GTAC 5 cut(s) 34, 130, 231, 238, 679
DdeI CTNAG 5 cut(s) 185, 206, 234, 551, 762
DpnI GATC 4 cut(s) 72, 87, 625, 711
DpnII GATC 4 cut(s) 70, 85, 623, 709
Eam1104I CTCTTC 1 cut(s) 418
EarI CTCTTC 1 cut(s) 418
EciI GGCGGA 1 cut(s) 335
Eco47I GGWCC 1 cut(s) 210
Eco57I CTGAAG 2 cut(s) 306, 738
EcoRII CCWGG 1 cut(s) 403
EcoT22I ATGCAT 1 cut(s) 731
FaeI CATG 3 cut(s) 143, 497, 729
FaiI YATR 8 cut(s) 111, 141, 370, 374, 479, 495, 576, 727
FalI AAGNNNNNCTT 2 cut(s) 534, 566
FaqI GGGAC 1 cut(s) 482
FatI CATG 3 cut(s) 139, 493, 725
FbaI TGATCA 1 cut(s) 709
Fnu4HI GCNGC 1 cut(s) 173
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 173
GluI GCNGC 1 cut(s) 173
HapII CCGG 1 cut(s) 378
Hin1II CATG 3 cut(s) 143, 497, 729
HindIII AAGCTT 1 cut(s) 245
HinfI GANTC 2 cut(s) 518, 557
HpaII CCGG 1 cut(s) 378
HphI GGTGA 1 cut(s) 398
Hpy166II GTNNAC 1 cut(s) 589
Hpy188I TCNGA 2 cut(s) 64, 286
Hpy188III TCNNGA 5 cut(s) 46, 89, 396, 617, 665
Hpy8I GTNNAC 1 cut(s) 589
HpyAV CCTTC 3 cut(s) 330, 334, 614
HpyCH4III ACNGT 1 cut(s) 603
HpyCH4IV ACGT 2 cut(s) 439, 681
HpyCH4V TGCA 6 cut(s) 166, 506, 524, 535, 729, 742
HpyF10VI GCNNNNNNNGC 1 cut(s) 172
HpyF3I CTNAG 5 cut(s) 185, 206, 234, 551, 762
HpySE526I ACGT 2 cut(s) 439, 681
Hsp92II CATG 3 cut(s) 143, 497, 729
Ksp22I TGATCA 1 cut(s) 709
Kzo9I GATC 4 cut(s) 70, 85, 623, 709
LmnI GCTCC 2 cut(s) 306, 489
Lsp1109I GCAGC 1 cut(s) 184
LweI GCATC 2 cut(s) 300, 751
MaeII ACGT 2 cut(s) 439, 681
MaeIII GTNAC 2 cut(s) 292, 643
MalI GATC 4 cut(s) 72, 87, 625, 711
MboI GATC 4 cut(s) 70, 85, 623, 709
MboII GAAGA 5 cut(s) 104, 269, 299, 435, 731
MluCI AATT 3 cut(s) 65, 365, 757
MnlI CCTC 3 cut(s) 118, 355, 438
Mph1103I ATGCAT 1 cut(s) 731
MseI TTAA 3 cut(s) 177, 672, 692
MslI CAYNNNNRTG 1 cut(s) 476
MspI CCGG 1 cut(s) 378
MspR9I CCNGG 1 cut(s) 405
Mva1269I GAATGC 2 cut(s) 166, 448
MvaI CCWGG 1 cut(s) 405
MwoI GCNNNNNNNGC 1 cut(s) 172
NdeII GATC 4 cut(s) 70, 85, 623, 709
NlaIII CATG 3 cut(s) 143, 497, 729
NlaIV GGNNCC 1 cut(s) 491
NmuCI GTSAC 1 cut(s) 643
NsiI ATGCAT 1 cut(s) 731
NspI RCATGY 2 cut(s) 143, 729
PciI ACATGT 1 cut(s) 139
PctI GAATGC 2 cut(s) 166, 448
PfeI GAWTC 2 cut(s) 518, 557
PkrI GCNGC 1 cut(s) 174
Ppu21I YACGTR 1 cut(s) 682
PscI ACATGT 1 cut(s) 139
Psp6I CCWGG 1 cut(s) 403
PspGI CCWGG 1 cut(s) 403
PspN4I GGNNCC 1 cut(s) 491
PspPI GGNCC 1 cut(s) 210
RsaI GTAC 5 cut(s) 35, 131, 232, 239, 680
RsaNI GTAC 5 cut(s) 34, 130, 231, 238, 679
RseI CAYNNNNRTG 1 cut(s) 476
SaqAI TTAA 3 cut(s) 177, 672, 692
SatI GCNGC 1 cut(s) 173
Sau3AI GATC 4 cut(s) 70, 85, 623, 709
Sau96I GGNCC 1 cut(s) 210
ScaI AGTACT 1 cut(s) 35
ScrFI CCNGG 1 cut(s) 405
SfaNI GCATC 2 cut(s) 300, 751
SfcI CTRYAG 2 cut(s) 314, 607
SinI GGWCC 1 cut(s) 210
SmiMI CAYNNNNRTG 1 cut(s) 476
Sse9I AATT 3 cut(s) 65, 365, 757
SsiI CCGC 4 cut(s) 122, 213, 320, 753
StyD4I CCNGG 1 cut(s) 403
TaaI ACNGT 1 cut(s) 603
TaiI ACGT 2 cut(s) 442, 684
TasI AATT 3 cut(s) 65, 365, 757
TatI WGTACW 3 cut(s) 33, 129, 230
TfiI GAWTC 2 cut(s) 518, 557
Tru1I TTAA 3 cut(s) 177, 672, 692
Tru9I TTAA 3 cut(s) 177, 672, 692
TscAI CASTG 3 cut(s) 608, 640, 744
TseFI GTSAC 1 cut(s) 643
TseI GCWGC 1 cut(s) 172
Tsp45I GTSAC 1 cut(s) 643
TspDTI ATGAA 1 cut(s) 237
TspRI CASTG 3 cut(s) 608, 640, 744
VpaK11BI GGWCC 1 cut(s) 210
XceI RCATGY 2 cut(s) 143, 729
ZrmI AGTACT 1 cut(s) 35
Zsp2I ATGCAT 1 cut(s) 731
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.