Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0006259

Physical Location & Seq

Genomic Coordinates Forward (+)

54115999 .. 54121282

Gene Structure 5284 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG361600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGATGCTCTCTATTCAAAGCTCTACGACAAGTACTCCAAAATTAAGACCAAAAAGTTTTCCGAATTGGATCAACAAAATAAAGATCAAGAAGACAAGTTTTTGAACTATATCCAAGTTGCGGAGGAGTACATTCAACATGTGAAAAGTGAAAATGAGCAGTTGCATTCGCAGCTTAATGACCTTAGAAGTGAAGTGGCTTCTCTCAGGTCCGCAAAAGATGAACAATGTACCGAGTACCAGAAGCTTTTAATGGAAGAAAACAGGAAAAATAAAGAGCTTTCTGAAGAAGTAACAAAGCTCCAAAAGATGCTACAGGCGGAAACCTTTAGCAGAAGGAACGATAGCAACACAGACAATGAGGAATTATGTATGTCTGGTGGCGGTGAAGTATCAGGAGAACCAGGCAGTAGCTCAAAGAGAAGAGATACAAATAAACGTAAGAGGCATTCTGGGGTGGAGACAGGGGACATCAATATGCCTTTTAGAAGCCATGATGATAGTGCCATACCAAGAAAATCTGCAAAGGACTTGCACAAGGAAGCTGTGCATGGGGAATCTCTTGTTGGTTCTCATAAGACCAATGTAAACTTTCAGCCACAGTGCTGTAGAAATCTTGAAGGATCAGGTATGTGTCTGGAATTGAAGATCATGTCATTTTCCTTGTTCATATGGTATTGCATGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

229

Amino Acids

26.43

Weight (kDa)

6.2

Isoelectric Point (pI)

64.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20070 AT3G20070 AT3G20070 AT3G20070
fragaria_vesca	FvH4_3g28310 FvH4_3g28310
malus_domestica	MD03G1170100.v1.1 MD11G1187600.v1.1
prunus_persica	Prupe.4G257000_v2.0.a1 Prupe.4G257000_v2.0.a1 Prupe.4G257000_v2.0.a1 Prupe.4G257000_v2.0.a1 Prupe.4G257000_v2.0.a1 Prupe.4G257000_v2.0.a1
pyrus_communis	pycom03g12650 pycom11g16430
rosa_chinensis	RchiOBHm_Chr5g0051191
rosa_laevigata	RLG00000034761
rosa_multiflora	Rmu_sc0012841.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029170
rosa_rugosa	Rorug05G0266600
rosa_samantha	Rh5AG338700 Rh5BG348700 Rh5CG375700 Rh5DG361600
rosa_wichuraiana	Rw0G023680 Rw5G032000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	122, 213, 320, 384
AclWI	GGATC	2 cut(s)	78, 631
AcuI	CTGAAG	1 cut(s)	306
AfaI	GTAC	4 cut(s)	35, 131, 232, 239
AfiI	CCNNNNNNNGG	1 cut(s)	121
AflIII	ACRYGT	1 cut(s)	139
AgsI	TTSAA	5 cut(s)	18, 106, 137, 620, 646
AjnI	CCWGG	1 cut(s)	403
AjuI	GAANNNNNNNTTGG	2 cut(s)	549, 581
AluBI	AGCT	7 cut(s)	22, 175, 247, 280, 301, 414, 545
AluI	AGCT	7 cut(s)	22, 175, 247, 280, 301, 414, 545
Alw26I	GTCTC	1 cut(s)	455
AlwI	GGATC	2 cut(s)	78, 631
ApeKI	GCWGC	1 cut(s)	172
AspS9I	GGNCC	1 cut(s)	210
AsuHPI	GGTGA	1 cut(s)	398
AvaII	GGWCC	1 cut(s)	210
BbsI	GAAGAC	1 cut(s)	99
BbvI	GCAGC	1 cut(s)	184
BciT130I	CCWGG	1 cut(s)	405
BcoDI	GTCTC	1 cut(s)	455
BfmI	CTRYAG	2 cut(s)	314, 607
BisI	GCNGC	1 cut(s)	173
BlsI	GCNGC	1 cut(s)	174
BmcAI	AGTACT	1 cut(s)	35
Bme1390I	CCNGG	1 cut(s)	405
Bme18I	GGWCC	1 cut(s)	210
BmgT120I	GGNCC	1 cut(s)	210
BmrFI	CCNGG	1 cut(s)	405
BmsI	GCATC	1 cut(s)	300
BpiI	GAAGAC	1 cut(s)	99
BsaXI	ACNNNNNCTCC	2 cut(s)	20, 50
Bsc4I	CCNNNNNNNGG	1 cut(s)	121
BseBI	CCWGG	1 cut(s)	405
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	121
BseMII	CTCAG	1 cut(s)	220
BseRI	GAGGAG	1 cut(s)	140
BseXI	GCAGC	1 cut(s)	184
BslFI	GGGAC	1 cut(s)	482
BslI	CCNNNNNNNGG	1 cut(s)	121
BsmAI	GTCTC	1 cut(s)	455
BsmFI	GGGAC	1 cut(s)	482
BsmI	GAATGC	2 cut(s)	166, 448
Bsp143I	GATC	4 cut(s)	70, 85, 623, 648
BspACI	CCGC	4 cut(s)	122, 213, 320, 384
BspCNI	CTCAG	1 cut(s)	219
BspPI	GGATC	2 cut(s)	78, 631
BssMI	GATC	4 cut(s)	70, 85, 623, 648
Bst2UI	CCWGG	1 cut(s)	405
Bst4CI	ACNGT	1 cut(s)	603
Bst6I	CTCTTC	1 cut(s)	418
BstDEI	CTNAG	2 cut(s)	185, 206
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	4 cut(s)	73, 88, 626, 651
BstMAI	GTCTC	1 cut(s)	455
BstMBI	GATC	4 cut(s)	70, 85, 623, 648
BstMWI	GCNNNNNNNGC	1 cut(s)	172
BstNI	CCWGG	1 cut(s)	405
BstNSI	RCATGY	1 cut(s)	143
BstSCI	CCNGG	1 cut(s)	403
BstSFI	CTRYAG	2 cut(s)	314, 607
BstV1I	GCAGC	1 cut(s)	184
BstV2I	GAAGAC	1 cut(s)	99
BtsCI	GGATG	1 cut(s)	10
BtsIMutI	CAGTG	1 cut(s)	608
Cfr13I	GGNCC	1 cut(s)	210
Csp6I	GTAC	4 cut(s)	34, 130, 231, 238
CviAII	CATG	5 cut(s)	140, 494, 551, 652, 682
CviQI	GTAC	4 cut(s)	34, 130, 231, 238
DdeI	CTNAG	2 cut(s)	185, 206
DpnI	GATC	4 cut(s)	72, 87, 625, 650
DpnII	GATC	4 cut(s)	70, 85, 623, 648
Eam1104I	CTCTTC	1 cut(s)	418
EarI	CTCTTC	1 cut(s)	418
EciI	GGCGGA	1 cut(s)	335
Eco47I	GGWCC	1 cut(s)	210
Eco57I	CTGAAG	1 cut(s)	306
EcoRII	CCWGG	1 cut(s)	403
FaeI	CATG	5 cut(s)	143, 497, 554, 655, 685
FaqI	GGGAC	1 cut(s)	482
FatI	CATG	5 cut(s)	139, 493, 550, 651, 681
FauNDI	CATATG	1 cut(s)	671
Fnu4HI	GCNGC	1 cut(s)	173
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	1 cut(s)	173
GluI	GCNGC	1 cut(s)	173
Hin1II	CATG	5 cut(s)	143, 497, 554, 655, 685
HindIII	AAGCTT	1 cut(s)	245
HinfI	GANTC	1 cut(s)	557
HphI	GGTGA	1 cut(s)	398
Hpy166II	GTNNAC	1 cut(s)	589
Hpy188I	TCNGA	2 cut(s)	64, 286
Hpy188III	TCNNGA	4 cut(s)	89, 396, 617, 638
Hpy8I	GTNNAC	1 cut(s)	589
HpyAV	CCTTC	2 cut(s)	330, 614
HpyCH4III	ACNGT	1 cut(s)	603
HpyCH4IV	ACGT	1 cut(s)	439
HpyCH4V	TGCA	5 cut(s)	166, 524, 535, 550, 681
HpyF10VI	GCNNNNNNNGC	1 cut(s)	172
HpyF3I	CTNAG	2 cut(s)	185, 206
HpySE526I	ACGT	1 cut(s)	439
Hsp92II	CATG	5 cut(s)	143, 497, 554, 655, 685
Kzo9I	GATC	4 cut(s)	70, 85, 623, 648
LmnI	GCTCC	1 cut(s)	306
Lsp1109I	GCAGC	1 cut(s)	184
LweI	GCATC	1 cut(s)	300
MaeII	ACGT	1 cut(s)	439
MaeIII	GTNAC	1 cut(s)	292
MalI	GATC	4 cut(s)	72, 87, 625, 650
MboI	GATC	4 cut(s)	70, 85, 623, 648
MboII	GAAGA	5 cut(s)	104, 269, 299, 435, 658
MluCI	AATT	4 cut(s)	42, 65, 365, 641
MnlI	CCTC	3 cut(s)	118, 355, 438
MseI	TTAA	4 cut(s)	45, 177, 251, 688
MslI	CAYNNNNRTG	1 cut(s)	476
MspR9I	CCNGG	1 cut(s)	405
Mva1269I	GAATGC	2 cut(s)	166, 448
MvaI	CCWGG	1 cut(s)	405
MwoI	GCNNNNNNNGC	1 cut(s)	172
NdeI	CATATG	1 cut(s)	671
NdeII	GATC	4 cut(s)	70, 85, 623, 648
NlaIII	CATG	5 cut(s)	143, 497, 554, 655, 685
NspI	RCATGY	1 cut(s)	143
PciI	ACATGT	1 cut(s)	139
PctI	GAATGC	2 cut(s)	166, 448
PfeI	GAWTC	1 cut(s)	557
PkrI	GCNGC	1 cut(s)	174
PscI	ACATGT	1 cut(s)	139
Psp6I	CCWGG	1 cut(s)	403
PspGI	CCWGG	1 cut(s)	403
PspPI	GGNCC	1 cut(s)	210
RsaI	GTAC	4 cut(s)	35, 131, 232, 239
RsaNI	GTAC	4 cut(s)	34, 130, 231, 238
RseI	CAYNNNNRTG	1 cut(s)	476
SaqAI	TTAA	4 cut(s)	45, 177, 251, 688
SatI	GCNGC	1 cut(s)	173
Sau3AI	GATC	4 cut(s)	70, 85, 623, 648
Sau96I	GGNCC	1 cut(s)	210
ScaI	AGTACT	1 cut(s)	35
ScrFI	CCNGG	1 cut(s)	405
SfaNI	GCATC	1 cut(s)	300
SfcI	CTRYAG	2 cut(s)	314, 607
SinI	GGWCC	1 cut(s)	210
SmiMI	CAYNNNNRTG	1 cut(s)	476
Sse9I	AATT	4 cut(s)	42, 65, 365, 641
SsiI	CCGC	4 cut(s)	122, 213, 320, 384
StyD4I	CCNGG	1 cut(s)	403
TaaI	ACNGT	1 cut(s)	603
TaiI	ACGT	1 cut(s)	442
TasI	AATT	4 cut(s)	42, 65, 365, 641
TatI	WGTACW	2 cut(s)	33, 129
TfiI	GAWTC	1 cut(s)	557
Tru1I	TTAA	4 cut(s)	45, 177, 251, 688
Tru9I	TTAA	4 cut(s)	45, 177, 251, 688
TscAI	CASTG	1 cut(s)	608
TseI	GCWGC	1 cut(s)	172
TspDTI	ATGAA	2 cut(s)	237, 658
TspRI	CASTG	1 cut(s)	608
VpaK11BI	GGWCC	1 cut(s)	210
XceI	RCATGY	1 cut(s)	143
ZrmI	AGTACT	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.