Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0006259

Physical Location & Seq

Genomic Coordinates Forward (+)

13387035 .. 13390156

Gene Structure 3122 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g12650.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGTCGACGACGGAAGCTCTCTACTCCAAACTCTACGAAAAGTACACAAAAATCAAGACGAAGAAATGGTCGGAGTTGGATGAAATTGGTAGAGAACAAGAAGGAAAGTTCAAGCATTATGTATCTGTTGCAGAGGAGTATATACAACATTTGCGAAATCAAAATGAGAGGTTGCGCTTGGAAGTTGATGAGCTGAGAAGTGAAGTGGCTTCTATTAGGTCCACCAAAGATGAACAATGTACCGAGTACCAGAATCTTTTGATGGAAGAGAACAGGACAAATAAAGAACTTTCTGAAGAAGTAGAGAGGCTCCGAAAGCTGCAACAGGTGGGAAATCTATCGAATGATAGCAACACAGACAATGGTGGACTGTGTACACCTGCTAGTGGTCAAGTATCCGGAGCAGCAGGAAATCTCTCAAAGAGAAGAAGGACAAGTAAACGTAGGAAGAATTCCTACTCTGAGACAGAGGATATAGTTATGCCTTCTTGTGGGGCTGTTATAACTGTTCCAGAGGTACAATGGTGTAGAACGATTGAAAGACAAGGTTGTGTAAAACCAATTGGCCAAGTGAACTGCGTGTTTCAAGTGCTTGTTGAGTATATGGTGGATTTAAAGTTCTCGACTGTTAGTCAAGCCGAAGAAATATGCATCTCAGCTGTGCATCAATCAAGTGGTTACGCCTTCAATCTTACATGGATGAACAGAGCTGCAGGTAAAATAGAGCTTCTGTACCGCACCTCATCCTTGGGAACGCTTGAGAGGGTAGCACCAGAATGGATGAAGGATGACATAGTGTTAAGCCCAAACATGTGCCCTATCTTCTTTGAAAGGTTATCTCGTGTTGTCAAGCTGCACTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

288

Amino Acids

32.88

Weight (kDa)

6.91

Isoelectric Point (pI)

54.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20070 AT3G20070 AT3G20070 AT3G20070
fragaria_vesca	FvH4_3g28310 FvH4_3g28310
malus_domestica	MD03G1170100.v1.1 MD11G1187600.v1.1
prunus_persica	Prupe.4G257000_v2.0.a1 Prupe.4G257000_v2.0.a1 Prupe.4G257000_v2.0.a1 Prupe.4G257000_v2.0.a1 Prupe.4G257000_v2.0.a1 Prupe.4G257000_v2.0.a1
pyrus_communis	pycom03g12650 pycom11g16430
rosa_chinensis	RchiOBHm_Chr5g0051191
rosa_laevigata	RLG00000034761
rosa_multiflora	Rmu_sc0012841.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029170
rosa_rugosa	Rorug05G0266600
rosa_samantha	Rh5AG338700 Rh5BG348700 Rh5CG375700 Rh5DG361600
rosa_wichuraiana	Rw0G023680 Rw5G032000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	503
AarI	CACCTGC	1 cut(s)	388
Acc36I	ACCTGC	2 cut(s)	388, 704
AccI	GTMKAC	1 cut(s)	5
AccIII	TCCGGA	1 cut(s)	398
AciI	CCGC	1 cut(s)	736
AcoI	YGGCCR	1 cut(s)	565
AcsI	RAATTY	1 cut(s)	451
AcuI	CTGAAG	1 cut(s)	315
AfaI	GTAC	6 cut(s)	44, 241, 248, 376, 519, 734
AfiI	CCNNNNNNNGG	2 cut(s)	386, 491
AflIII	ACRYGT	1 cut(s)	810
AgsI	TTSAA	5 cut(s)	112, 539, 587, 688, 830
AhdI	GACNNNNNGTC	1 cut(s)	630
AloI	GAACNNNNNNTCC	2 cut(s)	602, 634
AluBI	AGCT	7 cut(s)	17, 193, 319, 659, 710, 727, 853
AluI	AGCT	7 cut(s)	17, 193, 319, 659, 710, 727, 853
Alw26I	GTCTC	1 cut(s)	458
Aor13HI	TCCGGA	1 cut(s)	398
AoxI	GGCC	1 cut(s)	565
ApeKI	GCWGC	4 cut(s)	319, 404, 710, 853
ApoI	RAATTY	1 cut(s)	451
ArsI	GACNNNNNNTTYG	2 cut(s)	53, 85
AspLEI	GCGC	1 cut(s)	177
AspS9I	GGNCC	1 cut(s)	219
AvaII	GGWCC	1 cut(s)	219
BaeGI	GKGCMC	1 cut(s)	818
BaeI	ACNNNNGTAYC	2 cut(s)	509, 542
BalI	TGGCCA	1 cut(s)	567
BarI	GAAGNNNNNNTAC	2 cut(s)	440, 472
BauI	CACGAG	1 cut(s)	840
BbvI	GCAGC	4 cut(s)	306, 416, 697, 840
BccI	CCATC	1 cut(s)	256
BciVI	GTATCC	1 cut(s)	406
BcoDI	GTCTC	1 cut(s)	458
BfaI	CTAG	2 cut(s)	384, 862
BfmI	CTRYAG	1 cut(s)	711
BfuAI	ACCTGC	2 cut(s)	388, 704
BfuI	GTATCC	1 cut(s)	406
BisI	GCNGC	4 cut(s)	320, 405, 711, 854
BlsI	GCNGC	4 cut(s)	321, 406, 712, 855
Bme18I	GGWCC	1 cut(s)	219
BmeRI	GACNNNNNGTC	1 cut(s)	630
BmgT120I	GGNCC	1 cut(s)	219
BmiI	GGNNCC	1 cut(s)	311
BmsI	GCATC	2 cut(s)	660, 673
BpuEI	CTTGAG	1 cut(s)	779
BsaJI	CCNNGG	1 cut(s)	747
BsaWI	WCCGGW	1 cut(s)	398
Bsc4I	CCNNNNNNNGG	2 cut(s)	386, 491
BseAI	TCCGGA	1 cut(s)	398
BseDI	CCNNGG	1 cut(s)	747
BseGI	GGATG	5 cut(s)	85, 705, 743, 786, 793
BseLI	CCNNNNNNNGG	2 cut(s)	386, 491
BseMII	CTCAG	3 cut(s)	185, 453, 669
BseRI	GAGGAG	1 cut(s)	149
BseSI	GKGCMC	1 cut(s)	818
BseXI	GCAGC	4 cut(s)	306, 416, 697, 840
BsgI	GTGCAG	1 cut(s)	839
BshFI	GGCC	1 cut(s)	567
BsiSI	CCGG	1 cut(s)	399
BslI	CCNNNNNNNGG	2 cut(s)	386, 491
BsmAI	GTCTC	1 cut(s)	458
BsnI	GGCC	1 cut(s)	567
Bsp1286I	GDGCHC	1 cut(s)	818
Bsp13I	TCCGGA	1 cut(s)	398
Bsp1407I	TGTACA	1 cut(s)	374
BspACI	CCGC	1 cut(s)	736
BspANI	GGCC	1 cut(s)	567
BspCNI	CTCAG	3 cut(s)	186, 454, 668
BspEI	TCCGGA	1 cut(s)	398
BspLI	GGNNCC	1 cut(s)	311
BspMAI	CTGCAG	1 cut(s)	715
BspMI	ACCTGC	2 cut(s)	388, 704
BsrGI	TGTACA	1 cut(s)	374
BssECI	CCNNGG	1 cut(s)	747
BssSI	CACGAG	1 cut(s)	840
BssT1I	CCWWGG	1 cut(s)	747
Bst2BI	CACGAG	1 cut(s)	840
Bst4CI	ACNGT	3 cut(s)	372, 508, 628
Bst6I	CTCTTC	1 cut(s)	261
BstAUI	TGTACA	1 cut(s)	374
BstDEI	CTNAG	3 cut(s)	194, 462, 655
BstF5I	GGATG	5 cut(s)	85, 705, 743, 786, 793
BstHHI	GCGC	1 cut(s)	177
BstMAI	GTCTC	1 cut(s)	458
BstMWI	GCNNNNNNNGC	1 cut(s)	316
BstNSI	RCATGY	1 cut(s)	814
BstSFI	CTRYAG	1 cut(s)	711
BstSLI	GKGCMC	1 cut(s)	818
BstV1I	GCAGC	4 cut(s)	306, 416, 697, 840
BsuI	GTATCC	1 cut(s)	406
BsuRI	GGCC	1 cut(s)	567
BtsCI	GGATG	5 cut(s)	85, 705, 743, 786, 793
BveI	ACCTGC	2 cut(s)	388, 704
CfoI	GCGC	1 cut(s)	177
Cfr13I	GGNCC	1 cut(s)	219
Csp6I	GTAC	6 cut(s)	43, 240, 247, 375, 518, 733
CviAII	CATG	2 cut(s)	696, 811
CviQI	GTAC	6 cut(s)	43, 240, 247, 375, 518, 733
DdeI	CTNAG	3 cut(s)	194, 462, 655
DraI	TTTAAA	1 cut(s)	615
DriI	GACNNNNNGTC	1 cut(s)	630
EaeI	YGGCCR	1 cut(s)	565
Eam1104I	CTCTTC	1 cut(s)	261
Eam1105I	GACNNNNNGTC	1 cut(s)	630
EarI	CTCTTC	1 cut(s)	261
Eco130I	CCWWGG	1 cut(s)	747
Eco47I	GGWCC	1 cut(s)	219
Eco57I	CTGAAG	1 cut(s)	315
EcoRI	GAATTC	1 cut(s)	451
EcoT14I	CCWWGG	1 cut(s)	747
EcoT22I	ATGCAT	1 cut(s)	653
ErhI	CCWWGG	1 cut(s)	747
FaeI	CATG	2 cut(s)	699, 814
FatI	CATG	2 cut(s)	695, 810
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	4 cut(s)	320, 405, 711, 854
FokI	GGATG	5 cut(s)	92, 712, 730, 793, 800
Fsp4HI	GCNGC	4 cut(s)	320, 405, 711, 854
FspBI	CTAG	2 cut(s)	384, 862
GlaI	GCGC	1 cut(s)	176
GluI	GCNGC	4 cut(s)	320, 405, 711, 854
HaeIII	GGCC	1 cut(s)	567
HapII	CCGG	1 cut(s)	399
HhaI	GCGC	1 cut(s)	177
Hin1II	CATG	2 cut(s)	699, 814
Hin6I	GCGC	1 cut(s)	175
HinP1I	GCGC	1 cut(s)	175
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	1 cut(s)	253
HpaII	CCGG	1 cut(s)	399
Hpy166II	GTNNAC	8 cut(s)	6, 45, 222, 368, 375, 377, 440, 574
Hpy188I	TCNGA	4 cut(s)	73, 295, 314, 463
Hpy188III	TCNNGA	4 cut(s)	55, 399, 512, 622
Hpy8I	GTNNAC	8 cut(s)	6, 45, 222, 368, 375, 377, 440, 574
Hpy99I	CGWCG	2 cut(s)	10, 13
HpyAV	CCTTC	5 cut(s)	95, 423, 495, 694, 778
HpyCH4III	ACNGT	3 cut(s)	372, 508, 628
HpyCH4IV	ACGT	1 cut(s)	442
HpyCH4V	TGCA	6 cut(s)	131, 322, 651, 664, 713, 856
HpyF10VI	GCNNNNNNNGC	1 cut(s)	316
HpyF3I	CTNAG	3 cut(s)	194, 462, 655
HpySE526I	ACGT	1 cut(s)	442
Hsp92II	CATG	2 cut(s)	699, 814
HspAI	GCGC	1 cut(s)	175
Kpn2I	TCCGGA	1 cut(s)	398
LmnI	GCTCC	2 cut(s)	315, 401
LpnPI	CCDG	9 cut(s)	259, 263, 311, 393, 393, 412, 525, 699, 786
Lsp1109I	GCAGC	4 cut(s)	306, 416, 697, 840
LweI	GCATC	2 cut(s)	660, 673
MaeI	CTAG	2 cut(s)	384, 862
MaeII	ACGT	1 cut(s)	442
MaeIII	GTNAC	1 cut(s)	677
MboII	GAAGA	7 cut(s)	73, 278, 308, 438, 460, 653, 814
MfeI	CAATTG	1 cut(s)	561
MhlI	GDGCHC	1 cut(s)	818
MlsI	TGGCCA	1 cut(s)	567
MluCI	AATT	3 cut(s)	84, 451, 561
MluNI	TGGCCA	1 cut(s)	567
MmeI	TCCRAC	2 cut(s)	51, 57
MnlI	CCTC	7 cut(s)	127, 162, 300, 463, 508, 751, 756
Mox20I	TGGCCA	1 cut(s)	567
Mph1103I	ATGCAT	1 cut(s)	653
MroI	TCCGGA	1 cut(s)	398
MscI	TGGCCA	1 cut(s)	567
MseI	TTAA	2 cut(s)	614, 800
MslI	CAYNNNNRTG	1 cut(s)	775
Msp20I	TGGCCA	1 cut(s)	567
MspA1I	CMGCKG	1 cut(s)	659
MspI	CCGG	1 cut(s)	399
MunI	CAATTG	1 cut(s)	561
MwoI	GCNNNNNNNGC	1 cut(s)	316
NlaIII	CATG	2 cut(s)	699, 814
NlaIV	GGNNCC	1 cut(s)	311
NsiI	ATGCAT	1 cut(s)	653
NspI	RCATGY	1 cut(s)	814
PaqCI	CACCTGC	1 cut(s)	388
PciI	ACATGT	1 cut(s)	810
PfeI	GAWTC	1 cut(s)	253
PkrI	GCNGC	4 cut(s)	321, 406, 712, 855
PscI	ACATGT	1 cut(s)	810
PsiI	TTATAA	1 cut(s)	503
PspN4I	GGNNCC	1 cut(s)	311
PspPI	GGNCC	1 cut(s)	219
PstI	CTGCAG	1 cut(s)	715
PvuII	CAGCTG	1 cut(s)	659
RsaI	GTAC	6 cut(s)	44, 241, 248, 376, 519, 734
RsaNI	GTAC	6 cut(s)	43, 240, 247, 375, 518, 733
RseI	CAYNNNNRTG	1 cut(s)	775
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	2 cut(s)	614, 800
SatI	GCNGC	4 cut(s)	320, 405, 711, 854
Sau96I	GGNCC	1 cut(s)	219
SduI	GDGCHC	1 cut(s)	818
SfaNI	GCATC	2 cut(s)	660, 673
SfcI	CTRYAG	1 cut(s)	711
SinI	GGWCC	1 cut(s)	219
SmiMI	CAYNNNNRTG	1 cut(s)	775
SmlI	CTYRAG	1 cut(s)	758
SmoI	CTYRAG	1 cut(s)	758
Sse9I	AATT	3 cut(s)	84, 451, 561
SsiI	CCGC	1 cut(s)	736
SspMI	CTAG	2 cut(s)	384, 862
StyI	CCWWGG	1 cut(s)	747
TaaI	ACNGT	3 cut(s)	372, 508, 628
TaiI	ACGT	1 cut(s)	445
TaqI	TCGA	3 cut(s)	5, 341, 623
TasI	AATT	3 cut(s)	84, 451, 561
TatI	WGTACW	2 cut(s)	42, 374
TfiI	GAWTC	1 cut(s)	253
Tru1I	TTAA	2 cut(s)	614, 800
Tru9I	TTAA	2 cut(s)	614, 800
TseI	GCWGC	4 cut(s)	319, 404, 710, 853
TspDTI	ATGAA	4 cut(s)	96, 246, 716, 797
TspGWI	ACGGA	1 cut(s)	26
VpaK11BI	GGWCC	1 cut(s)	219
XapI	RAATTY	1 cut(s)	451
XceI	RCATGY	1 cut(s)	814
XcmI	CCANNNNNNNNNTGG	1 cut(s)	519
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	2 cut(s)	384, 862
Zsp2I	ATGCAT	1 cut(s)	653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.