Prupe.4G257000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0006259
Physical Location & Seq
Reverse (-)
18096028 .. 18101782
5755 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G257000.6

Sequence Viewer

Length: 933 bp
ATGGAGGCTCTCTACTCGAAACTCTACGATACGTACATGAAACTCAAGTCGAAGAAATGGTCGGAGTTGGATAATGTTAATAAAGATCAAGAAGTAAAGTTCATGGATTATATCTCGGCTGCGGAGCAGGTAATCCAACAATTGAAATCTGAAAATGAGAGGTTGCTTTTACGAGTTAAAGATCTGACAAGTGAAGTGGCTTCTATTAGGTCCACCAAAGATGAACAATGTATTGAATACCAGGAGCTTTTAATGGAAGAGAACAGGAAGAATGAAGAACTTTCTGAAGAAGTAGCGAGGCTCCGAAATCTGCAACAGGTGGGAAATTTTAGCAGACTGAAGGATAGCAAAACAGACAATGGAGGAGTGTGTACACCTGCTAGTGGTCAAGTATCAGAAGAAGCAGGCAATCGGTCACAGAGAAGAAAGACACATAAACGTAGGAGGCAGTCCCTGTCTGAGACAGAGGATATAGTTATGCCTTCTAGCAGTCTTCAAGATGATGAAATCCTAAGAGAATCTGAAAAGGACTTGCACAAGGGAGCCGTGCCTAGTGGGTCTCTTATAACTGTTCAACAGCCACAATGCTGTAGAGCTATTGAAAGACCAGGTGGCGATGTTAACCCAACTGGCCAAGCTAACTGCCTGTTTCAAGTGCTTGTTGAGTATCTGGTGGATTTAAAGTTCTCAACTGTTAGTCAAACTGAAGAAATATGCATTTCAGCTGTGCATCAATCAAGTGGTTACTCCTTCAATCTTACATGGGTAAATAGAGCTGGTGGAAAGGAACCAGAACTTCTGTACCGCGTCTTATCCTTGGGGACATTTGAAAGGGTTGCACCAGAATGGATGAAGGATGCCATAATGTTCAGCACAACCATGTGCCCTAAATTCTTTGAAAGGTTATCCCGAGTTGTCAAGCTGCACACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

311

Amino Acids

35.42

Weight (kDa)

5.8

Isoelectric Point (pI)

60.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 566
AarI CACCTGC 1 cut(s) 385
Acc36I ACCTGC 2 cut(s) 118, 385
AccII CGCG 1 cut(s) 807
AciI CCGC 2 cut(s) 122, 805
AcoI YGGCCR 1 cut(s) 631
AcsI RAATTY 2 cut(s) 325, 890
AcuI CTGAAG 3 cut(s) 306, 359, 726
AfaI GTAC 3 cut(s) 35, 373, 803
AfiI CCNNNNNNNGG 1 cut(s) 383
AgsI TTSAA 9 cut(s) 145, 236, 497, 575, 602, 653, 754, 830, 899
AjnI CCWGG 2 cut(s) 240, 607
AloI GAACNNNNNNTCC 2 cut(s) 668, 700
AluBI AGCT 6 cut(s) 247, 596, 638, 725, 776, 922
AluI AGCT 6 cut(s) 247, 596, 638, 725, 776, 922
Alw26I GTCTC 2 cut(s) 455, 564
AlwNI CAGNNNCTG 1 cut(s) 454
Ama87I CYCGRG 1 cut(s) 909
AoxI GGCC 1 cut(s) 631
ApeKI GCWGC 2 cut(s) 119, 922
ApoI RAATTY 2 cut(s) 325, 890
ArsI GACNNNNNNTTYG 2 cut(s) 44, 76
AspS9I GGNCC 1 cut(s) 210
AvaI CYCGRG 1 cut(s) 909
AvaII GGWCC 1 cut(s) 210
BaeGI GKGCMC 1 cut(s) 887
BaeI ACNNNNGTAYC 2 cut(s) 785, 818
BalI TGGCCA 1 cut(s) 633
BbsI GAAGAC 1 cut(s) 485
BbvI GCAGC 2 cut(s) 106, 909
BceAI ACGGC 1 cut(s) 530
BciT130I CCWGG 2 cut(s) 242, 609
BcoDI GTCTC 2 cut(s) 455, 564
BfaI CTAG 3 cut(s) 381, 486, 552
BfmI CTRYAG 1 cut(s) 589
BfuAI ACCTGC 2 cut(s) 118, 385
BglII AGATCT 1 cut(s) 181
BisI GCNGC 2 cut(s) 120, 923
BlsI GCNGC 2 cut(s) 121, 924
Bme1390I CCNGG 2 cut(s) 242, 609
Bme18I GGWCC 1 cut(s) 210
BmeT110I CYCGRG 1 cut(s) 909
BmgT120I GGNCC 1 cut(s) 210
BmiI GGNNCC 3 cut(s) 302, 544, 789
BmrFI CCNGG 2 cut(s) 242, 609
BmsI GCATC 2 cut(s) 739, 847
BpiI GAAGAC 1 cut(s) 485
BpuEI CTTGAG 1 cut(s) 29
BsaAI YACGTR 1 cut(s) 33
BsaI GGTCTC 1 cut(s) 564
BsaJI CCNNGG 1 cut(s) 816
Bsc4I CCNNNNNNNGG 1 cut(s) 383
Bse1I ACTGG 1 cut(s) 634
BseBI CCWGG 2 cut(s) 242, 609
BseDI CCNNGG 1 cut(s) 816
BseGI GGATG 2 cut(s) 855, 862
BseLI CCNNNNNNNGG 1 cut(s) 383
BseMII CTCAG 1 cut(s) 450
BseNI ACTGG 1 cut(s) 634
BseRI GAGGAG 1 cut(s) 378
BseSI GKGCMC 1 cut(s) 887
BseXI GCAGC 2 cut(s) 106, 909
BsgI GTGCAG 1 cut(s) 908
Bsh1236I CGCG 1 cut(s) 807
BshFI GGCC 1 cut(s) 633
BsiHKCI CYCGRG 1 cut(s) 909
BslFI GGGAC 2 cut(s) 436, 835
BslI CCNNNNNNNGG 1 cut(s) 383
BsmAI GTCTC 2 cut(s) 455, 564
BsmFI GGGAC 2 cut(s) 436, 835
BsnI GGCC 1 cut(s) 633
Bso31I GGTCTC 1 cut(s) 564
BsoBI CYCGRG 1 cut(s) 909
Bsp1286I GDGCHC 1 cut(s) 887
Bsp1407I TGTACA 1 cut(s) 371
Bsp143I GATC 2 cut(s) 85, 181
BspACI CCGC 2 cut(s) 122, 805
BspANI GGCC 1 cut(s) 633
BspCNI CTCAG 1 cut(s) 451
BspFNI CGCG 1 cut(s) 807
BspLI GGNNCC 3 cut(s) 302, 544, 789
BspMI ACCTGC 2 cut(s) 118, 385
BspTNI GGTCTC 1 cut(s) 564
BsrGI TGTACA 1 cut(s) 371
BsrI ACTGG 1 cut(s) 634
BssECI CCNNGG 1 cut(s) 816
BssMI GATC 2 cut(s) 85, 181
BssT1I CCWWGG 1 cut(s) 816
Bst2UI CCWGG 2 cut(s) 242, 609
Bst4CI ACNGT 2 cut(s) 571, 694
Bst6I CTCTTC 1 cut(s) 252
BstAUI TGTACA 1 cut(s) 371
BstBAI YACGTR 1 cut(s) 33
BstC8I GCNNGC 1 cut(s) 406
BstDEI CTNAG 2 cut(s) 459, 512
BstF5I GGATG 2 cut(s) 855, 862
BstFNI CGCG 1 cut(s) 807
BstKTI GATC 2 cut(s) 88, 184
BstMAI GTCTC 2 cut(s) 455, 564
BstMBI GATC 2 cut(s) 85, 181
BstNI CCWGG 2 cut(s) 242, 609
BstSCI CCNGG 2 cut(s) 240, 607
BstSFI CTRYAG 1 cut(s) 589
BstSLI GKGCMC 1 cut(s) 887
BstSNI TACGTA 1 cut(s) 33
BstUI CGCG 1 cut(s) 807
BstV1I GCAGC 2 cut(s) 106, 909
BstV2I GAAGAC 1 cut(s) 485
BstX2I RGATCY 1 cut(s) 181
BstYI RGATCY 1 cut(s) 181
BsuRI GGCC 1 cut(s) 633
BtgZI GCGATG 1 cut(s) 630
BtsCI GGATG 2 cut(s) 855, 862
BveI ACCTGC 2 cut(s) 118, 385
Cac8I GCNNGC 1 cut(s) 406
CaiI CAGNNNCTG 1 cut(s) 454
Cfr13I GGNCC 1 cut(s) 210
CseI GACGC 1 cut(s) 796
CsiI ACCWGGT 1 cut(s) 607
Csp6I GTAC 3 cut(s) 34, 372, 802
CspCI CAANNNNNGTGG 2 cut(s) 177, 212
CviAII CATG 4 cut(s) 37, 103, 762, 880
CviQI GTAC 3 cut(s) 34, 372, 802
DdeI CTNAG 2 cut(s) 459, 512
DpnI GATC 2 cut(s) 87, 183
DpnII GATC 2 cut(s) 85, 181
DraI TTTAAA 1 cut(s) 681
EaeI YGGCCR 1 cut(s) 631
Eam1104I CTCTTC 1 cut(s) 252
EarI CTCTTC 1 cut(s) 252
Eco105I TACGTA 1 cut(s) 33
Eco130I CCWWGG 1 cut(s) 816
Eco31I GGTCTC 1 cut(s) 564
Eco47I GGWCC 1 cut(s) 210
Eco57I CTGAAG 3 cut(s) 306, 359, 726
Eco88I CYCGRG 1 cut(s) 909
EcoRII CCWGG 2 cut(s) 240, 607
EcoT14I CCWWGG 1 cut(s) 816
EcoT22I ATGCAT 1 cut(s) 719
ErhI CCWWGG 1 cut(s) 816
FaeI CATG 4 cut(s) 40, 106, 765, 883
FaqI GGGAC 2 cut(s) 436, 835
FatI CATG 4 cut(s) 36, 102, 761, 879
Fnu4HI GCNGC 2 cut(s) 120, 923
FokI GGATG 2 cut(s) 862, 869
Fsp4HI GCNGC 2 cut(s) 120, 923
FspBI CTAG 3 cut(s) 381, 486, 552
GluI GCNGC 2 cut(s) 120, 923
HaeIII GGCC 1 cut(s) 633
HgaI GACGC 1 cut(s) 796
Hin1II CATG 4 cut(s) 40, 106, 765, 883
HincII GTYRAC 1 cut(s) 622
HindII GTYRAC 1 cut(s) 622
HinfI GANTC 1 cut(s) 518
HpaI GTTAAC 1 cut(s) 622
Hpy166II GTNNAC 4 cut(s) 213, 372, 374, 622
Hpy188I TCNGA 8 cut(s) 64, 151, 186, 286, 305, 397, 460, 523
Hpy188III TCNNGA 3 cut(s) 89, 497, 909
Hpy8I GTNNAC 4 cut(s) 213, 372, 374, 622
HpyAV CCTTC 4 cut(s) 334, 492, 760, 847
HpyCH4III ACNGT 2 cut(s) 571, 694
HpyCH4IV ACGT 2 cut(s) 32, 439
HpyCH4V TGCA 6 cut(s) 313, 535, 717, 730, 839, 925
HpyF3I CTNAG 2 cut(s) 459, 512
HpySE526I ACGT 2 cut(s) 32, 439
Hsp92II CATG 4 cut(s) 40, 106, 765, 883
KspAI GTTAAC 1 cut(s) 622
Kzo9I GATC 2 cut(s) 85, 181
LmnI GCTCC 4 cut(s) 124, 244, 306, 542
Lsp1109I GCAGC 2 cut(s) 106, 909
LweI GCATC 2 cut(s) 739, 847
MabI ACCWGGT 1 cut(s) 607
MaeI CTAG 3 cut(s) 381, 486, 552
MaeII ACGT 2 cut(s) 32, 439
MaeIII GTNAC 2 cut(s) 414, 743
MalI GATC 2 cut(s) 87, 183
MboI GATC 2 cut(s) 85, 181
MboII GAAGA 9 cut(s) 64, 269, 280, 287, 299, 410, 435, 485, 719
MfeI CAATTG 1 cut(s) 140
MflI RGATCY 1 cut(s) 181
MhlI GDGCHC 1 cut(s) 887
MlsI TGGCCA 1 cut(s) 633
MluCI AATT 3 cut(s) 140, 325, 890
MluNI TGGCCA 1 cut(s) 633
MmeI TCCRAC 3 cut(s) 42, 48, 160
MnlI CCTC 5 cut(s) 153, 291, 356, 438, 460
Mox20I TGGCCA 1 cut(s) 633
Mph1103I ATGCAT 1 cut(s) 719
MscI TGGCCA 1 cut(s) 633
MseI TTAA 5 cut(s) 78, 177, 251, 621, 680
MslI CAYNNNNRTG 2 cut(s) 844, 878
Msp20I TGGCCA 1 cut(s) 633
MspA1I CMGCKG 1 cut(s) 725
MspR9I CCNGG 2 cut(s) 242, 609
MunI CAATTG 1 cut(s) 140
MvaI CCWGG 2 cut(s) 242, 609
MvnI CGCG 1 cut(s) 807
NdeII GATC 2 cut(s) 85, 181
NlaIII CATG 4 cut(s) 40, 106, 765, 883
NlaIV GGNNCC 3 cut(s) 302, 544, 789
NmeAIII GCCGAG 1 cut(s) 95
NmuCI GTSAC 1 cut(s) 414
NsiI ATGCAT 1 cut(s) 719
PaqCI CACCTGC 1 cut(s) 385
PfeI GAWTC 1 cut(s) 518
PkrI GCNGC 2 cut(s) 121, 924
Ppu21I YACGTR 1 cut(s) 33
PsiI TTATAA 1 cut(s) 566
Psp6I CCWGG 2 cut(s) 240, 607
PspGI CCWGG 2 cut(s) 240, 607
PspN4I GGNNCC 3 cut(s) 302, 544, 789
PspPI GGNCC 1 cut(s) 210
PstNI CAGNNNCTG 1 cut(s) 454
PsuI RGATCY 1 cut(s) 181
PvuII CAGCTG 1 cut(s) 725
RsaI GTAC 3 cut(s) 35, 373, 803
RsaNI GTAC 3 cut(s) 34, 372, 802
RseI CAYNNNNRTG 2 cut(s) 844, 878
SaqAI TTAA 5 cut(s) 78, 177, 251, 621, 680
SatI GCNGC 2 cut(s) 120, 923
Sau3AI GATC 2 cut(s) 85, 181
Sau96I GGNCC 1 cut(s) 210
ScrFI CCNGG 2 cut(s) 242, 609
SduI GDGCHC 1 cut(s) 887
SexAI ACCWGGT 1 cut(s) 607
SfaNI GCATC 2 cut(s) 739, 847
SfcI CTRYAG 1 cut(s) 589
SinI GGWCC 1 cut(s) 210
SmiMI CAYNNNNRTG 2 cut(s) 844, 878
SmlI CTYRAG 1 cut(s) 44
SmoI CTYRAG 1 cut(s) 44
SnaBI TACGTA 1 cut(s) 33
Sse9I AATT 3 cut(s) 140, 325, 890
SsiI CCGC 2 cut(s) 122, 805
SspMI CTAG 3 cut(s) 381, 486, 552
StyD4I CCNGG 2 cut(s) 240, 607
StyI CCWWGG 1 cut(s) 816
TaaI ACNGT 2 cut(s) 571, 694
TaiI ACGT 2 cut(s) 35, 442
TaqI TCGA 2 cut(s) 17, 50
TaqII GACCGA 1 cut(s) 402
TasI AATT 3 cut(s) 140, 325, 890
TatI WGTACW 1 cut(s) 371
TfiI GAWTC 1 cut(s) 518
Tru1I TTAA 5 cut(s) 78, 177, 251, 621, 680
Tru9I TTAA 5 cut(s) 78, 177, 251, 621, 680
TseFI GTSAC 1 cut(s) 414
TseI GCWGC 2 cut(s) 119, 922
Tsp45I GTSAC 1 cut(s) 414
TspDTI ATGAA 6 cut(s) 53, 91, 237, 288, 519, 866
VpaK11BI GGWCC 1 cut(s) 210
XapI RAATTY 2 cut(s) 325, 890
XspI CTAG 3 cut(s) 381, 486, 552
Zsp2I ATGCAT 1 cut(s) 719
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.