Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006259

Physical Location & Seq

Genomic Coordinates Forward (+)

52168295 .. 52173336

Gene Structure 5042 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32868

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGATGCTCTCTATTCAAAGCTCTACGACAAGTACTCCAAAATTAAGACCAAAAAGTTTTCCGAATTGGATCAACAAAATAAAGATCAAGAAGACAAGTTTTTGAACTATATCCAAGTTGCGGAGGAGTACATTCAACATGTGAAAAGTGAAAATGAGCAGTTGCATTCGCAGCTTAATGACCTTAGAAGTGAAGTGGCTTCTCTCAGGTCCGCAAAAGATGAACAATGTACCGAGTACCAGAAGCTTTTAATGGAAGAAAACAGGAAAAATAAAGAGCTTTCTGAAGAAGTAACAAAGCTCCAAAAGATGCTACAGGCGGAAACCTTTAGCAGAAGGAACGATAGCAACACAGACAATGAGGAATTATGTATGTCTGGTGGCGGTGAAGTATCAGGAGAACCAGGCAGTAGCTCAAAGAGAAGAGATACAAATAAACGTAAGAGGCATTCTGGGGTGGAGACAGGGGACATCAATATGCCTTTTAGAAGCCATGATGATAGTGCCATACCAAGAAAATCTGCAAAGGACTTGCACAAGGAAGCTGTGCATGGGGAATCTCTTGTTGGTTCTCATAAGACCAATGTAAACTTTCAGCCACAGTGCTGTAGAAATCTTGAAGGATCAGGTGGCAGTGTGGCTGTCACATCTAACTGCCTGTTTCAAGAGCTTAATGAGTACGTGTGGGGCTTAAAGTTCTCCATTGTTGATCAAACTGAAGAAACATGCATTTCAGCAGTGCATCAATCAAGCGGTTACTCCTTCACTCTGACATGGGTGAACAGAGCTACAGGGGAAAGGCCAGAACTAGTGTACCGTTGTTTATCCTTGGGGACTTTTGAGAGGGTAGCGCCGGAGTGGATGACTGATGAGCTTATGTTTAGCACAACCATGTGCCCTATCTTCTTTGAAAGGGTATCCCGTGTTGTTAAGATGTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

313

Amino Acids

35.84

Weight (kDa)

5.73

Isoelectric Point (pI)

55.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7806	PF25091	217 - 311	9.1e-45	Domain of unknown function (DUF7806)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20070 AT3G20070 AT3G20070 AT3G20070
fragaria_vesca	FvH4_3g28310 FvH4_3g28310
malus_domestica	MD03G1170100.v1.1 MD11G1187600.v1.1
prunus_persica	Prupe.4G257000_v2.0.a1 Prupe.4G257000_v2.0.a1 Prupe.4G257000_v2.0.a1 Prupe.4G257000_v2.0.a1 Prupe.4G257000_v2.0.a1 Prupe.4G257000_v2.0.a1
pyrus_communis	pycom03g12650 pycom11g16430
rosa_chinensis	RchiOBHm_Chr5g0051191
rosa_laevigata	RLG00000034761
rosa_multiflora	Rmu_sc0012841.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029170
rosa_rugosa	Rorug05G0266600
rosa_samantha	Rh5AG338700 Rh5BG348700 Rh5CG375700 Rh5DG361600
rosa_wichuraiana	Rw0G023680 Rw5G032000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	122, 213, 320, 384, 753
AclWI	GGATC	2 cut(s)	78, 631
AcuI	CTGAAG	2 cut(s)	306, 738
AfaI	GTAC	6 cut(s)	35, 131, 232, 239, 680, 815
AfiI	CCNNNNNNNGG	1 cut(s)	121
AflIII	ACRYGT	2 cut(s)	139, 681
AgsI	TTSAA	6 cut(s)	18, 106, 137, 620, 665, 911
AhlI	ACTAGT	1 cut(s)	808
AjnI	CCWGG	1 cut(s)	403
AjuI	GAANNNNNNNTTGG	2 cut(s)	549, 581
Alw26I	GTCTC	1 cut(s)	455
AlwI	GGATC	2 cut(s)	78, 631
AoxI	GGCC	1 cut(s)	800
ApeKI	GCWGC	1 cut(s)	172
AspLEI	GCGC	1 cut(s)	853
AspS9I	GGNCC	1 cut(s)	210
AsuHPI	GGTGA	2 cut(s)	398, 790
AvaII	GGWCC	1 cut(s)	210
BaeGI	GKGCMC	1 cut(s)	899
BaeI	ACNNNNGTAYC	2 cut(s)	797, 830
BbsI	GAAGAC	1 cut(s)	99
BbvI	GCAGC	1 cut(s)	184
BciT130I	CCWGG	1 cut(s)	405
BciVI	GTATCC	1 cut(s)	928
BclI	TGATCA	1 cut(s)	709
BcoDI	GTCTC	1 cut(s)	455
BcuI	ACTAGT	1 cut(s)	808
BfaI	CTAG	2 cut(s)	809, 940
BfmI	CTRYAG	3 cut(s)	314, 607, 789
BfoI	RGCGCY	1 cut(s)	854
BfuI	GTATCC	1 cut(s)	928
BisI	GCNGC	1 cut(s)	173
BlsI	GCNGC	1 cut(s)	174
BmcAI	AGTACT	1 cut(s)	35
Bme1390I	CCNGG	1 cut(s)	405
Bme18I	GGWCC	1 cut(s)	210
BmgT120I	GGNCC	1 cut(s)	210
BmrFI	CCNGG	1 cut(s)	405
BmsI	GCATC	2 cut(s)	300, 751
BpiI	GAAGAC	1 cut(s)	99
BsaAI	YACGTR	1 cut(s)	682
BsaJI	CCNNGG	1 cut(s)	828
BsaXI	ACNNNNNCTCC	2 cut(s)	20, 50
Bsc4I	CCNNNNNNNGG	1 cut(s)	121
BseBI	CCWGG	1 cut(s)	405
BseDI	CCNNGG	1 cut(s)	828
BseGI	GGATG	2 cut(s)	10, 867
BseLI	CCNNNNNNNGG	1 cut(s)	121
BseMII	CTCAG	1 cut(s)	220
BseRI	GAGGAG	1 cut(s)	140
BseSI	GKGCMC	1 cut(s)	899
BseXI	GCAGC	1 cut(s)	184
BshFI	GGCC	1 cut(s)	802
BsiSI	CCGG	1 cut(s)	854
BslFI	GGGAC	2 cut(s)	482, 847
BslI	CCNNNNNNNGG	1 cut(s)	121
BsmAI	GTCTC	1 cut(s)	455
BsmFI	GGGAC	2 cut(s)	482, 847
BsmI	GAATGC	2 cut(s)	166, 448
BsnI	GGCC	1 cut(s)	802
Bsp1286I	GDGCHC	1 cut(s)	899
Bsp143I	GATC	4 cut(s)	70, 85, 623, 709
BspACI	CCGC	5 cut(s)	122, 213, 320, 384, 753
BspANI	GGCC	1 cut(s)	802
BspCNI	CTCAG	1 cut(s)	219
BspPI	GGATC	2 cut(s)	78, 631
BssECI	CCNNGG	1 cut(s)	828
BssMI	GATC	4 cut(s)	70, 85, 623, 709
BssT1I	CCWWGG	1 cut(s)	828
Bst2UI	CCWGG	1 cut(s)	405
Bst4CI	ACNGT	2 cut(s)	603, 818
Bst6I	CTCTTC	1 cut(s)	418
BstBAI	YACGTR	1 cut(s)	682
BstDEI	CTNAG	2 cut(s)	185, 206
BstF5I	GGATG	2 cut(s)	10, 867
BstH2I	RGCGCY	1 cut(s)	854
BstHHI	GCGC	1 cut(s)	853
BstKTI	GATC	4 cut(s)	73, 88, 626, 712
BstMAI	GTCTC	1 cut(s)	455
BstMBI	GATC	4 cut(s)	70, 85, 623, 709
BstMWI	GCNNNNNNNGC	1 cut(s)	172
BstNI	CCWGG	1 cut(s)	405
BstNSI	RCATGY	2 cut(s)	143, 729
BstSCI	CCNGG	1 cut(s)	403
BstSFI	CTRYAG	3 cut(s)	314, 607, 789
BstSLI	GKGCMC	1 cut(s)	899
BstV1I	GCAGC	1 cut(s)	184
BstV2I	GAAGAC	1 cut(s)	99
BsuI	GTATCC	1 cut(s)	928
BsuRI	GGCC	1 cut(s)	802
BtsCI	GGATG	2 cut(s)	10, 867
BtsI	GCAGTG	2 cut(s)	640, 744
BtsIMutI	CAGTG	3 cut(s)	608, 640, 744
CfoI	GCGC	1 cut(s)	853
Cfr13I	GGNCC	1 cut(s)	210
Csp6I	GTAC	6 cut(s)	34, 130, 231, 238, 679, 814
CviAII	CATG	6 cut(s)	140, 494, 551, 726, 774, 892
CviQI	GTAC	6 cut(s)	34, 130, 231, 238, 679, 814
DdeI	CTNAG	2 cut(s)	185, 206
DpnI	GATC	4 cut(s)	72, 87, 625, 711
DpnII	GATC	4 cut(s)	70, 85, 623, 709
Eam1104I	CTCTTC	1 cut(s)	418
EarI	CTCTTC	1 cut(s)	418
EciI	GGCGGA	1 cut(s)	335
Eco130I	CCWWGG	1 cut(s)	828
Eco47I	GGWCC	1 cut(s)	210
Eco57I	CTGAAG	2 cut(s)	306, 738
EcoRII	CCWGG	1 cut(s)	403
EcoT14I	CCWWGG	1 cut(s)	828
EcoT22I	ATGCAT	1 cut(s)	731
ErhI	CCWWGG	1 cut(s)	828
FaeI	CATG	6 cut(s)	143, 497, 554, 729, 777, 895
FaqI	GGGAC	2 cut(s)	482, 847
FatI	CATG	6 cut(s)	139, 493, 550, 725, 773, 891
FbaI	TGATCA	1 cut(s)	709
Fnu4HI	GCNGC	1 cut(s)	173
FokI	GGATG	2 cut(s)	17, 874
Fsp4HI	GCNGC	1 cut(s)	173
FspBI	CTAG	2 cut(s)	809, 940
GlaI	GCGC	1 cut(s)	852
GluI	GCNGC	1 cut(s)	173
HaeII	RGCGCY	1 cut(s)	854
HaeIII	GGCC	1 cut(s)	802
HapII	CCGG	1 cut(s)	854
HhaI	GCGC	1 cut(s)	853
Hin1II	CATG	6 cut(s)	143, 497, 554, 729, 777, 895
Hin6I	GCGC	1 cut(s)	851
HinP1I	GCGC	1 cut(s)	851
HindIII	AAGCTT	1 cut(s)	245
HinfI	GANTC	1 cut(s)	557
HpaII	CCGG	1 cut(s)	854
HphI	GGTGA	2 cut(s)	398, 790
Hpy166II	GTNNAC	3 cut(s)	589, 781, 814
Hpy188I	TCNGA	3 cut(s)	64, 286, 771
Hpy188III	TCNNGA	4 cut(s)	89, 396, 617, 665
Hpy8I	GTNNAC	3 cut(s)	589, 781, 814
HpyAV	CCTTC	3 cut(s)	330, 614, 772
HpyCH4III	ACNGT	2 cut(s)	603, 818
HpyCH4IV	ACGT	2 cut(s)	439, 681
HpyCH4V	TGCA	6 cut(s)	166, 524, 535, 550, 729, 742
HpyF10VI	GCNNNNNNNGC	1 cut(s)	172
HpyF3I	CTNAG	2 cut(s)	185, 206
HpySE526I	ACGT	2 cut(s)	439, 681
Hsp92II	CATG	6 cut(s)	143, 497, 554, 729, 777, 895
HspAI	GCGC	1 cut(s)	851
Ksp22I	TGATCA	1 cut(s)	709
Kzo9I	GATC	4 cut(s)	70, 85, 623, 709
LmnI	GCTCC	1 cut(s)	306
Lsp1109I	GCAGC	1 cut(s)	184
LweI	GCATC	2 cut(s)	300, 751
MaeI	CTAG	2 cut(s)	809, 940
MaeII	ACGT	2 cut(s)	439, 681
MaeIII	GTNAC	3 cut(s)	292, 643, 755
MalI	GATC	4 cut(s)	72, 87, 625, 711
MboI	GATC	4 cut(s)	70, 85, 623, 709
MboII	GAAGA	6 cut(s)	104, 269, 299, 435, 731, 895
MhlI	GDGCHC	1 cut(s)	899
MluCI	AATT	3 cut(s)	42, 65, 365
MnlI	CCTC	4 cut(s)	118, 355, 438, 837
Mph1103I	ATGCAT	1 cut(s)	731
MseI	TTAA	6 cut(s)	45, 177, 251, 672, 692, 930
MslI	CAYNNNNRTG	2 cut(s)	476, 890
MspI	CCGG	1 cut(s)	854
MspR9I	CCNGG	1 cut(s)	405
Mva1269I	GAATGC	2 cut(s)	166, 448
MvaI	CCWGG	1 cut(s)	405
MwoI	GCNNNNNNNGC	1 cut(s)	172
NdeII	GATC	4 cut(s)	70, 85, 623, 709
NlaIII	CATG	6 cut(s)	143, 497, 554, 729, 777, 895
NmuCI	GTSAC	1 cut(s)	643
NsiI	ATGCAT	1 cut(s)	731
NspI	RCATGY	2 cut(s)	143, 729
PciI	ACATGT	1 cut(s)	139
PctI	GAATGC	2 cut(s)	166, 448
PfeI	GAWTC	1 cut(s)	557
PkrI	GCNGC	1 cut(s)	174
Ppu21I	YACGTR	1 cut(s)	682
PscI	ACATGT	1 cut(s)	139
Psp6I	CCWGG	1 cut(s)	403
PspGI	CCWGG	1 cut(s)	403
PspPI	GGNCC	1 cut(s)	210
RsaI	GTAC	6 cut(s)	35, 131, 232, 239, 680, 815
RsaNI	GTAC	6 cut(s)	34, 130, 231, 238, 679, 814
RseI	CAYNNNNRTG	2 cut(s)	476, 890
SaqAI	TTAA	6 cut(s)	45, 177, 251, 672, 692, 930
SatI	GCNGC	1 cut(s)	173
Sau3AI	GATC	4 cut(s)	70, 85, 623, 709
Sau96I	GGNCC	1 cut(s)	210
ScaI	AGTACT	1 cut(s)	35
ScrFI	CCNGG	1 cut(s)	405
SduI	GDGCHC	1 cut(s)	899
SfaNI	GCATC	2 cut(s)	300, 751
SfcI	CTRYAG	3 cut(s)	314, 607, 789
SinI	GGWCC	1 cut(s)	210
SmiMI	CAYNNNNRTG	2 cut(s)	476, 890
SpeI	ACTAGT	1 cut(s)	808
Sse9I	AATT	3 cut(s)	42, 65, 365
SsiI	CCGC	5 cut(s)	122, 213, 320, 384, 753
SspMI	CTAG	2 cut(s)	809, 940
StyD4I	CCNGG	1 cut(s)	403
StyI	CCWWGG	1 cut(s)	828
TaaI	ACNGT	2 cut(s)	603, 818
TaiI	ACGT	2 cut(s)	442, 684
TasI	AATT	3 cut(s)	42, 65, 365
TatI	WGTACW	2 cut(s)	33, 129
TfiI	GAWTC	1 cut(s)	557
Tru1I	TTAA	6 cut(s)	45, 177, 251, 672, 692, 930
Tru9I	TTAA	6 cut(s)	45, 177, 251, 672, 692, 930
TscAI	CASTG	3 cut(s)	608, 640, 744
TseFI	GTSAC	1 cut(s)	643
TseI	GCWGC	1 cut(s)	172
Tsp45I	GTSAC	1 cut(s)	643
TspDTI	ATGAA	1 cut(s)	237
TspRI	CASTG	3 cut(s)	608, 640, 744
VpaK11BI	GGWCC	1 cut(s)	210
XceI	RCATGY	2 cut(s)	143, 729
XspI	CTAG	2 cut(s)	809, 940
ZrmI	AGTACT	1 cut(s)	35
Zsp2I	ATGCAT	1 cut(s)	731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.