Rmu_sc0012841.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012841.1
OG0006259
Physical Location & Seq
Reverse (-)
1 .. 649
649 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012841.1_g000001.1.cds

Sequence Viewer

Length: 445 bp
atgctacaggcggaaacctttagcagaaggaacgatagcaacacagacaatgaggaattatgtatgtctggtggtggtgaagtatcaggagaaccaggcagtagctcaaagagaagagatacaaataaacgtaagaggcattctggggcggggacaggggacatcaatatgccttttaggagccatgatgatagtgccataccaagagaatctgcaaaggacttgcacaaggaagctgtgcatagggaatctcttgttggttctcataagaccaatgtaaactttcagccacagtgctgtagaaatcttgaaggatcaggtggcagtgtggctgtcacatctaactgcctgtttcaagagcttaatgagtacgtgtggggcttaaagttctccattgttgatcaaactgaagaaacatgcatttcggcagtgcatcaatcaagcg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

16.23

Weight (kDa)

5.85

Isoelectric Point (pI)

62.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 11, 149
AclWI GGATC 1 cut(s) 322
AcuI CTGAAG 1 cut(s) 429
AfaI GTAC 1 cut(s) 371
AflIII ACRYGT 1 cut(s) 372
AgsI TTSAA 2 cut(s) 311, 356
AjnI CCWGG 1 cut(s) 94
AjuI GAANNNNNNNTTGG 2 cut(s) 240, 272
AluBI AGCT 3 cut(s) 105, 236, 361
AluI AGCT 3 cut(s) 105, 236, 361
AlwI GGATC 1 cut(s) 322
AsuHPI GGTGA 1 cut(s) 89
BciT130I CCWGG 1 cut(s) 96
BclI TGATCA 1 cut(s) 400
BfmI CTRYAG 2 cut(s) 5, 298
Bme1390I CCNGG 1 cut(s) 96
BmiI GGNNCC 1 cut(s) 182
BmrFI CCNGG 1 cut(s) 96
BsaAI YACGTR 1 cut(s) 373
BseBI CCWGG 1 cut(s) 96
BslFI GGGAC 2 cut(s) 166, 173
BsmFI GGGAC 2 cut(s) 166, 173
BsmI GAATGC 1 cut(s) 139
Bsp143I GATC 2 cut(s) 314, 400
BspACI CCGC 2 cut(s) 11, 149
BspLI GGNNCC 1 cut(s) 182
BspPI GGATC 1 cut(s) 322
BssMI GATC 2 cut(s) 314, 400
Bst2UI CCWGG 1 cut(s) 96
Bst4CI ACNGT 1 cut(s) 294
Bst6I CTCTTC 1 cut(s) 109
BstBAI YACGTR 1 cut(s) 373
BstKTI GATC 2 cut(s) 317, 403
BstMBI GATC 2 cut(s) 314, 400
BstNI CCWGG 1 cut(s) 96
BstNSI RCATGY 1 cut(s) 420
BstSCI CCNGG 1 cut(s) 94
BstSFI CTRYAG 2 cut(s) 5, 298
BtsI GCAGTG 2 cut(s) 331, 435
BtsIMutI CAGTG 3 cut(s) 299, 331, 435
Csp6I GTAC 1 cut(s) 370
CviAII CATG 2 cut(s) 185, 417
CviJI RGCY 7 cut(s) 105, 183, 236, 289, 332, 361, 381
CviKI_1 RGCY 7 cut(s) 105, 183, 236, 289, 332, 361, 381
CviQI GTAC 1 cut(s) 370
DpnI GATC 2 cut(s) 316, 402
DpnII GATC 2 cut(s) 314, 400
Eam1104I CTCTTC 1 cut(s) 109
EarI CTCTTC 1 cut(s) 109
EciI GGCGGA 1 cut(s) 26
Eco57I CTGAAG 1 cut(s) 429
EcoRII CCWGG 1 cut(s) 94
EcoT22I ATGCAT 1 cut(s) 422
FaeI CATG 2 cut(s) 188, 420
FaiI YATR 8 cut(s) 61, 65, 170, 186, 200, 243, 267, 418
FaqI GGGAC 2 cut(s) 166, 173
FatI CATG 2 cut(s) 184, 416
FauI CCCGC 1 cut(s) 142
FbaI TGATCA 1 cut(s) 400
Hin1II CATG 2 cut(s) 188, 420
HinfI GANTC 2 cut(s) 209, 248
HphI GGTGA 1 cut(s) 89
Hpy166II GTNNAC 1 cut(s) 280
Hpy188III TCNNGA 3 cut(s) 87, 308, 356
Hpy8I GTNNAC 1 cut(s) 280
HpyAV CCTTC 2 cut(s) 21, 305
HpyCH4III ACNGT 1 cut(s) 294
HpyCH4IV ACGT 2 cut(s) 130, 372
HpyCH4V TGCA 5 cut(s) 215, 226, 241, 420, 433
HpySE526I ACGT 2 cut(s) 130, 372
Hsp92II CATG 2 cut(s) 188, 420
Ksp22I TGATCA 1 cut(s) 400
Kzo9I GATC 2 cut(s) 314, 400
LmnI GCTCC 1 cut(s) 180
LpnPI CCDG 8 cut(s) 54, 72, 81, 108, 129, 141, 303, 362
MaeII ACGT 2 cut(s) 130, 372
MaeIII GTNAC 1 cut(s) 334
MalI GATC 2 cut(s) 316, 402
MboI GATC 2 cut(s) 314, 400
MboII GAAGA 2 cut(s) 126, 422
MluCI AATT 1 cut(s) 56
MnlI CCTC 2 cut(s) 46, 129
Mph1103I ATGCAT 1 cut(s) 422
MseI TTAA 2 cut(s) 363, 383
MslI CAYNNNNRTG 1 cut(s) 167
MspR9I CCNGG 1 cut(s) 96
Mva1269I GAATGC 1 cut(s) 139
MvaI CCWGG 1 cut(s) 96
NdeII GATC 2 cut(s) 314, 400
NlaIII CATG 2 cut(s) 188, 420
NlaIV GGNNCC 1 cut(s) 182
NmuCI GTSAC 1 cut(s) 334
NsiI ATGCAT 1 cut(s) 422
NspI RCATGY 1 cut(s) 420
PctI GAATGC 1 cut(s) 139
PfeI GAWTC 2 cut(s) 209, 248
Ppu21I YACGTR 1 cut(s) 373
Psp6I CCWGG 1 cut(s) 94
PspGI CCWGG 1 cut(s) 94
PspN4I GGNNCC 1 cut(s) 182
RsaI GTAC 1 cut(s) 371
RsaNI GTAC 1 cut(s) 370
RseI CAYNNNNRTG 1 cut(s) 167
SaqAI TTAA 2 cut(s) 363, 383
Sau3AI GATC 2 cut(s) 314, 400
ScrFI CCNGG 1 cut(s) 96
SetI ASST 7 cut(s) 20, 107, 133, 238, 322, 363, 375
SfcI CTRYAG 2 cut(s) 5, 298
SmiMI CAYNNNNRTG 1 cut(s) 167
Sse9I AATT 1 cut(s) 56
SsiI CCGC 2 cut(s) 11, 149
StyD4I CCNGG 1 cut(s) 94
TaaI ACNGT 1 cut(s) 294
TaiI ACGT 2 cut(s) 133, 375
TasI AATT 1 cut(s) 56
TfiI GAWTC 2 cut(s) 209, 248
Tru1I TTAA 2 cut(s) 363, 383
Tru9I TTAA 2 cut(s) 363, 383
TscAI CASTG 3 cut(s) 299, 331, 435
TseFI GTSAC 1 cut(s) 334
Tsp45I GTSAC 1 cut(s) 334
TspRI CASTG 3 cut(s) 299, 331, 435
XceI RCATGY 1 cut(s) 420
Zsp2I ATGCAT 1 cut(s) 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.