Rw0G023680

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig01097
OG0006259
Physical Location & Seq
Forward (+)
165115 .. 169475
4361 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G023680.1

Sequence Viewer

Length: 942 bp
ATGGATGCTCTCTATTCAAAGCTCTACGACAAGTACTCCAAAATCAAGACCAAAAAGTTTTCCGAATTGGATCAACAAAATAAAGATCAAGAAGACAAGTTTTTGAACTATATCCAAGTTGCGGAGGAGTACATTCAACATGTGAAAAGTGAAAATGAGCAGTTGCATTCGCAGCTTAATGACCTTAGAAGTGAAGTGGCTTCTCTCAGGTCCGCAAAAGATGAACAATGTACCGAGTACCAGAAGCTTTTAATGGAAGAAAACAGGAAAAATAAAGAGCTTTCTGAAGAAGTAACAAAGCTCCAAAAGATGATACAGGCGGAAACCTTTAGCAGAAGGAAGGATAGCAACACAGACAATGAGGAATTATGTATGTCTGGTGGTGGTGAAGTATCAGGAGAACCAGGCAGTAGCTCAAAGAGAAGAGATACAAATAAACGTAAGAGGCATTCTGGGGCGGAGACAGGGGACATCAATATGCCTTTTAGGAGCCATGATGATAGTGCAATACCAAGAGAATCTGCAAAGGACTTACACAAGGAAGCTGTGCGTGGGGAATCTCTTGTTGGTTCTCATAAGACCAATGTAAACTTTCAGCCACAGTGCTGTCGAAATCTTGAAGGATCAGGTGGCAGTGTGGCTGTCACATCTAACTGCCTGTTTCAAGAGCTTAATGAGTACGTGTGGGGCTTAAAGTTCTCCATTGTTGATCAAACTGAAGAAACATGCATTTCAGCAGTGCATCAATCAAGCGGTTACTCCTTCACTCTGACATGGGTGAACAGAGCTACAGGGGAAAGGCCAGAACTAGTGTACCGTTGTTTATCCTTGGGGACTTTTGAGAGGGTAGCGCCAGAGTGGATGACTGATGAGCTTATGTTTAGCACAACCATGTGCCCTATCTTCTTCGAAAGGGTATCCCGTGTTGTTAAGATGTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

313

Amino Acids

35.84

Weight (kDa)

5.67

Isoelectric Point (pI)

54.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7806 PF25091 217 - 311 9.1e-45 Domain of unknown function (DUF7806)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 122, 213, 320, 458, 753
AclWI GGATC 2 cut(s) 78, 631
AcuI CTGAAG 2 cut(s) 306, 738
AfaI GTAC 6 cut(s) 35, 131, 232, 239, 680, 815
AfiI CCNNNNNNNGG 1 cut(s) 121
AflIII ACRYGT 2 cut(s) 139, 681
AgsI TTSAA 5 cut(s) 18, 106, 137, 620, 665
AhlI ACTAGT 1 cut(s) 808
AjnI CCWGG 1 cut(s) 403
AjuI GAANNNNNNNTTGG 2 cut(s) 549, 581
Alw26I GTCTC 1 cut(s) 455
AlwI GGATC 2 cut(s) 78, 631
AoxI GGCC 1 cut(s) 800
ApeKI GCWGC 1 cut(s) 172
AspLEI GCGC 1 cut(s) 853
AspS9I GGNCC 1 cut(s) 210
AsuHPI GGTGA 2 cut(s) 398, 790
AsuII TTCGAA 1 cut(s) 909
AvaII GGWCC 1 cut(s) 210
BaeGI GKGCMC 1 cut(s) 899
BaeI ACNNNNGTAYC 2 cut(s) 797, 830
BbsI GAAGAC 1 cut(s) 99
BbvI GCAGC 1 cut(s) 184
BciT130I CCWGG 1 cut(s) 405
BciVI GTATCC 1 cut(s) 928
BclI TGATCA 1 cut(s) 709
BcoDI GTCTC 1 cut(s) 455
BcuI ACTAGT 1 cut(s) 808
BfaI CTAG 2 cut(s) 809, 940
BfmI CTRYAG 1 cut(s) 789
BfoI RGCGCY 1 cut(s) 854
BfuI GTATCC 1 cut(s) 928
BisI GCNGC 1 cut(s) 173
BlsI GCNGC 1 cut(s) 174
BmcAI AGTACT 1 cut(s) 35
Bme1390I CCNGG 1 cut(s) 405
Bme18I GGWCC 1 cut(s) 210
BmgT120I GGNCC 1 cut(s) 210
BmiI GGNNCC 1 cut(s) 491
BmrFI CCNGG 1 cut(s) 405
BmsI GCATC 1 cut(s) 751
BpiI GAAGAC 1 cut(s) 99
Bpu14I TTCGAA 1 cut(s) 909
BsaAI YACGTR 1 cut(s) 682
BsaJI CCNNGG 1 cut(s) 828
BsaXI ACNNNNNCTCC 2 cut(s) 20, 50
Bsc4I CCNNNNNNNGG 1 cut(s) 121
BseBI CCWGG 1 cut(s) 405
BseDI CCNNGG 1 cut(s) 828
BseGI GGATG 2 cut(s) 10, 867
BseLI CCNNNNNNNGG 1 cut(s) 121
BseMII CTCAG 1 cut(s) 220
BseRI GAGGAG 1 cut(s) 140
BseSI GKGCMC 1 cut(s) 899
BseXI GCAGC 1 cut(s) 184
BshFI GGCC 1 cut(s) 802
BslFI GGGAC 2 cut(s) 482, 847
BslI CCNNNNNNNGG 1 cut(s) 121
BsmAI GTCTC 1 cut(s) 455
BsmFI GGGAC 2 cut(s) 482, 847
BsmI GAATGC 2 cut(s) 166, 448
BsnI GGCC 1 cut(s) 802
Bsp119I TTCGAA 1 cut(s) 909
Bsp1286I GDGCHC 1 cut(s) 899
Bsp143I GATC 4 cut(s) 70, 85, 623, 709
BspACI CCGC 5 cut(s) 122, 213, 320, 458, 753
BspANI GGCC 1 cut(s) 802
BspCNI CTCAG 1 cut(s) 219
BspLI GGNNCC 1 cut(s) 491
BspPI GGATC 2 cut(s) 78, 631
BspT104I TTCGAA 1 cut(s) 909
BssECI CCNNGG 1 cut(s) 828
BssMI GATC 4 cut(s) 70, 85, 623, 709
BssT1I CCWWGG 1 cut(s) 828
Bst2UI CCWGG 1 cut(s) 405
Bst4CI ACNGT 2 cut(s) 603, 818
Bst6I CTCTTC 1 cut(s) 418
BstBAI YACGTR 1 cut(s) 682
BstBI TTCGAA 1 cut(s) 909
BstDEI CTNAG 2 cut(s) 185, 206
BstF5I GGATG 2 cut(s) 10, 867
BstH2I RGCGCY 1 cut(s) 854
BstHHI GCGC 1 cut(s) 853
BstKTI GATC 4 cut(s) 73, 88, 626, 712
BstMAI GTCTC 1 cut(s) 455
BstMBI GATC 4 cut(s) 70, 85, 623, 709
BstMWI GCNNNNNNNGC 1 cut(s) 172
BstNI CCWGG 1 cut(s) 405
BstNSI RCATGY 2 cut(s) 143, 729
BstSCI CCNGG 1 cut(s) 403
BstSFI CTRYAG 1 cut(s) 789
BstSLI GKGCMC 1 cut(s) 899
BstV1I GCAGC 1 cut(s) 184
BstV2I GAAGAC 1 cut(s) 99
BsuI GTATCC 1 cut(s) 928
BsuRI GGCC 1 cut(s) 802
BtsCI GGATG 2 cut(s) 10, 867
BtsI GCAGTG 2 cut(s) 640, 744
BtsIMutI CAGTG 3 cut(s) 608, 640, 744
CfoI GCGC 1 cut(s) 853
Cfr13I GGNCC 1 cut(s) 210
Csp6I GTAC 6 cut(s) 34, 130, 231, 238, 679, 814
CviAII CATG 5 cut(s) 140, 494, 726, 774, 892
CviQI GTAC 6 cut(s) 34, 130, 231, 238, 679, 814
DdeI CTNAG 2 cut(s) 185, 206
DpnI GATC 4 cut(s) 72, 87, 625, 711
DpnII GATC 4 cut(s) 70, 85, 623, 709
Eam1104I CTCTTC 1 cut(s) 418
EarI CTCTTC 1 cut(s) 418
EciI GGCGGA 2 cut(s) 335, 473
Eco130I CCWWGG 1 cut(s) 828
Eco47I GGWCC 1 cut(s) 210
Eco57I CTGAAG 2 cut(s) 306, 738
EcoRII CCWGG 1 cut(s) 403
EcoT14I CCWWGG 1 cut(s) 828
EcoT22I ATGCAT 1 cut(s) 731
ErhI CCWWGG 1 cut(s) 828
FaeI CATG 5 cut(s) 143, 497, 729, 777, 895
FaqI GGGAC 2 cut(s) 482, 847
FatI CATG 5 cut(s) 139, 493, 725, 773, 891
FbaI TGATCA 1 cut(s) 709
Fnu4HI GCNGC 1 cut(s) 173
FokI GGATG 2 cut(s) 17, 874
Fsp4HI GCNGC 1 cut(s) 173
FspBI CTAG 2 cut(s) 809, 940
GlaI GCGC 1 cut(s) 852
GluI GCNGC 1 cut(s) 173
HaeII RGCGCY 1 cut(s) 854
HaeIII GGCC 1 cut(s) 802
HhaI GCGC 1 cut(s) 853
Hin1II CATG 5 cut(s) 143, 497, 729, 777, 895
Hin6I GCGC 1 cut(s) 851
HinP1I GCGC 1 cut(s) 851
HindIII AAGCTT 1 cut(s) 245
HinfI GANTC 2 cut(s) 518, 557
HphI GGTGA 2 cut(s) 398, 790
Hpy166II GTNNAC 3 cut(s) 589, 781, 814
Hpy188I TCNGA 3 cut(s) 64, 286, 771
Hpy188III TCNNGA 5 cut(s) 46, 89, 396, 617, 665
Hpy8I GTNNAC 3 cut(s) 589, 781, 814
HpyAV CCTTC 4 cut(s) 330, 334, 614, 772
HpyCH4III ACNGT 2 cut(s) 603, 818
HpyCH4IV ACGT 2 cut(s) 439, 681
HpyCH4V TGCA 5 cut(s) 166, 506, 524, 729, 742
HpyF10VI GCNNNNNNNGC 1 cut(s) 172
HpyF3I CTNAG 2 cut(s) 185, 206
HpySE526I ACGT 2 cut(s) 439, 681
Hsp92II CATG 5 cut(s) 143, 497, 729, 777, 895
HspAI GCGC 1 cut(s) 851
Ksp22I TGATCA 1 cut(s) 709
Kzo9I GATC 4 cut(s) 70, 85, 623, 709
LmnI GCTCC 2 cut(s) 306, 489
Lsp1109I GCAGC 1 cut(s) 184
LweI GCATC 1 cut(s) 751
MaeI CTAG 2 cut(s) 809, 940
MaeII ACGT 2 cut(s) 439, 681
MaeIII GTNAC 3 cut(s) 292, 643, 755
MalI GATC 4 cut(s) 72, 87, 625, 711
MboI GATC 4 cut(s) 70, 85, 623, 709
MboII GAAGA 7 cut(s) 104, 269, 299, 435, 731, 895, 898
MhlI GDGCHC 1 cut(s) 899
MluCI AATT 2 cut(s) 65, 365
MnlI CCTC 4 cut(s) 118, 355, 438, 837
Mph1103I ATGCAT 1 cut(s) 731
MseI TTAA 5 cut(s) 177, 251, 672, 692, 930
MslI CAYNNNNRTG 2 cut(s) 476, 890
MspR9I CCNGG 1 cut(s) 405
Mva1269I GAATGC 2 cut(s) 166, 448
MvaI CCWGG 1 cut(s) 405
MwoI GCNNNNNNNGC 1 cut(s) 172
NdeII GATC 4 cut(s) 70, 85, 623, 709
NlaIII CATG 5 cut(s) 143, 497, 729, 777, 895
NlaIV GGNNCC 1 cut(s) 491
NmuCI GTSAC 1 cut(s) 643
NsiI ATGCAT 1 cut(s) 731
NspI RCATGY 2 cut(s) 143, 729
NspV TTCGAA 1 cut(s) 909
PciI ACATGT 1 cut(s) 139
PctI GAATGC 2 cut(s) 166, 448
PfeI GAWTC 2 cut(s) 518, 557
PkrI GCNGC 1 cut(s) 174
Ppu21I YACGTR 1 cut(s) 682
PscI ACATGT 1 cut(s) 139
Psp6I CCWGG 1 cut(s) 403
PspGI CCWGG 1 cut(s) 403
PspN4I GGNNCC 1 cut(s) 491
PspPI GGNCC 1 cut(s) 210
RsaI GTAC 6 cut(s) 35, 131, 232, 239, 680, 815
RsaNI GTAC 6 cut(s) 34, 130, 231, 238, 679, 814
RseI CAYNNNNRTG 2 cut(s) 476, 890
SaqAI TTAA 5 cut(s) 177, 251, 672, 692, 930
SatI GCNGC 1 cut(s) 173
Sau3AI GATC 4 cut(s) 70, 85, 623, 709
Sau96I GGNCC 1 cut(s) 210
ScaI AGTACT 1 cut(s) 35
ScrFI CCNGG 1 cut(s) 405
SduI GDGCHC 1 cut(s) 899
SfaNI GCATC 1 cut(s) 751
SfcI CTRYAG 1 cut(s) 789
SfuI TTCGAA 1 cut(s) 909
SinI GGWCC 1 cut(s) 210
SmiMI CAYNNNNRTG 2 cut(s) 476, 890
SpeI ACTAGT 1 cut(s) 808
Sse9I AATT 2 cut(s) 65, 365
SsiI CCGC 5 cut(s) 122, 213, 320, 458, 753
SspMI CTAG 2 cut(s) 809, 940
StyD4I CCNGG 1 cut(s) 403
StyI CCWWGG 1 cut(s) 828
TaaI ACNGT 2 cut(s) 603, 818
TaiI ACGT 2 cut(s) 442, 684
TaqI TCGA 2 cut(s) 610, 909
TasI AATT 2 cut(s) 65, 365
TatI WGTACW 2 cut(s) 33, 129
TfiI GAWTC 2 cut(s) 518, 557
Tru1I TTAA 5 cut(s) 177, 251, 672, 692, 930
Tru9I TTAA 5 cut(s) 177, 251, 672, 692, 930
TscAI CASTG 3 cut(s) 608, 640, 744
TseFI GTSAC 1 cut(s) 643
TseI GCWGC 1 cut(s) 172
Tsp45I GTSAC 1 cut(s) 643
TspDTI ATGAA 1 cut(s) 237
TspRI CASTG 3 cut(s) 608, 640, 744
VpaK11BI GGWCC 1 cut(s) 210
XceI RCATGY 2 cut(s) 143, 729
XspI CTAG 2 cut(s) 809, 940
ZrmI AGTACT 1 cut(s) 35
Zsp2I ATGCAT 1 cut(s) 731
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.