Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0006259

Physical Location & Seq

Genomic Coordinates Forward (+)

21295188 .. 21299967

Gene Structure 4780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g28310.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGATGCTCTCTATTCGAAACTCTACCACAGGTTCTCCCAATTCAAGACCGAAAAGTTCTCCGAGTTGGATGAAAAGAATAAAGTTCAAGAAGACAAGTTTTTGAACTTTATCCAAGTTGCGGAGGAGTACAGGCAACATGTAGAAAGTGAAAATGAGCGGTTGCATTCGCAGCTTAATGAGCTTAGAAGTGAACTGGCTTCTCTCAGGTCCGCAAAAGATGAACAATTTAACGAGTACCAGAAGCTTTTGATGGAAGAAAACAAGAAAAATAAAGAGCTTTCTGAAGAATTAAGAAAGCTCCAAAAGATGCGACAGGCGGAAACCTTCAGCAGAATGAAGGACAGCAACACAGACAATGATGAATTGTGTATGTCGGGTGGTGATGAAGTATCTGGAGAAGTAGGCAATAGCACAAGGAGAAGAGATACAAATAAACGTAAGAGGCGTTCTGGTTCAGAGACAGGGGACATGGATATGCCTTCTAGGATTCATGAAGATAGTGTATTACGAAGTGAATCTGCAAAGGACTTGCACAAGGAAACTATGCACAGGGAATATCTTGTTATTTCTCGTAAGACTAATGTAAACTTTCAGTCACAGTGCTGTAGAAATCTTGAAGAATCAGGTGGCAGTGTAACTGGCACATCTAACTGCTTGTTCCAAGAGCTTACTGAGCACTTGTGGGGCTTAAAGTTCTCAATTCTTGATCAAACTGAAGAAACATGCATTAAAGCGGTGCATCAATCAAGTGGGTACTCCTTCACTCTGACATGGGTTAACAGAGCTACAGGGAATCAAGAAATATTATACCGTTTTTTATCCTTGGGAACCTTTGAGAGGGTGGCGCCAGAGTGGATGGACGACGAGCTTCTGTTTAGCAAAACCATGTTGCCTATCTTCTTTGAAAGGGTATCCCGTGTTGTTAAGATGTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

313

Amino Acids

36.59

Weight (kDa)

5.76

Isoelectric Point (pI)

62.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7806	PF25091	217 - 310	1.9e-41	Domain of unknown function (DUF7806)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20070 AT3G20070 AT3G20070 AT3G20070
fragaria_vesca	FvH4_3g28310 FvH4_3g28310
malus_domestica	MD03G1170100.v1.1 MD11G1187600.v1.1
prunus_persica	Prupe.4G257000_v2.0.a1 Prupe.4G257000_v2.0.a1 Prupe.4G257000_v2.0.a1 Prupe.4G257000_v2.0.a1 Prupe.4G257000_v2.0.a1 Prupe.4G257000_v2.0.a1
pyrus_communis	pycom03g12650 pycom11g16430
rosa_chinensis	RchiOBHm_Chr5g0051191
rosa_laevigata	RLG00000034761
rosa_multiflora	Rmu_sc0012841.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029170
rosa_rugosa	Rorug05G0266600
rosa_samantha	Rh5AG338700 Rh5BG348700 Rh5CG375700 Rh5DG361600
rosa_wichuraiana	Rw0G023680 Rw5G032000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	847
AccBSI	CCGCTC	1 cut(s)	160
AciI	CCGC	5 cut(s)	122, 160, 213, 320, 737
AcuI	CTGAAG	3 cut(s)	306, 313, 738
AcyI	GRCGYC	1 cut(s)	848
AfaI	GTAC	3 cut(s)	131, 239, 758
AfiI	CCNNNNNNNGG	2 cut(s)	121, 840
AflIII	ACRYGT	1 cut(s)	139
AgsI	TTSAA	5 cut(s)	46, 89, 106, 620, 908
AluBI	AGCT	8 cut(s)	175, 184, 247, 280, 301, 670, 788, 871
AluI	AGCT	8 cut(s)	175, 184, 247, 280, 301, 670, 788, 871
Alw21I	GWGCWC	1 cut(s)	681
Alw26I	GTCTC	1 cut(s)	455
ApeKI	GCWGC	1 cut(s)	172
AspLEI	GCGC	1 cut(s)	850
AspS9I	GGNCC	1 cut(s)	210
AsuHPI	GGTGA	1 cut(s)	395
AsuII	TTCGAA	1 cut(s)	17
AvaII	GGWCC	1 cut(s)	210
BanI	GGYRCC	1 cut(s)	847
BbsI	GAAGAC	1 cut(s)	99
Bbv12I	GWGCWC	1 cut(s)	681
BbvI	GCAGC	1 cut(s)	184
BccI	CCATC	2 cut(s)	247, 853
BciVI	GTATCC	1 cut(s)	925
BclI	TGATCA	1 cut(s)	709
BcoDI	GTCTC	1 cut(s)	455
BfaI	CTAG	2 cut(s)	486, 937
BfmI	CTRYAG	2 cut(s)	607, 789
BfoI	RGCGCY	1 cut(s)	851
BfuI	GTATCC	1 cut(s)	925
BisI	GCNGC	1 cut(s)	173
BlsI	GCNGC	1 cut(s)	174
Bme18I	GGWCC	1 cut(s)	210
BmgT120I	GGNCC	1 cut(s)	210
BmiI	GGNNCC	2 cut(s)	832, 849
BmsI	GCATC	2 cut(s)	300, 751
BpiI	GAAGAC	1 cut(s)	99
BpmI	CTGGAG	1 cut(s)	417
Bpu14I	TTCGAA	1 cut(s)	17
BsaHI	GRCGYC	1 cut(s)	848
BsaJI	CCNNGG	1 cut(s)	825
BsaXI	ACNNNNNCTCC	2 cut(s)	20, 50
Bsc4I	CCNNNNNNNGG	2 cut(s)	121, 840
Bse1I	ACTGG	2 cut(s)	201, 646
BseDI	CCNNGG	1 cut(s)	825
BseGI	GGATG	3 cut(s)	10, 76, 864
BseLI	CCNNNNNNNGG	2 cut(s)	121, 840
BseMII	CTCAG	2 cut(s)	220, 666
BseNI	ACTGG	2 cut(s)	201, 646
BseRI	GAGGAG	1 cut(s)	140
BseXI	GCAGC	1 cut(s)	184
BshNI	GGYRCC	1 cut(s)	847
BsiHKAI	GWGCWC	1 cut(s)	681
BslFI	GGGAC	1 cut(s)	482
BslI	CCNNNNNNNGG	2 cut(s)	121, 840
BsmAI	GTCTC	1 cut(s)	455
BsmFI	GGGAC	1 cut(s)	482
BsmI	GAATGC	1 cut(s)	166
Bsp119I	TTCGAA	1 cut(s)	17
Bsp1286I	GDGCHC	1 cut(s)	681
Bsp143I	GATC	1 cut(s)	709
BspACI	CCGC	5 cut(s)	122, 160, 213, 320, 737
BspCNI	CTCAG	2 cut(s)	219, 667
BspHI	TCATGA	1 cut(s)	493
BspLI	GGNNCC	2 cut(s)	832, 849
BspT104I	TTCGAA	1 cut(s)	17
BspT107I	GGYRCC	1 cut(s)	847
BsrBI	CCGCTC	1 cut(s)	160
BsrI	ACTGG	2 cut(s)	201, 646
BssECI	CCNNGG	1 cut(s)	825
BssMI	GATC	1 cut(s)	709
BssNI	GRCGYC	1 cut(s)	848
BssT1I	CCWWGG	1 cut(s)	825
Bst4CI	ACNGT	2 cut(s)	603, 815
Bst6I	CTCTTC	1 cut(s)	418
BstACI	GRCGYC	1 cut(s)	848
BstBI	TTCGAA	1 cut(s)	17
BstDEI	CTNAG	3 cut(s)	185, 206, 675
BstENI	CCTNNNNNAGG	1 cut(s)	838
BstF5I	GGATG	3 cut(s)	10, 76, 864
BstH2I	RGCGCY	1 cut(s)	851
BstHHI	GCGC	1 cut(s)	850
BstKTI	GATC	1 cut(s)	712
BstMAI	GTCTC	1 cut(s)	455
BstMBI	GATC	1 cut(s)	709
BstMWI	GCNNNNNNNGC	3 cut(s)	172, 181, 676
BstNSI	RCATGY	2 cut(s)	143, 729
BstSFI	CTRYAG	2 cut(s)	607, 789
BstV1I	GCAGC	1 cut(s)	184
BstV2I	GAAGAC	1 cut(s)	99
BsuI	GTATCC	1 cut(s)	925
BtsCI	GGATG	3 cut(s)	10, 76, 864
BtsI	GCAGTG	1 cut(s)	640
BtsIMutI	CAGTG	2 cut(s)	608, 640
CciI	TCATGA	1 cut(s)	493
CfoI	GCGC	1 cut(s)	850
Cfr13I	GGNCC	1 cut(s)	210
Csp6I	GTAC	3 cut(s)	130, 238, 757
CviAII	CATG	6 cut(s)	140, 472, 494, 726, 774, 889
CviQI	GTAC	3 cut(s)	130, 238, 757
DdeI	CTNAG	3 cut(s)	185, 206, 675
DinI	GGCGCC	1 cut(s)	849
DpnI	GATC	1 cut(s)	711
DpnII	GATC	1 cut(s)	709
Eam1104I	CTCTTC	1 cut(s)	418
EarI	CTCTTC	1 cut(s)	418
EciI	GGCGGA	1 cut(s)	335
Eco130I	CCWWGG	1 cut(s)	825
Eco47I	GGWCC	1 cut(s)	210
Eco57I	CTGAAG	3 cut(s)	306, 313, 738
EcoNI	CCTNNNNNAGG	1 cut(s)	838
EcoT14I	CCWWGG	1 cut(s)	825
EcoT22I	ATGCAT	1 cut(s)	731
EgeI	GGCGCC	1 cut(s)	849
EheI	GGCGCC	1 cut(s)	849
ErhI	CCWWGG	1 cut(s)	825
FaeI	CATG	6 cut(s)	143, 475, 497, 729, 777, 892
FaqI	GGGAC	1 cut(s)	482
FatI	CATG	6 cut(s)	139, 471, 493, 725, 773, 888
FbaI	TGATCA	1 cut(s)	709
Fnu4HI	GCNGC	1 cut(s)	173
FokI	GGATG	3 cut(s)	17, 83, 871
Fsp4HI	GCNGC	1 cut(s)	173
FspBI	CTAG	2 cut(s)	486, 937
GlaI	GCGC	1 cut(s)	849
GluI	GCNGC	1 cut(s)	173
GsuI	CTGGAG	1 cut(s)	417
HaeII	RGCGCY	1 cut(s)	851
HhaI	GCGC	1 cut(s)	850
Hin1I	GRCGYC	1 cut(s)	848
Hin1II	CATG	6 cut(s)	143, 475, 497, 729, 777, 892
Hin6I	GCGC	1 cut(s)	848
HinP1I	GCGC	1 cut(s)	848
HincII	GTYRAC	1 cut(s)	781
HindII	GTYRAC	1 cut(s)	781
HindIII	AAGCTT	1 cut(s)	245
HinfI	GANTC	4 cut(s)	490, 518, 623, 796
HpaI	GTTAAC	1 cut(s)	781
HphI	GGTGA	1 cut(s)	395
Hpy166II	GTNNAC	3 cut(s)	194, 589, 781
Hpy188I	TCNGA	4 cut(s)	64, 286, 460, 771
Hpy188III	TCNNGA	7 cut(s)	46, 89, 396, 494, 617, 707, 800
Hpy8I	GTNNAC	3 cut(s)	194, 589, 781
Hpy99I	CGWCG	1 cut(s)	869
HpyAV	CCTTC	4 cut(s)	334, 337, 492, 772
HpyCH4III	ACNGT	2 cut(s)	603, 815
HpyCH4IV	ACGT	1 cut(s)	439
HpyCH4V	TGCA	6 cut(s)	166, 524, 535, 550, 729, 742
HpyF10VI	GCNNNNNNNGC	3 cut(s)	172, 181, 676
HpyF3I	CTNAG	3 cut(s)	185, 206, 675
HpySE526I	ACGT	1 cut(s)	439
Hsp92I	GRCGYC	1 cut(s)	848
Hsp92II	CATG	6 cut(s)	143, 475, 497, 729, 777, 892
HspAI	GCGC	1 cut(s)	848
KasI	GGCGCC	1 cut(s)	847
Ksp22I	TGATCA	1 cut(s)	709
KspAI	GTTAAC	1 cut(s)	781
Kzo9I	GATC	1 cut(s)	709
LmnI	GCTCC	1 cut(s)	306
Lsp1109I	GCAGC	1 cut(s)	184
LweI	GCATC	2 cut(s)	300, 751
MaeI	CTAG	2 cut(s)	486, 937
MaeII	ACGT	1 cut(s)	439
MaeIII	GTNAC	2 cut(s)	597, 637
MalI	GATC	1 cut(s)	711
MbiI	CCGCTC	1 cut(s)	160
MboI	GATC	1 cut(s)	709
MboII	GAAGA	8 cut(s)	104, 269, 299, 435, 509, 632, 731, 892
MhlI	GDGCHC	1 cut(s)	681
MluCI	AATT	5 cut(s)	41, 227, 290, 365, 702
Mly113I	GGCGCC	1 cut(s)	848
MmeI	TCCRAC	1 cut(s)	48
MnlI	CCTC	3 cut(s)	118, 438, 834
Mph1103I	ATGCAT	1 cut(s)	731
MseI	TTAA	7 cut(s)	177, 231, 293, 692, 732, 780, 927
MslI	CAYNNNNRTG	1 cut(s)	476
Mva1269I	GAATGC	1 cut(s)	166
MwoI	GCNNNNNNNGC	3 cut(s)	172, 181, 676
NarI	GGCGCC	1 cut(s)	848
NdeII	GATC	1 cut(s)	709
NlaIII	CATG	6 cut(s)	143, 475, 497, 729, 777, 892
NlaIV	GGNNCC	2 cut(s)	832, 849
NmuCI	GTSAC	1 cut(s)	597
NsiI	ATGCAT	1 cut(s)	731
NspI	RCATGY	2 cut(s)	143, 729
NspV	TTCGAA	1 cut(s)	17
PagI	TCATGA	1 cut(s)	493
PciI	ACATGT	1 cut(s)	139
PcsI	WCGNNNNNNNCGW	1 cut(s)	445
PctI	GAATGC	1 cut(s)	166
PfeI	GAWTC	4 cut(s)	490, 518, 623, 796
PkrI	GCNGC	1 cut(s)	174
PluTI	GGCGCC	1 cut(s)	851
PscI	ACATGT	1 cut(s)	139
PspN4I	GGNNCC	2 cut(s)	832, 849
PspPI	GGNCC	1 cut(s)	210
PsrI	GAACNNNNNNTAC	2 cut(s)	433, 465
RsaI	GTAC	3 cut(s)	131, 239, 758
RsaNI	GTAC	3 cut(s)	130, 238, 757
RseI	CAYNNNNRTG	1 cut(s)	476
SaqAI	TTAA	7 cut(s)	177, 231, 293, 692, 732, 780, 927
SatI	GCNGC	1 cut(s)	173
Sau3AI	GATC	1 cut(s)	709
Sau96I	GGNCC	1 cut(s)	210
SduI	GDGCHC	1 cut(s)	681
SfaNI	GCATC	2 cut(s)	300, 751
SfcI	CTRYAG	2 cut(s)	607, 789
SfoI	GGCGCC	1 cut(s)	849
SfuI	TTCGAA	1 cut(s)	17
SinI	GGWCC	1 cut(s)	210
SmiMI	CAYNNNNRTG	1 cut(s)	476
Sse9I	AATT	5 cut(s)	41, 227, 290, 365, 702
SsiI	CCGC	5 cut(s)	122, 160, 213, 320, 737
SspDI	GGCGCC	1 cut(s)	847
SspI	AATATT	1 cut(s)	807
SspMI	CTAG	2 cut(s)	486, 937
StyI	CCWWGG	1 cut(s)	825
TaaI	ACNGT	2 cut(s)	603, 815
TaiI	ACGT	1 cut(s)	442
TaqI	TCGA	1 cut(s)	17
TaqII	GACCGA	1 cut(s)	65
TasI	AATT	5 cut(s)	41, 227, 290, 365, 702
TatI	WGTACW	1 cut(s)	129
TfiI	GAWTC	4 cut(s)	490, 518, 623, 796
Tru1I	TTAA	7 cut(s)	177, 231, 293, 692, 732, 780, 927
Tru9I	TTAA	7 cut(s)	177, 231, 293, 692, 732, 780, 927
TscAI	CASTG	2 cut(s)	608, 640
TseFI	GTSAC	1 cut(s)	597
TseI	GCWGC	1 cut(s)	172
Tsp45I	GTSAC	1 cut(s)	597
TspDTI	ATGAA	7 cut(s)	87, 237, 353, 378, 402, 482, 510
TspRI	CASTG	2 cut(s)	608, 640
VpaK11BI	GGWCC	1 cut(s)	210
XagI	CCTNNNNNAGG	1 cut(s)	838
XceI	RCATGY	2 cut(s)	143, 729
XspI	CTAG	2 cut(s)	486, 937
Zsp2I	ATGCAT	1 cut(s)	731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.