AT3G20330

Belongs to the ATCase OTCase family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
7089989 .. 7092670
2682 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G20330.1

Sequence Viewer

Length: 1173 bp
ATGTCTATTGCATCATCACTTACTTCAGCCACACTTTGCGGCGCCTCAGTTTTTCCTAAAGCATTAGCCTGCAGCTCTGAGTTCCCTATCAATCTTCCCAGCCCTTTTGAAAGTTCAAAGATTTGTTTGACTTCGTTTCCTGCCTCTAGGGATCTCAAGAAAAATGCTACTTTGAATCTGACTCGAAATGTTGGTCCAGTCAGGTGTCATGCTATGCAAGCTGGGACGAGGGAGTTGAAGAAATTTGAACTTAGTGATGTGATTGAAGGGAAACAGTTTGATAGAGAGATGCTAAGCGCTATATTCGATGTTGCACGCGAAATGGAAAAGATAGAAAAGAGCTCTTCACAAAGTGAAATCCTCAAGGGTTATTTAATGGCTACCCTCTTTTATGAGCCTTCTACCCGTACCAGGCTTTCATTTGAATCTGCTATGAAACGCCTTGGAGGTGAAGTCTTAACTACTGAGAACGCTAGAGAGTTTTCGTCTGCCGCGAAAGGGGAAACACTTGAAGACACAATAAGAACAGTGGAGGGTTATTCAGATATAATTGTGATGCGACATTTTGAAAGCGGTGCTGCAAGAAAAGCTGCAGCTACTGCCAATATACCTGTCATTAATGCAGGTGATGGTCCTGGAGAGCATCCTACTCAGGCTCTATTGGACGTCTATACCATCCAAAGTGAAATTGGAAAATTAGATGGCATCAGTGTAGCCTTAGTTGGAGACCTTGCCAACGGAAGGACTGTGCGGTCTCTTGCATACTTGCTTGCCAAGTTCAAAGACGTGAAGATCTACTTTGTTTCCCCTGAAATTGTGAAAATGAAGGATGATATAAAAGACTATTTGACATCAAGCGGGGTTGAATGGGAAGAAAGTTCAGATTTAATGGAAGTAGCATCCAAGTGTGATGTAGTTTATCAAACACGAATCCAAAGAGAGAGGTTTGGAGAAAGGCTGGACCTTTACGAAGCAGCTCGTGGGAAGTATATCGTAGACAAGGATCTGTTAGGAGTGATGCAGAAAAAAGCTATTATCATGCATCCTTTACCGAGATTGGATGAAATCACCGCAGATGTTGATGCTGATCCAAGAGCTGCCTACTTCAGACAAGCAAAGAACGGTTTGTTCATTAGAATGGCTCTTCTAAAGCTACTGCTTGTCGGTTGGTGA

Protein Analysis

390

Amino Acids

43.17

Weight (kDa)

6.21

Isoelectric Point (pI)

36.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTCace_N PF02729 86 - 227 1.7e-47 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
OTCace PF00185 234 - 385 2.5e-33 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 614
AasI GACNNNNNNGTC 1 cut(s) 751
AatII GACGTC 1 cut(s) 669
Acc36I ACCTGC 1 cut(s) 614
AccB1I GGYRCC 1 cut(s) 41
AccI GTMKAC 1 cut(s) 996
AccII CGCG 2 cut(s) 318, 494
AciI CCGC 6 cut(s) 39, 492, 573, 751, 858, 1071
AclWI GGATC 3 cut(s) 159, 1011, 1082
AcsI RAATTY 1 cut(s) 242
AcuI CTGAAG 2 cut(s) 9, 1090
AcyI GRCGYC 2 cut(s) 42, 666
AdeI CACNNNGTG 1 cut(s) 353
AfaI GTAC 1 cut(s) 409
AfeI AGCGCT 1 cut(s) 298
AfiI CCNNNNNNNGG 3 cut(s) 411, 498, 741
AjiI CACGTC 1 cut(s) 787
AjnI CCWGG 2 cut(s) 410, 634
AluBI AGCT 9 cut(s) 75, 221, 342, 590, 596, 977, 1031, 1097, 1153
AluI AGCT 9 cut(s) 75, 221, 342, 590, 596, 977, 1031, 1097, 1153
Alw21I GWGCWC 1 cut(s) 344
Alw26I GTCTC 2 cut(s) 720, 759
AlwI GGATC 3 cut(s) 159, 1011, 1082
AlwNI CAGNNNCTG 1 cut(s) 599
Aor51HI AGCGCT 1 cut(s) 298
ApeKI GCWGC 6 cut(s) 72, 578, 590, 593, 974, 1097
ApoI RAATTY 1 cut(s) 242
ArsI GACNNNNNNTTYG 2 cut(s) 178, 210
AseI ATTAAT 1 cut(s) 618
AspLEI GCGC 2 cut(s) 44, 299
AspS9I GGNCC 3 cut(s) 194, 632, 961
AsuHPI GGTGA 3 cut(s) 461, 638, 1060
AvaII GGWCC 3 cut(s) 194, 632, 961
BanI GGYRCC 1 cut(s) 41
BanII GRGCYC 1 cut(s) 344
BauI CACGAG 1 cut(s) 978
BbsI GAAGAC 1 cut(s) 519
Bbv12I GWGCWC 1 cut(s) 344
BbvI GCAGC 6 cut(s) 84, 565, 577, 605, 986, 1084
BccI CCATC 3 cut(s) 623, 683, 695
BciT130I CCWGG 2 cut(s) 412, 636
BcoDI GTCTC 2 cut(s) 720, 759
BfaI CTAG 2 cut(s) 147, 474
BfmI CTRYAG 2 cut(s) 70, 591
BfoI RGCGCY 2 cut(s) 45, 300
BfuAI ACCTGC 1 cut(s) 614
BglII AGATCT 1 cut(s) 792
BisI GCNGC 8 cut(s) 40, 73, 492, 579, 591, 594, 975, 1098
BlpI GCTNAGC 1 cut(s) 293
BlsI GCNGC 8 cut(s) 41, 74, 493, 580, 592, 595, 976, 1099
Bme1390I CCNGG 2 cut(s) 412, 636
Bme18I GGWCC 3 cut(s) 194, 632, 961
BmgBI CACGTC 1 cut(s) 787
BmgT120I GGNCC 3 cut(s) 194, 632, 961
BmiI GGNNCC 1 cut(s) 43
BmrFI CCNGG 2 cut(s) 412, 636
BmsI GCATC 9 cut(s) 20, 279, 546, 652, 714, 908, 1008, 1051, 1072
BpiI GAAGAC 1 cut(s) 519
BpmI CTGGAG 1 cut(s) 657
Bpu1102I GCTNAGC 1 cut(s) 293
BpuEI CTTGAG 2 cut(s) 140, 347
BsaBI GATNNNNATC 1 cut(s) 1086
BsaHI GRCGYC 2 cut(s) 42, 666
BsaI GGTCTC 2 cut(s) 720, 759
BsaJI CCNNGG 1 cut(s) 442
BsaXI ACNNNNNCTCC 2 cut(s) 438, 468
Bsc4I CCNNNNNNNGG 3 cut(s) 411, 498, 741
Bse1I ACTGG 1 cut(s) 197
Bse8I GATNNNNATC 1 cut(s) 1086
BseBI CCWGG 2 cut(s) 412, 636
BseDI CCNNGG 1 cut(s) 442
BseGI GGATG 6 cut(s) 643, 675, 835, 899, 1042, 1066
BseJI GATNNNNATC 1 cut(s) 1086
BseLI CCNNNNNNNGG 3 cut(s) 411, 498, 741
BseMII CTCAG 4 cut(s) 60, 69, 456, 665
BseNI ACTGG 1 cut(s) 197
BseXI GCAGC 6 cut(s) 84, 565, 577, 605, 986, 1084
BseYI CCCAGC 2 cut(s) 98, 221
Bsh1236I CGCG 2 cut(s) 318, 494
BshNI GGYRCC 1 cut(s) 41
BsiHKAI GWGCWC 1 cut(s) 344
BslFI GGGAC 1 cut(s) 238
BslI CCNNNNNNNGG 3 cut(s) 411, 498, 741
BsmAI GTCTC 2 cut(s) 720, 759
BsmFI GGGAC 1 cut(s) 238
Bso31I GGTCTC 2 cut(s) 720, 759
Bsp1286I GDGCHC 1 cut(s) 344
Bsp143I GATC 4 cut(s) 151, 792, 1003, 1087
Bsp1720I GCTNAGC 1 cut(s) 293
BspACI CCGC 6 cut(s) 39, 492, 573, 751, 858, 1071
BspCNI CTCAG 4 cut(s) 59, 70, 457, 664
BspFNI CGCG 2 cut(s) 318, 494
BspLI GGNNCC 1 cut(s) 43
BspMAI CTGCAG 2 cut(s) 74, 595
BspMI ACCTGC 1 cut(s) 614
BspPI GGATC 3 cut(s) 159, 1011, 1082
BspQI GCTCTTC 2 cut(s) 349, 1149
BspT107I GGYRCC 1 cut(s) 41
BspTNI GGTCTC 2 cut(s) 720, 759
BsrI ACTGG 1 cut(s) 197
BssECI CCNNGG 1 cut(s) 442
BssMI GATC 4 cut(s) 151, 792, 1003, 1087
BssNI GRCGYC 2 cut(s) 42, 666
BssSI CACGAG 1 cut(s) 978
BssT1I CCWWGG 1 cut(s) 442
Bst2BI CACGAG 1 cut(s) 978
Bst2UI CCWGG 2 cut(s) 412, 636
Bst4CI ACNGT 4 cut(s) 276, 529, 748, 1124
Bst6I CTCTTC 2 cut(s) 349, 1149
BstACI GRCGYC 2 cut(s) 42, 666
BstAPI GCANNNNNTGC 1 cut(s) 599
BstC8I GCNNGC 4 cut(s) 70, 219, 316, 771
BstDEI CTNAG 7 cut(s) 46, 78, 251, 293, 465, 651, 718
BstF5I GGATG 6 cut(s) 643, 675, 835, 899, 1042, 1066
BstFNI CGCG 2 cut(s) 318, 494
BstH2I RGCGCY 2 cut(s) 45, 300
BstHHI GCGC 2 cut(s) 44, 299
BstKTI GATC 4 cut(s) 154, 795, 1006, 1090
BstMAI GTCTC 2 cut(s) 720, 759
BstMBI GATC 4 cut(s) 151, 792, 1003, 1087
BstMWI GCNNNNNNNGC 3 cut(s) 218, 587, 599
BstNI CCWGG 2 cut(s) 412, 636
BstSCI CCNGG 2 cut(s) 410, 634
BstSFI CTRYAG 2 cut(s) 70, 591
BstUI CGCG 2 cut(s) 318, 494
BstV1I GCAGC 6 cut(s) 84, 565, 577, 605, 986, 1084
BstV2I GAAGAC 1 cut(s) 519
BstX2I RGATCY 3 cut(s) 151, 792, 1003
BstYI RGATCY 3 cut(s) 151, 792, 1003
BtrI CACGTC 1 cut(s) 787
BtsCI GGATG 6 cut(s) 643, 675, 835, 899, 1042, 1066
BtsIMutI CAGTG 2 cut(s) 534, 715
BveI ACCTGC 1 cut(s) 614
Cac8I GCNNGC 4 cut(s) 70, 219, 316, 771
CaiI CAGNNNCTG 1 cut(s) 599
CfoI GCGC 2 cut(s) 44, 299
Cfr13I GGNCC 3 cut(s) 194, 632, 961
Csp6I GTAC 1 cut(s) 408
CviAII CATG 2 cut(s) 209, 1039
CviQI GTAC 1 cut(s) 408
DdeI CTNAG 7 cut(s) 46, 78, 251, 293, 465, 651, 718
DinI GGCGCC 1 cut(s) 43
DpnI GATC 4 cut(s) 153, 794, 1005, 1089
DpnII GATC 4 cut(s) 151, 792, 1003, 1087
DraIII CACNNNGTG 1 cut(s) 353
DrdI GACNNNNNNGTC 1 cut(s) 751
DseDI GACNNNNNNGTC 1 cut(s) 751
Eam1104I CTCTTC 2 cut(s) 349, 1149
EarI CTCTTC 2 cut(s) 349, 1149
Ecl136II GAGCTC 1 cut(s) 342
Eco130I CCWWGG 1 cut(s) 442
Eco24I GRGCYC 1 cut(s) 344
Eco31I GGTCTC 2 cut(s) 720, 759
Eco47I GGWCC 3 cut(s) 194, 632, 961
Eco47III AGCGCT 1 cut(s) 298
Eco53kI GAGCTC 1 cut(s) 342
Eco57I CTGAAG 2 cut(s) 9, 1090
EcoICRI GAGCTC 1 cut(s) 342
EcoRII CCWGG 2 cut(s) 410, 634
EcoT14I CCWWGG 1 cut(s) 442
EcoT22I ATGCAT 1 cut(s) 1044
EcoT38I GRGCYC 1 cut(s) 344
EgeI GGCGCC 1 cut(s) 43
EheI GGCGCC 1 cut(s) 43
ErhI CCWWGG 1 cut(s) 442
FaeI CATG 2 cut(s) 212, 1042
FalI AAGNNNNNCTT 2 cut(s) 782, 814
FaqI GGGAC 1 cut(s) 238
FatI CATG 2 cut(s) 208, 1038
FauI CCCGC 1 cut(s) 851
FblI GTMKAC 1 cut(s) 996
Fnu4HI GCNGC 8 cut(s) 40, 73, 492, 579, 591, 594, 975, 1098
FokI GGATG 6 cut(s) 630, 662, 842, 886, 1029, 1073
FriOI GRGCYC 1 cut(s) 344
Fsp4HI GCNGC 8 cut(s) 40, 73, 492, 579, 591, 594, 975, 1098
FspBI CTAG 2 cut(s) 147, 474
GlaI GCGC 2 cut(s) 43, 298
GluI GCNGC 8 cut(s) 40, 73, 492, 579, 591, 594, 975, 1098
GsaI CCCAGC 2 cut(s) 102, 225
GsuI CTGGAG 1 cut(s) 657
HaeII RGCGCY 2 cut(s) 45, 300
HhaI GCGC 2 cut(s) 44, 299
Hin1I GRCGYC 2 cut(s) 42, 666
Hin1II CATG 2 cut(s) 212, 1042
Hin6I GCGC 2 cut(s) 42, 297
HinP1I GCGC 2 cut(s) 42, 297
HinfI GANTC 4 cut(s) 175, 181, 425, 930
HphI GGTGA 3 cut(s) 461, 638, 1060
Hpy166II GTNNAC 1 cut(s) 997
Hpy188I TCNGA 5 cut(s) 79, 180, 544, 883, 1109
Hpy188III TCNNGA 1 cut(s) 157
Hpy8I GTNNAC 1 cut(s) 997
HpyAV CCTTC 4 cut(s) 260, 408, 735, 820
HpyCH4III ACNGT 4 cut(s) 276, 529, 748, 1124
HpyCH4IV ACGT 2 cut(s) 666, 786
HpyF10VI GCNNNNNNNGC 3 cut(s) 218, 587, 599
HpyF3I CTNAG 7 cut(s) 46, 78, 251, 293, 465, 651, 718
HpySE526I ACGT 2 cut(s) 666, 786
Hsp92I GRCGYC 2 cut(s) 42, 666
Hsp92II CATG 2 cut(s) 212, 1042
HspAI GCGC 2 cut(s) 42, 297
KasI GGCGCC 1 cut(s) 41
Kzo9I GATC 4 cut(s) 151, 792, 1003, 1087
LguI GCTCTTC 2 cut(s) 349, 1149
Lsp1109I GCAGC 6 cut(s) 84, 565, 577, 605, 986, 1084
LweI GCATC 9 cut(s) 20, 279, 546, 652, 714, 908, 1008, 1051, 1072
MaeI CTAG 2 cut(s) 147, 474
MaeII ACGT 2 cut(s) 666, 786
MalI GATC 4 cut(s) 153, 794, 1005, 1089
MboI GATC 4 cut(s) 151, 792, 1003, 1087
MboII GAAGA 7 cut(s) 86, 250, 336, 524, 802, 884, 1136
MflI RGATCY 3 cut(s) 151, 792, 1003
MhlI GDGCHC 1 cut(s) 344
MluCI AATT 5 cut(s) 242, 549, 687, 695, 813
Mly113I GGCGCC 1 cut(s) 42
MlyI GAGTC 1 cut(s) 175
MmeI TCCRAC 1 cut(s) 703
MnlI CCTC 8 cut(s) 55, 154, 222, 371, 395, 440, 526, 936
Mph1103I ATGCAT 1 cut(s) 1044
MseI TTAA 4 cut(s) 374, 458, 618, 887
MslI CAYNNNNRTG 2 cut(s) 904, 1136
MspR9I CCNGG 2 cut(s) 412, 636
MvaI CCWGG 2 cut(s) 412, 636
MvnI CGCG 2 cut(s) 318, 494
MwoI GCNNNNNNNGC 3 cut(s) 218, 587, 599
NarI GGCGCC 1 cut(s) 42
NdeII GATC 4 cut(s) 151, 792, 1003, 1087
NlaIII CATG 2 cut(s) 212, 1042
NlaIV GGNNCC 1 cut(s) 43
NsiI ATGCAT 1 cut(s) 1044
PaqCI CACCTGC 1 cut(s) 614
PciSI GCTCTTC 2 cut(s) 349, 1149
PcsI WCGNNNNNNNCGW 1 cut(s) 491
PfeI GAWTC 3 cut(s) 175, 425, 930
PfoI TCCNGGA 1 cut(s) 634
PkrI GCNGC 8 cut(s) 41, 74, 493, 580, 592, 595, 976, 1099
PleI GAGTC 1 cut(s) 175
PluTI GGCGCC 1 cut(s) 45
PpsI GAGTC 1 cut(s) 175
PshBI ATTAAT 1 cut(s) 618
Psp124BI GAGCTC 1 cut(s) 344
Psp6I CCWGG 2 cut(s) 410, 634
PspFI CCCAGC 2 cut(s) 98, 221
PspGI CCWGG 2 cut(s) 410, 634
PspN4I GGNNCC 1 cut(s) 43
PspPI GGNCC 3 cut(s) 194, 632, 961
PstI CTGCAG 2 cut(s) 74, 595
PstNI CAGNNNCTG 1 cut(s) 599
PsuI RGATCY 3 cut(s) 151, 792, 1003
RsaI GTAC 1 cut(s) 409
RsaNI GTAC 1 cut(s) 408
RseI CAYNNNNRTG 2 cut(s) 904, 1136
SacI GAGCTC 1 cut(s) 344
SapI GCTCTTC 2 cut(s) 349, 1149
SaqAI TTAA 4 cut(s) 374, 458, 618, 887
SatI GCNGC 8 cut(s) 40, 73, 492, 579, 591, 594, 975, 1098
Sau3AI GATC 4 cut(s) 151, 792, 1003, 1087
Sau96I GGNCC 3 cut(s) 194, 632, 961
SchI GAGTC 1 cut(s) 175
ScrFI CCNGG 2 cut(s) 412, 636
SduI GDGCHC 1 cut(s) 344
SfaNI GCATC 9 cut(s) 20, 279, 546, 652, 714, 908, 1008, 1051, 1072
SfcI CTRYAG 2 cut(s) 70, 591
SfoI GGCGCC 1 cut(s) 43
SinI GGWCC 3 cut(s) 194, 632, 961
SmiMI CAYNNNNRTG 2 cut(s) 904, 1136
SmlI CTYRAG 2 cut(s) 155, 362
SmoI CTYRAG 2 cut(s) 155, 362
Sse9I AATT 5 cut(s) 242, 549, 687, 695, 813
SsiI CCGC 6 cut(s) 39, 492, 573, 751, 858, 1071
SspDI GGCGCC 1 cut(s) 41
SspMI CTAG 2 cut(s) 147, 474
SstI GAGCTC 1 cut(s) 344
StyD4I CCNGG 2 cut(s) 410, 634
StyI CCWWGG 1 cut(s) 442
TaaI ACNGT 4 cut(s) 276, 529, 748, 1124
TaiI ACGT 2 cut(s) 669, 789
TaqI TCGA 2 cut(s) 184, 306
TasI AATT 5 cut(s) 242, 549, 687, 695, 813
TauI GCSGC 2 cut(s) 42, 494
TfiI GAWTC 3 cut(s) 175, 425, 930
Tru1I TTAA 4 cut(s) 374, 458, 618, 887
Tru9I TTAA 4 cut(s) 374, 458, 618, 887
TscAI CASTG 2 cut(s) 534, 715
TseI GCWGC 6 cut(s) 72, 578, 590, 593, 974, 1097
TspDTI ATGAA 5 cut(s) 408, 449, 839, 1077, 1120
TspGWI ACGGA 1 cut(s) 753
TspRI CASTG 2 cut(s) 534, 715
VpaK11BI GGWCC 3 cut(s) 194, 632, 961
VspI ATTAAT 1 cut(s) 618
XapI RAATTY 1 cut(s) 242
XcmI CCANNNNNNNNNTGG 1 cut(s) 686
XmiI GTMKAC 1 cut(s) 996
XspI CTAG 2 cut(s) 147, 474
ZraI GACGTC 1 cut(s) 667
Zsp2I ATGCAT 1 cut(s) 1044
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.