Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003920

Physical Location & Seq

Genomic Coordinates Forward (+)

11033144 .. 11039050

Gene Structure 5907 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g09330.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGCTGCTTCGTCATCATTGTTTTCATTTTCATCTCAAGGAATTATATCATTTCACAAAACAACGACGTGCTATAGAGACTTCAGGAGCAGTTATCGAGATGTTACCTGTAAAGAATCTGGTTACTTCGACTCCACGTGCCTTACACAGTCAAGGTTGTTACCCAATGAGGCATTATCAAAATGTGAACAGGCTGCAAAATTCGCACAGAAGAATGACATTCTGTACCATGCATTGAAAGTTGAAAATTTATATGCCTTTTCGACAGGGAAGAAGTTTCAACTGGATGATGTGATTGAAGCTCAACAGTTTGATAGAGATATTCTCAATGCTATTTTTGGAGTTGCACGTGGTATGGAGTATATTGAGAAGAATTCACAGGGAAGCCAAATTCTTAAGGGTTATCTTATGGCTACTCTCTTTTATGAACCCTCCACTAGAACTAGACTTTCATTCGAGTCAGCCATGAAACGGTTGGGTGGCGAAGTTTTGACTACTGAAAATGCTAGGGAGTTTTCTTCAGCAGCTAAAGGAGAAACTCTTGAAGATTCTATAAGAACTGTTGAAGGTTACTCGGATATAATTGTAATGCGTCACTTTGAAAGTGGTGCAGCGAAAAGAGCTGCAGTAACTGCTGGCATTCCTATAATTAATGCAGGAGATGGTGCTGGACAACATGCAACACAGGCTCTTTTAGATGTGTTCACTATTGAAAGAGAGATAGGAAAGCTGGATGGAATTAAAGTTGCACTTGTTGGTGATCTTGCTAATGGAAGGACAGTGCGTTCATTGGCATACTTGCTTGCAAAGTATAATGATGTGAAGATCTATTTCGTATCTCCTGGTGTGGTTAAAATGAAGAATGATATAAAAGATTATTTGACATCAAAGAATGTTGAGTGGGAAGAAAGTGCTGATTTGATGGAAGTTGCTTCCGAGTGTGATGTTCTTTATCAAACTCGTGTTCAGCGTGAACGGTTTGGAGAAAGGATCGACCTCTATGAAGCCACTCGAGGCAAGTACACTGTGGACCGTCATGTTTTAGATGTGATGCAGAAGCATGCTGTGGTCATGCACCCTCTGCCTAGACTTGATGAGGTAAGCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004070 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006220 GO:0006221 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009165 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009267 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016740 GO:0016741 GO:0016743 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034641 GO:0034654 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046390 GO:0046483 GO:0050896 GO:0051716 GO:0055086 GO:0071496 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00240 ko00250 ko01100 map00240 map00250 map01100

Pfam Domains

Protein Families

OTCace OTCace_N

Protein Analysis

370

Amino Acids

41.35

Weight (kDa)

6.05

Isoelectric Point (pI)

32.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OTCace_N	PF02729	97 - 182	7.8e-19	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
OTCace_N	PF02729	185 - 216	8.9e-07	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
OTCace	PF00185	223 - 374	1.8e-31	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20330 AT3G20330
fragaria_vesca	FvH4_4g09330 FvH4_4g09330 FvH4_4g09330 FvH4_4g09330 FvH4_4g09330 FvH4_4g09330 FvH4_7g16631 FvH4_7g16631
malus_domestica	MD15G1397500.v1.1
prunus_persica	Prupe.4G221200_v2.0.a1
pyrus_communis	pycom15g35730
rosa_chinensis	RchiOBHm_Chr4g0402721 RchiOBHm_Chr6g0264841
rosa_laevigata	RLG00000009051 RLG00000014232
rosa_multiflora	Rmu_sc0000546.1_g000042 Rmu_sc0002451.1_g000002
rosa_roxburghii	Rroxscaffold_175G00432030 Rroxscaffold_5G00347480 Rroxscaffold_7G00203190
rosa_rugosa	Rorug04G0038000 Rorug06G0014400
rosa_samantha	Rh4AG115600 Rh4BG108100 Rh4CG122500 Rh4DG108100 Rh6AG134700 Rh6BG132300 Rh6CG130900 Rh6DG117900
rosa_wichuraiana	Rw4G009240 Rw6G011660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	998
AcsI	RAATTY	4 cut(s)	200, 247, 373, 390
AcuI	CTGAAG	2 cut(s)	67, 504
AcvI	CACGTG	2 cut(s)	138, 350
AfaI	GTAC	2 cut(s)	227, 1022
AfiI	CCNNNNNNNGG	1 cut(s)	471
AflII	CTTAAG	1 cut(s)	395
AgsI	TTSAA	8 cut(s)	238, 245, 281, 299, 545, 566, 602, 713
AjiI	CACGTC	1 cut(s)	69
AjnI	CCWGG	1 cut(s)	841
AloI	GAACNNNNNNTCC	2 cut(s)	769, 801
AluBI	AGCT	4 cut(s)	302, 527, 623, 730
AluI	AGCT	4 cut(s)	302, 527, 623, 730
Alw26I	GTCTC	1 cut(s)	72
AlwI	GGATC	1 cut(s)	998
AlwNI	CAGNNNCTG	1 cut(s)	632
Ama87I	CYCGRG	1 cut(s)	1011
ApeKI	GCWGC	5 cut(s)	5, 194, 524, 611, 623
ApoI	RAATTY	4 cut(s)	200, 247, 373, 390
AseI	ATTAAT	1 cut(s)	651
AspS9I	GGNCC	1 cut(s)	1030
AsuHPI	GGTGA	1 cut(s)	770
AvaI	CYCGRG	1 cut(s)	1011
AvaII	GGWCC	1 cut(s)	1030
BauI	CACGAG	1 cut(s)	960
BbrPI	CACGTG	2 cut(s)	138, 350
BbvI	GCAGC	4 cut(s)	181, 536, 610, 623
BccI	CCATC	3 cut(s)	656, 728, 916
BciT130I	CCWGG	1 cut(s)	843
BcoDI	GTCTC	1 cut(s)	72
BfaI	CTAG	4 cut(s)	438, 444, 507, 1086
BfmI	CTRYAG	2 cut(s)	73, 624
BfrI	CTTAAG	1 cut(s)	395
BglII	AGATCT	1 cut(s)	825
BisI	GCNGC	5 cut(s)	6, 195, 525, 612, 624
BlsI	GCNGC	5 cut(s)	7, 196, 526, 613, 625
Bme1390I	CCNGG	1 cut(s)	843
Bme18I	GGWCC	1 cut(s)	1030
BmeT110I	CYCGRG	1 cut(s)	1011
BmgBI	CACGTC	1 cut(s)	69
BmgT120I	GGNCC	1 cut(s)	1030
BmrFI	CCNGG	1 cut(s)	843
BmsI	GCATC	1 cut(s)	1041
BplI	GAGNNNNNCTC	2 cut(s)	309, 341
BpuEI	CTTGAG	1 cut(s)	21
BsaAI	YACGTR	2 cut(s)	138, 350
BsaXI	ACNNNNNCTCC	2 cut(s)	116, 146
Bsc4I	CCNNNNNNNGG	1 cut(s)	471
Bse1I	ACTGG	1 cut(s)	288
BseBI	CCWGG	1 cut(s)	843
BseGI	GGATG	2 cut(s)	292, 739
BseLI	CCNNNNNNNGG	1 cut(s)	471
BseNI	ACTGG	1 cut(s)	288
BseXI	GCAGC	4 cut(s)	181, 536, 610, 623
BsgI	GTGCAG	1 cut(s)	630
BsiHKCI	CYCGRG	1 cut(s)	1011
BslI	CCNNNNNNNGG	1 cut(s)	471
BsmAI	GTCTC	1 cut(s)	72
BsmI	GAATGC	1 cut(s)	639
BsoBI	CYCGRG	1 cut(s)	1011
Bsp143I	GATC	3 cut(s)	760, 825, 990
BspMAI	CTGCAG	1 cut(s)	628
BspPI	GGATC	1 cut(s)	998
BspTI	CTTAAG	1 cut(s)	395
BsrI	ACTGG	1 cut(s)	288
BssMI	GATC	3 cut(s)	760, 825, 990
BssSI	CACGAG	1 cut(s)	960
Bst2BI	CACGAG	1 cut(s)	960
Bst2UI	CCWGG	1 cut(s)	843
Bst4CI	ACNGT	8 cut(s)	150, 309, 474, 562, 781, 978, 1027, 1034
BstAFI	CTTAAG	1 cut(s)	395
BstAPI	GCANNNNNTGC	2 cut(s)	632, 1081
BstBAI	YACGTR	2 cut(s)	138, 350
BstC8I	GCNNGC	3 cut(s)	637, 804, 1062
BstF5I	GGATG	2 cut(s)	292, 739
BstKTI	GATC	3 cut(s)	763, 828, 993
BstMAI	GTCTC	1 cut(s)	72
BstMBI	GATC	3 cut(s)	760, 825, 990
BstMWI	GCNNNNNNNGC	5 cut(s)	203, 620, 632, 686, 1081
BstNI	CCWGG	1 cut(s)	843
BstNSI	RCATGY	2 cut(s)	680, 1064
BstSCI	CCNGG	1 cut(s)	841
BstSFI	CTRYAG	2 cut(s)	73, 624
BstV1I	GCAGC	4 cut(s)	181, 536, 610, 623
BstX2I	RGATCY	1 cut(s)	825
BstYI	RGATCY	1 cut(s)	825
BtrI	CACGTC	1 cut(s)	69
BtsCI	GGATG	2 cut(s)	292, 739
BtsIMutI	CAGTG	2 cut(s)	786, 1023
Cac8I	GCNNGC	3 cut(s)	637, 804, 1062
CaiI	CAGNNNCTG	1 cut(s)	632
Cfr13I	GGNCC	1 cut(s)	1030
CseI	GACGC	1 cut(s)	581
Csp6I	GTAC	2 cut(s)	226, 1021
CviAII	CATG	6 cut(s)	230, 466, 677, 1037, 1061, 1072
CviQI	GTAC	2 cut(s)	226, 1021
DpnI	GATC	3 cut(s)	762, 827, 992
DpnII	GATC	3 cut(s)	760, 825, 990
Eco47I	GGWCC	1 cut(s)	1030
Eco57I	CTGAAG	2 cut(s)	67, 504
Eco72I	CACGTG	2 cut(s)	138, 350
Eco88I	CYCGRG	1 cut(s)	1011
EcoRI	GAATTC	1 cut(s)	373
EcoRII	CCWGG	1 cut(s)	841
EcoT22I	ATGCAT	1 cut(s)	235
FaeI	CATG	6 cut(s)	233, 469, 680, 1040, 1064, 1075
FalI	AAGNNNNNCTT	2 cut(s)	735, 767
FatI	CATG	6 cut(s)	229, 465, 676, 1036, 1060, 1071
Fnu4HI	GCNGC	5 cut(s)	6, 195, 525, 612, 624
FokI	GGATG	2 cut(s)	299, 746
Fsp4HI	GCNGC	5 cut(s)	6, 195, 525, 612, 624
FspBI	CTAG	4 cut(s)	438, 444, 507, 1086
GluI	GCNGC	5 cut(s)	6, 195, 525, 612, 624
HgaI	GACGC	1 cut(s)	581
Hin1II	CATG	6 cut(s)	233, 469, 680, 1040, 1064, 1075
HinfI	GANTC	4 cut(s)	116, 131, 458, 548
HphI	GGTGA	1 cut(s)	770
Hpy166II	GTNNAC	5 cut(s)	188, 705, 974, 1023, 1030
Hpy188I	TCNGA	2 cut(s)	577, 937
Hpy188III	TCNNGA	3 cut(s)	85, 98, 542
Hpy8I	GTNNAC	5 cut(s)	188, 705, 974, 1023, 1030
Hpy99I	CGWCG	1 cut(s)	70
HpyAV	CCTTC	2 cut(s)	560, 768
HpyCH4III	ACNGT	8 cut(s)	150, 309, 474, 562, 781, 978, 1027, 1034
HpyCH4IV	ACGT	3 cut(s)	68, 137, 349
HpyF10VI	GCNNNNNNNGC	5 cut(s)	203, 620, 632, 686, 1081
HpySE526I	ACGT	3 cut(s)	68, 137, 349
Hsp92II	CATG	6 cut(s)	233, 469, 680, 1040, 1064, 1075
Kzo9I	GATC	3 cut(s)	760, 825, 990
LmnI	GCTCC	1 cut(s)	87
Lsp1109I	GCAGC	4 cut(s)	181, 536, 610, 623
LweI	GCATC	1 cut(s)	1041
MaeI	CTAG	4 cut(s)	438, 444, 507, 1086
MaeII	ACGT	3 cut(s)	68, 137, 349
MaeIII	GTNAC	6 cut(s)	103, 122, 159, 569, 593, 628
MalI	GATC	3 cut(s)	762, 827, 992
MboI	GATC	3 cut(s)	760, 825, 990
MboII	GAAGA	8 cut(s)	223, 283, 382, 510, 557, 835, 871, 917
MflI	RGATCY	1 cut(s)	825
MluCI	AATT	9 cut(s)	42, 200, 247, 373, 390, 582, 648, 738, 1105
MlyI	GAGTC	2 cut(s)	125, 467
MnlI	CCTC	6 cut(s)	163, 442, 1007, 1007, 1089, 1090
Mph1103I	ATGCAT	1 cut(s)	235
MseI	TTAA	5 cut(s)	396, 651, 741, 852, 1108
MspCI	CTTAAG	1 cut(s)	395
MspR9I	CCNGG	1 cut(s)	843
Mva1269I	GAATGC	1 cut(s)	639
MvaI	CCWGG	1 cut(s)	843
MwoI	GCNNNNNNNGC	5 cut(s)	203, 620, 632, 686, 1081
NdeII	GATC	3 cut(s)	760, 825, 990
NlaIII	CATG	6 cut(s)	233, 469, 680, 1040, 1064, 1075
NmuCI	GTSAC	1 cut(s)	593
NsiI	ATGCAT	1 cut(s)	235
NspI	RCATGY	2 cut(s)	680, 1064
PaeI	GCATGC	1 cut(s)	1064
PaeR7I	CTCGAG	1 cut(s)	1011
PcsI	WCGNNNNNNNCGW	1 cut(s)	967
PctI	GAATGC	1 cut(s)	639
PfeI	GAWTC	2 cut(s)	116, 548
PkrI	GCNGC	5 cut(s)	7, 196, 526, 613, 625
PleI	GAGTC	2 cut(s)	125, 466
PmaCI	CACGTG	2 cut(s)	138, 350
PmlI	CACGTG	2 cut(s)	138, 350
PpsI	GAGTC	2 cut(s)	125, 466
Ppu21I	YACGTR	2 cut(s)	138, 350
PshBI	ATTAAT	1 cut(s)	651
Psp6I	CCWGG	1 cut(s)	841
PspCI	CACGTG	2 cut(s)	138, 350
PspGI	CCWGG	1 cut(s)	841
PspPI	GGNCC	1 cut(s)	1030
PspXI	VCTCGAGB	1 cut(s)	1011
PstI	CTGCAG	1 cut(s)	628
PstNI	CAGNNNCTG	1 cut(s)	632
PsuI	RGATCY	1 cut(s)	825
RsaI	GTAC	2 cut(s)	227, 1022
RsaNI	GTAC	2 cut(s)	226, 1021
SaqAI	TTAA	5 cut(s)	396, 651, 741, 852, 1108
SatI	GCNGC	5 cut(s)	6, 195, 525, 612, 624
Sau3AI	GATC	3 cut(s)	760, 825, 990
Sau96I	GGNCC	1 cut(s)	1030
SchI	GAGTC	2 cut(s)	125, 467
ScrFI	CCNGG	1 cut(s)	843
SfaNI	GCATC	1 cut(s)	1041
SfcI	CTRYAG	2 cut(s)	73, 624
Sfr274I	CTCGAG	1 cut(s)	1011
SinI	GGWCC	1 cut(s)	1030
SlaI	CTCGAG	1 cut(s)	1011
SmlI	CTYRAG	3 cut(s)	36, 395, 1011
SmoI	CTYRAG	3 cut(s)	36, 395, 1011
SphI	GCATGC	1 cut(s)	1064
Sse9I	AATT	9 cut(s)	42, 200, 247, 373, 390, 582, 648, 738, 1105
SspMI	CTAG	4 cut(s)	438, 444, 507, 1086
StyD4I	CCNGG	1 cut(s)	841
TaaI	ACNGT	8 cut(s)	150, 309, 474, 562, 781, 978, 1027, 1034
TaiI	ACGT	3 cut(s)	71, 140, 352
TaqI	TCGA	6 cut(s)	97, 129, 263, 456, 993, 1012
TasI	AATT	9 cut(s)	42, 200, 247, 373, 390, 582, 648, 738, 1105
TatI	WGTACW	1 cut(s)	1020
TfiI	GAWTC	2 cut(s)	116, 548
Tru1I	TTAA	5 cut(s)	396, 651, 741, 852, 1108
Tru9I	TTAA	5 cut(s)	396, 651, 741, 852, 1108
TscAI	CASTG	2 cut(s)	786, 1030
TseFI	GTSAC	1 cut(s)	593
TseI	GCWGC	5 cut(s)	5, 194, 524, 611, 623
Tsp45I	GTSAC	1 cut(s)	593
TspDTI	ATGAA	8 cut(s)	15, 21, 441, 441, 482, 777, 872, 1017
TspRI	CASTG	2 cut(s)	786, 1030
Vha464I	CTTAAG	1 cut(s)	395
VpaK11BI	GGWCC	1 cut(s)	1030
VspI	ATTAAT	1 cut(s)	651
XapI	RAATTY	4 cut(s)	200, 247, 373, 390
XceI	RCATGY	2 cut(s)	680, 1064
XcmI	CCANNNNNNNNNTGG	1 cut(s)	472
XhoI	CTCGAG	1 cut(s)	1011
XspI	CTAG	4 cut(s)	438, 444, 507, 1086
Zsp2I	ATGCAT	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.