Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003920

Physical Location & Seq

Genomic Coordinates Reverse (-)

51734444 .. 51737575

Gene Structure 3132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00203190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGCTGCTTCATCATCCCTGTTTTCATGTTCGATCCAAAGGGTAATGCCGTTTCAGAAAACAAAGACAGACTATAAACAGTTCCAGTGCAATTATTCAGACCTTGTCTGTAAGCAATTCAGTCACTCCAACTCAATGCACCTAAAACATCCAAGGTTGTTACCCAATGAGAAATTCTCACAAAGTGAGACTTTGTGTTGTGCACTGAAAGTTGAAAATTCACCTTCCTTTTTGGTGGGGAAGAAGTTTCAACTTGATGATGTGATTGAAGCTCAACAGTTTGATAGAGATATTCTGGGTGCTATATTTGAAGTGGCACGTGATATGGAGAAGATTGAAAAAAGATCACCAGGAAGCCAAATTCTTAAGGGATATCTCATGGCTACTCTCTTTTATGAACCCTCTACTAGAACTAGGCTGTCCTTTGAGTCTGCCATGAAACGGTTAGGTGGAGAAGTTTTGACAACTGAAAATGCAAGGGAGTTTTCTTCAGCAGCTAAAGGAGAAACACTTGAAGATAGTATAAGAACCGTTGAGGGTTACTCGGATATAATTGTGATGCGCCACTTTGAGAGTGGTGCAGCCAAAAGAGCAGCAGCAACTGCTGGCATTCCTGTAATTAATGCAGGAGATGGTCCTGGACAACACCCAACTCAGGCCCTTTTGGATGTCTATACTATTGAAAGAGAGATAGGAAAGCTGGATGGCATAAAAGTTGCACTTGTTGGAGATCTTGCCAATGGAAGGACAGTGCGTTCACTTGCATACTTGCTTGCCAGGTATAATGATGTCAAGATCTACTTCGTGTCTCCTGATGCAGTGAAAATGAAGAATGACATAAAAGATTATTTAACATCAAGGGAAGTTGAGTGGGAAGAAAGTGCTGATTTGATGGAAGTTGCATCTAAGTGTGACATTCTCTATCAAACTCGCATTCAGCGTGAGCGGTTTGGAGAAAGAATCGATCTCTATGAAGAAGCTCGAGGGAAGTACATTGTGGATCGTCATGTGTTAGAGGTGATGCAGAAGCATGCTGTGGTCATGCACCCTCTGCCTAGACTTGATGAGATTACTGTTGATGTTGATGGGGATCCGAGAGCTGCCTATTTCAGACAGGCAAAGAACGGCCTATATATTAGGATGGCCCTATTGAAACTTCTACTTGTAGGGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004070 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006220 GO:0006221 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009165 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009267 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016740 GO:0016741 GO:0016743 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034641 GO:0034654 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046390 GO:0046483 GO:0050896 GO:0051716 GO:0055086 GO:0071496 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00240 ko00250 ko01100 map00240 map00250 map01100

Pfam Domains

Protein Families

OTCace OTCace_N

Protein Analysis

391

Amino Acids

44.26

Weight (kDa)

6.73

Isoelectric Point (pI)

35.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OTCace_N	PF02729	87 - 228	6.2e-45	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
OTCace	PF00185	235 - 386	8.2e-33	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20330 AT3G20330
fragaria_vesca	FvH4_4g09330 FvH4_4g09330 FvH4_4g09330 FvH4_4g09330 FvH4_4g09330 FvH4_4g09330 FvH4_7g16631 FvH4_7g16631
malus_domestica	MD15G1397500.v1.1
prunus_persica	Prupe.4G221200_v2.0.a1
pyrus_communis	pycom15g35730
rosa_chinensis	RchiOBHm_Chr4g0402721 RchiOBHm_Chr6g0264841
rosa_laevigata	RLG00000009051 RLG00000014232
rosa_multiflora	Rmu_sc0000546.1_g000042 Rmu_sc0002451.1_g000002
rosa_roxburghii	Rroxscaffold_175G00432030 Rroxscaffold_5G00347480 Rroxscaffold_7G00203190
rosa_rugosa	Rorug04G0038000 Rorug06G0014400
rosa_samantha	Rh4AG115600 Rh4BG108100 Rh4CG122500 Rh4DG108100 Rh6AG134700 Rh6BG132300 Rh6CG130900 Rh6DG117900
rosa_wichuraiana	Rw4G009240 Rw6G011660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	946
AciI	CCGC	1 cut(s)	946
AclWI	GGATC	4 cut(s)	28, 1008, 1085, 1098
AcsI	RAATTY	3 cut(s)	173, 217, 360
AcuI	CTGAAG	1 cut(s)	474
AcvI	CACGTG	1 cut(s)	320
AdeI	CACNNNGTG	1 cut(s)	185
AfaI	GTAC	1 cut(s)	992
AfiI	CCNNNNNNNGG	3 cut(s)	441, 655, 744
AflII	CTTAAG	1 cut(s)	365
AgsI	TTSAA	8 cut(s)	215, 251, 269, 311, 338, 515, 683, 1153
AjnI	CCWGG	3 cut(s)	349, 637, 776
AjuI	GAANNNNNNNTTGG	2 cut(s)	158, 190
AloI	GAACNNNNNNTCC	2 cut(s)	739, 771
AluBI	AGCT	5 cut(s)	272, 497, 700, 980, 1100
AluI	AGCT	5 cut(s)	272, 497, 700, 980, 1100
Alw21I	GWGCWC	1 cut(s)	205
Alw26I	GTCTC	2 cut(s)	182, 813
Alw44I	GTGCAC	1 cut(s)	201
AlwI	GGATC	4 cut(s)	28, 1008, 1085, 1098
AlwNI	CAGNNNCTG	1 cut(s)	602
Ama87I	CYCGRG	1 cut(s)	981
AoxI	GGCC	3 cut(s)	657, 1126, 1143
ApaLI	GTGCAC	1 cut(s)	201
ApeKI	GCWGC	6 cut(s)	5, 494, 581, 593, 596, 1100
ApoI	RAATTY	3 cut(s)	173, 217, 360
AseI	ATTAAT	1 cut(s)	621
AspLEI	GCGC	1 cut(s)	564
AspS9I	GGNCC	3 cut(s)	635, 658, 1144
AsuHPI	GGTGA	3 cut(s)	213, 339, 1030
AvaI	CYCGRG	1 cut(s)	981
AvaII	GGWCC	1 cut(s)	635
BaeGI	GKGCMC	1 cut(s)	205
BamHI	GGATCC	1 cut(s)	1090
BbrPI	CACGTG	1 cut(s)	320
Bbv12I	GWGCWC	1 cut(s)	205
BbvI	GCAGC	5 cut(s)	506, 593, 605, 608, 1087
BccI	CCATC	5 cut(s)	626, 698, 886, 1079, 1135
BceAI	ACGGC	2 cut(s)	34, 1141
BciT130I	CCWGG	3 cut(s)	351, 639, 778
BcoDI	GTCTC	2 cut(s)	182, 813
BfaI	CTAG	3 cut(s)	408, 414, 1056
BfrI	CTTAAG	1 cut(s)	365
BglII	AGATCT	2 cut(s)	730, 795
BisI	GCNGC	6 cut(s)	6, 495, 582, 594, 597, 1101
BlsI	GCNGC	6 cut(s)	7, 496, 583, 595, 598, 1102
Bme1390I	CCNGG	3 cut(s)	351, 639, 778
Bme18I	GGWCC	1 cut(s)	635
BmeT110I	CYCGRG	1 cut(s)	981
BmgT120I	GGNCC	3 cut(s)	635, 658, 1144
BmiI	GGNNCC	1 cut(s)	1092
BmrFI	CCNGG	3 cut(s)	351, 639, 778
BmsI	GCATC	4 cut(s)	549, 805, 911, 1011
BplI	GAGNNNNNCTC	4 cut(s)	161, 193, 527, 559
Bsa29I	ATCGAT	1 cut(s)	963
BsaAI	YACGTR	1 cut(s)	320
BsaBI	GATNNNNATC	1 cut(s)	1089
BsaJI	CCNNGG	1 cut(s)	152
Bsc4I	CCNNNNNNNGG	3 cut(s)	441, 655, 744
Bse1I	ACTGG	1 cut(s)	85
Bse8I	GATNNNNATC	1 cut(s)	1089
BseBI	CCWGG	3 cut(s)	351, 639, 778
BseCI	ATCGAT	1 cut(s)	963
BseDI	CCNNGG	1 cut(s)	152
BseGI	GGATG	5 cut(s)	14, 148, 673, 709, 1146
BseJI	GATNNNNATC	1 cut(s)	1089
BseLI	CCNNNNNNNGG	3 cut(s)	441, 655, 744
BseMII	CTCAG	1 cut(s)	668
BseNI	ACTGG	1 cut(s)	85
BseSI	GKGCMC	1 cut(s)	205
BseXI	GCAGC	5 cut(s)	506, 593, 605, 608, 1087
BsgI	GTGCAG	1 cut(s)	600
BshFI	GGCC	3 cut(s)	659, 1128, 1145
BshVI	ATCGAT	1 cut(s)	963
BsiHKAI	GWGCWC	1 cut(s)	205
BsiHKCI	CYCGRG	1 cut(s)	981
BslI	CCNNNNNNNGG	3 cut(s)	441, 655, 744
BsmAI	GTCTC	2 cut(s)	182, 813
BsmI	GAATGC	2 cut(s)	609, 933
BsnI	GGCC	3 cut(s)	659, 1128, 1145
BsoBI	CYCGRG	1 cut(s)	981
Bsp1286I	GDGCHC	1 cut(s)	205
Bsp143I	GATC	7 cut(s)	33, 344, 730, 795, 964, 1000, 1090
BspACI	CCGC	1 cut(s)	946
BspANI	GGCC	3 cut(s)	659, 1128, 1145
BspCNI	CTCAG	1 cut(s)	667
BspDI	ATCGAT	1 cut(s)	963
BspLI	GGNNCC	1 cut(s)	1092
BspPI	GGATC	4 cut(s)	28, 1008, 1085, 1098
BspTI	CTTAAG	1 cut(s)	365
BsrBI	CCGCTC	1 cut(s)	946
BsrI	ACTGG	1 cut(s)	85
BssECI	CCNNGG	1 cut(s)	152
BssMI	GATC	7 cut(s)	33, 344, 730, 795, 964, 1000, 1090
BssT1I	CCWWGG	1 cut(s)	152
Bst2UI	CCWGG	3 cut(s)	351, 639, 778
Bst4CI	ACNGT	6 cut(s)	81, 279, 444, 532, 751, 1075
BstAFI	CTTAAG	1 cut(s)	365
BstAPI	GCANNNNNTGC	2 cut(s)	602, 1051
BstBAI	YACGTR	1 cut(s)	320
BstC8I	GCNNGC	3 cut(s)	607, 774, 1032
BstDEI	CTNAG	2 cut(s)	654, 906
BstF5I	GGATG	5 cut(s)	14, 148, 673, 709, 1146
BstHHI	GCGC	1 cut(s)	564
BstKTI	GATC	7 cut(s)	36, 347, 733, 798, 967, 1003, 1093
BstMAI	GTCTC	2 cut(s)	182, 813
BstMBI	GATC	7 cut(s)	33, 344, 730, 795, 964, 1000, 1090
BstMWI	GCNNNNNNNGC	3 cut(s)	590, 602, 1051
BstNI	CCWGG	3 cut(s)	351, 639, 778
BstNSI	RCATGY	1 cut(s)	1034
BstSCI	CCNGG	3 cut(s)	349, 637, 776
BstSLI	GKGCMC	1 cut(s)	205
BstV1I	GCAGC	5 cut(s)	506, 593, 605, 608, 1087
BstX2I	RGATCY	3 cut(s)	730, 795, 1090
BstYI	RGATCY	3 cut(s)	730, 795, 1090
Bsu15I	ATCGAT	1 cut(s)	963
BsuRI	GGCC	3 cut(s)	659, 1128, 1145
BsuTUI	ATCGAT	1 cut(s)	963
BtsCI	GGATG	5 cut(s)	14, 148, 673, 709, 1146
BtsI	GCAGTG	1 cut(s)	825
BtsIMutI	CAGTG	4 cut(s)	92, 203, 756, 825
Cac8I	GCNNGC	3 cut(s)	607, 774, 1032
CaiI	CAGNNNCTG	1 cut(s)	602
CfoI	GCGC	1 cut(s)	564
Cfr13I	GGNCC	3 cut(s)	635, 658, 1144
ClaI	ATCGAT	1 cut(s)	963
Csp6I	GTAC	1 cut(s)	991
CviAII	CATG	6 cut(s)	27, 379, 436, 1007, 1031, 1042
CviQI	GTAC	1 cut(s)	991
DdeI	CTNAG	2 cut(s)	654, 906
DpnI	GATC	7 cut(s)	35, 346, 732, 797, 966, 1002, 1092
DpnII	GATC	7 cut(s)	33, 344, 730, 795, 964, 1000, 1090
DraIII	CACNNNGTG	1 cut(s)	185
Eco130I	CCWWGG	1 cut(s)	152
Eco32I	GATATC	1 cut(s)	374
Eco47I	GGWCC	1 cut(s)	635
Eco57I	CTGAAG	1 cut(s)	474
Eco72I	CACGTG	1 cut(s)	320
Eco88I	CYCGRG	1 cut(s)	981
EcoO109I	RGGNCCY	1 cut(s)	658
EcoRII	CCWGG	3 cut(s)	349, 637, 776
EcoRV	GATATC	1 cut(s)	374
EcoT14I	CCWWGG	1 cut(s)	152
ErhI	CCWWGG	1 cut(s)	152
FaeI	CATG	6 cut(s)	30, 382, 439, 1010, 1034, 1045
FalI	AAGNNNNNCTT	6 cut(s)	175, 207, 705, 737, 785, 817
FatI	CATG	6 cut(s)	26, 378, 435, 1006, 1030, 1041
Fnu4HI	GCNGC	6 cut(s)	6, 495, 582, 594, 597, 1101
FokI	GGATG	4 cut(s)	135, 680, 716, 1153
Fsp4HI	GCNGC	6 cut(s)	6, 495, 582, 594, 597, 1101
FspBI	CTAG	3 cut(s)	408, 414, 1056
GlaI	GCGC	1 cut(s)	563
GluI	GCNGC	6 cut(s)	6, 495, 582, 594, 597, 1101
HaeIII	GGCC	3 cut(s)	659, 1128, 1145
HhaI	GCGC	1 cut(s)	564
Hin1II	CATG	6 cut(s)	30, 382, 439, 1010, 1034, 1045
Hin6I	GCGC	1 cut(s)	562
HinP1I	GCGC	1 cut(s)	562
HinfI	GANTC	2 cut(s)	428, 960
HphI	GGTGA	3 cut(s)	213, 339, 1030
Hpy166II	GTNNAC	2 cut(s)	203, 758
Hpy188I	TCNGA	5 cut(s)	57, 100, 547, 1095, 1112
Hpy188III	TCNNGA	2 cut(s)	793, 812
Hpy8I	GTNNAC	2 cut(s)	203, 758
HpyAV	CCTTC	2 cut(s)	234, 738
HpyCH4III	ACNGT	6 cut(s)	81, 279, 444, 532, 751, 1075
HpyCH4IV	ACGT	1 cut(s)	319
HpyF10VI	GCNNNNNNNGC	3 cut(s)	590, 602, 1051
HpyF3I	CTNAG	2 cut(s)	654, 906
HpySE526I	ACGT	1 cut(s)	319
Hsp92II	CATG	6 cut(s)	30, 382, 439, 1010, 1034, 1045
HspAI	GCGC	1 cut(s)	562
Kzo9I	GATC	7 cut(s)	33, 344, 730, 795, 964, 1000, 1090
Lsp1109I	GCAGC	5 cut(s)	506, 593, 605, 608, 1087
LweI	GCATC	4 cut(s)	549, 805, 911, 1011
MaeI	CTAG	3 cut(s)	408, 414, 1056
MaeII	ACGT	1 cut(s)	319
MaeIII	GTNAC	4 cut(s)	122, 159, 539, 911
MalI	GATC	7 cut(s)	35, 346, 732, 797, 966, 1002, 1092
MbiI	CCGCTC	1 cut(s)	946
MboI	GATC	7 cut(s)	33, 344, 730, 795, 964, 1000, 1090
MboII	GAAGA	7 cut(s)	253, 343, 480, 527, 841, 887, 986
MflI	RGATCY	3 cut(s)	730, 795, 1090
MhlI	GDGCHC	1 cut(s)	205
MluCI	AATT	7 cut(s)	91, 116, 173, 217, 360, 552, 618
MlyI	GAGTC	1 cut(s)	437
MmeI	TCCRAC	2 cut(s)	153, 706
MnlI	CCTC	5 cut(s)	412, 529, 977, 1009, 1059
MseI	TTAA	3 cut(s)	366, 621, 851
MslI	CAYNNNNRTG	1 cut(s)	907
MspCI	CTTAAG	1 cut(s)	365
MspR9I	CCNGG	3 cut(s)	351, 639, 778
Mva1269I	GAATGC	2 cut(s)	609, 933
MvaI	CCWGG	3 cut(s)	351, 639, 778
MwoI	GCNNNNNNNGC	3 cut(s)	590, 602, 1051
NdeII	GATC	7 cut(s)	33, 344, 730, 795, 964, 1000, 1090
NlaIII	CATG	6 cut(s)	30, 382, 439, 1010, 1034, 1045
NlaIV	GGNNCC	1 cut(s)	1092
NmuCI	GTSAC	2 cut(s)	122, 911
NspI	RCATGY	1 cut(s)	1034
PaeI	GCATGC	1 cut(s)	1034
PaeR7I	CTCGAG	1 cut(s)	981
PcsI	WCGNNNNNNNCGW	1 cut(s)	937
PctI	GAATGC	2 cut(s)	609, 933
PfeI	GAWTC	1 cut(s)	960
PflFI	GACNNNGTC	1 cut(s)	104
PfoI	TCCNGGA	1 cut(s)	637
PkrI	GCNGC	6 cut(s)	7, 496, 583, 595, 598, 1102
PleI	GAGTC	1 cut(s)	436
PmaCI	CACGTG	1 cut(s)	320
PmlI	CACGTG	1 cut(s)	320
PpsI	GAGTC	1 cut(s)	436
Ppu21I	YACGTR	1 cut(s)	320
PshBI	ATTAAT	1 cut(s)	621
Psp6I	CCWGG	3 cut(s)	349, 637, 776
PspCI	CACGTG	1 cut(s)	320
PspGI	CCWGG	3 cut(s)	349, 637, 776
PspN4I	GGNNCC	1 cut(s)	1092
PspPI	GGNCC	3 cut(s)	635, 658, 1144
PspXI	VCTCGAGB	1 cut(s)	981
PstNI	CAGNNNCTG	1 cut(s)	602
PsuI	RGATCY	3 cut(s)	730, 795, 1090
PsyI	GACNNNGTC	1 cut(s)	104
RsaI	GTAC	1 cut(s)	992
RsaNI	GTAC	1 cut(s)	991
RseI	CAYNNNNRTG	1 cut(s)	907
SaqAI	TTAA	3 cut(s)	366, 621, 851
SatI	GCNGC	6 cut(s)	6, 495, 582, 594, 597, 1101
Sau3AI	GATC	7 cut(s)	33, 344, 730, 795, 964, 1000, 1090
Sau96I	GGNCC	3 cut(s)	635, 658, 1144
SchI	GAGTC	1 cut(s)	437
ScrFI	CCNGG	3 cut(s)	351, 639, 778
SduI	GDGCHC	1 cut(s)	205
SfaNI	GCATC	4 cut(s)	549, 805, 911, 1011
Sfr274I	CTCGAG	1 cut(s)	981
SinI	GGWCC	1 cut(s)	635
SlaI	CTCGAG	1 cut(s)	981
SmiMI	CAYNNNNRTG	1 cut(s)	907
SmlI	CTYRAG	2 cut(s)	365, 981
SmoI	CTYRAG	2 cut(s)	365, 981
SphI	GCATGC	1 cut(s)	1034
Sse9I	AATT	7 cut(s)	91, 116, 173, 217, 360, 552, 618
SsiI	CCGC	1 cut(s)	946
SspMI	CTAG	3 cut(s)	408, 414, 1056
StyD4I	CCNGG	3 cut(s)	349, 637, 776
StyI	CCWWGG	1 cut(s)	152
TaaI	ACNGT	6 cut(s)	81, 279, 444, 532, 751, 1075
TaiI	ACGT	1 cut(s)	322
TaqI	TCGA	3 cut(s)	32, 963, 982
TasI	AATT	7 cut(s)	91, 116, 173, 217, 360, 552, 618
TatI	WGTACW	1 cut(s)	990
TfiI	GAWTC	1 cut(s)	960
Tru1I	TTAA	3 cut(s)	366, 621, 851
Tru9I	TTAA	3 cut(s)	366, 621, 851
TscAI	CASTG	4 cut(s)	92, 210, 756, 825
TseFI	GTSAC	2 cut(s)	122, 911
TseI	GCWGC	6 cut(s)	5, 494, 581, 593, 596, 1100
Tsp45I	GTSAC	2 cut(s)	122, 911
TspDTI	ATGAA	5 cut(s)	15, 411, 452, 842, 987
TspRI	CASTG	4 cut(s)	92, 210, 756, 825
Tth111I	GACNNNGTC	1 cut(s)	104
Vha464I	CTTAAG	1 cut(s)	365
VneI	GTGCAC	1 cut(s)	201
VpaK11BI	GGWCC	1 cut(s)	635
VspI	ATTAAT	1 cut(s)	621
XapI	RAATTY	3 cut(s)	173, 217, 360
XceI	RCATGY	1 cut(s)	1034
XcmI	CCANNNNNNNNNTGG	1 cut(s)	572
XhoI	CTCGAG	1 cut(s)	981
XspI	CTAG	3 cut(s)	408, 414, 1056

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.