FvH4_7g16631

Belongs to the ATCase OTCase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
14227578 .. 14230492
2915 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g16631.t1

Sequence Viewer

Length: 1122 bp
ATGGCTGCTTCATCGTCACTGTTTTCATGTTCCATCCAAGGGGCAGTGCCGTTTCAGAAACAGTCAGACCTTGTCTCAATGCAAATAAAACATCCAAGGTTGTTACTACCCAATGAGAAATTCTCACAAAGTCAGACTTTGTGTCGTGCACTGAAGACTGAGAATTTACCATCCTTTTCGGTGGGGAAAAAGTTTCAACTTGATGATGTGATTGAAGCTCAACAATTTGATAGAGATATTCTGGGTGCTATATTTGAAGTTGCACGTGATATGGAGAAGATTGAAAAAAGATCACCAGGGAGTCAAATTCTTAAGGGATATCTCATGGCTACTCTCTTTTATGAACCCTCTACTAGGACTAGGCTGTCCTTTGAGTCTGCCATGAAACGCTTAGGTGGAGAGGTTTTGACTACTGAGAATGCAAGGGAGTTTTCTTCAGCAGCTAAAGGAGAAACACTTGAAGATAGTATAAGAACTGTCGAGGGTTACTCGGATATAATTGTGATGCGCCACTTTGAGAGTGGTGCAGCCAAAAGAGCAGCAGCAACTGCTGGCATTCCTGTTATTAATGCAGGAGACGGTCCTGGACAACACCCAACTCAGGCCCTTTTGGATGTCTATACTATTGAAAGAGAGATAGGAAAGCTGGATGGCATAAAAGTTGCACTTGTTGGAGATCTTGCCCACGGAAGGACAGTGCGTTCACTAGCATACTTGCTTGCCAGGTATAATGATGTCAAGATCTACTTCGTCTCTCCTGATGCCGTGAAAATGAAGAATGACATAAAAGACTATTTGACATCAAGGAATGTTGAATGGGAAGAAAGTGCTGATTTGATGGAAGTTGCATCTAAGTGTGACATTCTCTATCAAACTCGCATTCAGCGTGAACGGTTCGGGGAAAGAATCGACCTCTATGAAGAAGCCCGAGGGAAGTACATTGTGGACCCTCGTGTGTTGGAGGTGATGCAGAAGCATGCTGTGATCATGCACCCTCTGCCGAGACTTGATGAGATCACTGTGGATGTTGATGGGGATCCGAGAGCTGCGTATTTCAGACAGGCAAAGAACGGCTTATATATTAGGATGGCTCTATTGAAACTCCTGCTTGTAGGTTGGTGA

Protein Analysis

374

Amino Acids

41.92

Weight (kDa)

6.63

Isoelectric Point (pI)

34.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTCace_N PF02729 69 - 210 5.6e-45 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
OTCace PF00185 217 - 368 6.3e-33 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 364
AclWI GGATC 2 cut(s) 1031, 1044
AcsI RAATTY 3 cut(s) 119, 163, 306
AcuI CTGAAG 2 cut(s) 173, 420
AcvI CACGTG 1 cut(s) 266
AfaI GTAC 1 cut(s) 938
AfiI CCNNNNNNNGG 4 cut(s) 39, 354, 601, 690
AflII CTTAAG 1 cut(s) 311
AgsI TTSAA 8 cut(s) 197, 215, 257, 284, 461, 629, 815, 1099
AhdI GACNNNNNGTC 1 cut(s) 141
AjnI CCWGG 3 cut(s) 295, 583, 722
AjuI GAANNNNNNNTTGG 2 cut(s) 104, 136
AloI GAACNNNNNNTCC 2 cut(s) 685, 717
AluBI AGCT 4 cut(s) 218, 443, 646, 1046
AluI AGCT 4 cut(s) 218, 443, 646, 1046
Alw21I GWGCWC 1 cut(s) 151
Alw26I GTCTC 4 cut(s) 79, 570, 757, 997
Alw44I GTGCAC 1 cut(s) 147
AlwI GGATC 2 cut(s) 1031, 1044
AlwNI CAGNNNCTG 1 cut(s) 548
Ama87I CYCGRG 1 cut(s) 927
AoxI GGCC 1 cut(s) 603
ApaLI GTGCAC 1 cut(s) 147
ApeKI GCWGC 6 cut(s) 5, 440, 527, 539, 542, 1046
ApoI RAATTY 3 cut(s) 119, 163, 306
AseI ATTAAT 1 cut(s) 567
AspLEI GCGC 1 cut(s) 510
AspS9I GGNCC 3 cut(s) 581, 604, 946
AsuHPI GGTGA 2 cut(s) 285, 976
AvaI CYCGRG 1 cut(s) 927
AvaII GGWCC 2 cut(s) 581, 946
BaeGI GKGCMC 1 cut(s) 151
BamHI GGATCC 1 cut(s) 1036
BauI CACGAG 1 cut(s) 951
BbrPI CACGTG 1 cut(s) 266
BbsI GAAGAC 1 cut(s) 161
Bbv12I GWGCWC 1 cut(s) 151
BbvI GCAGC 5 cut(s) 452, 539, 551, 554, 1033
BccI CCATC 6 cut(s) 41, 178, 644, 832, 1025, 1081
BceAI ACGGC 3 cut(s) 34, 749, 1087
BciT130I CCWGG 3 cut(s) 297, 585, 724
BclI TGATCA 1 cut(s) 984
BcoDI GTCTC 4 cut(s) 79, 570, 757, 997
BfaI CTAG 3 cut(s) 354, 360, 707
BfrI CTTAAG 1 cut(s) 311
BglII AGATCT 2 cut(s) 676, 741
BisI GCNGC 6 cut(s) 6, 441, 528, 540, 543, 1047
BlsI GCNGC 6 cut(s) 7, 442, 529, 541, 544, 1048
Bme1390I CCNGG 3 cut(s) 297, 585, 724
Bme18I GGWCC 2 cut(s) 581, 946
BmeRI GACNNNNNGTC 1 cut(s) 141
BmeT110I CYCGRG 1 cut(s) 927
BmgT120I GGNCC 3 cut(s) 581, 604, 946
BmiI GGNNCC 2 cut(s) 948, 1038
BmrFI CCNGG 3 cut(s) 297, 585, 724
BmsI GCATC 4 cut(s) 495, 751, 857, 957
BpiI GAAGAC 1 cut(s) 161
BplI GAGNNNNNCTC 4 cut(s) 107, 139, 473, 505
Bpu10I CCTNAGC 1 cut(s) 391
BsaAI YACGTR 1 cut(s) 266
BsaBI GATNNNNATC 1 cut(s) 1035
BsaJI CCNNGG 5 cut(s) 37, 95, 296, 685, 928
Bsc4I CCNNNNNNNGG 4 cut(s) 39, 354, 601, 690
Bse8I GATNNNNATC 1 cut(s) 1035
BseBI CCWGG 3 cut(s) 297, 585, 724
BseDI CCNNGG 5 cut(s) 37, 95, 296, 685, 928
BseGI GGATG 7 cut(s) 33, 91, 170, 619, 655, 1030, 1092
BseJI GATNNNNATC 1 cut(s) 1035
BseLI CCNNNNNNNGG 4 cut(s) 39, 354, 601, 690
BseMII CTCAG 3 cut(s) 150, 405, 614
BseSI GKGCMC 1 cut(s) 151
BseXI GCAGC 5 cut(s) 452, 539, 551, 554, 1033
BsgI GTGCAG 1 cut(s) 546
BshFI GGCC 1 cut(s) 605
BsiHKAI GWGCWC 1 cut(s) 151
BsiHKCI CYCGRG 1 cut(s) 927
BslI CCNNNNNNNGG 4 cut(s) 39, 354, 601, 690
BsmAI GTCTC 4 cut(s) 79, 570, 757, 997
BsmBI CGTCTC 2 cut(s) 570, 757
BsmI GAATGC 3 cut(s) 424, 555, 879
BsnI GGCC 1 cut(s) 605
BsoBI CYCGRG 1 cut(s) 927
Bsp1286I GDGCHC 1 cut(s) 151
Bsp143I GATC 6 cut(s) 290, 676, 741, 984, 1014, 1036
BspANI GGCC 1 cut(s) 605
BspCNI CTCAG 3 cut(s) 151, 406, 613
BspLI GGNNCC 2 cut(s) 948, 1038
BspPI GGATC 2 cut(s) 1031, 1044
BspTI CTTAAG 1 cut(s) 311
BssECI CCNNGG 5 cut(s) 37, 95, 296, 685, 928
BssMI GATC 6 cut(s) 290, 676, 741, 984, 1014, 1036
BssSI CACGAG 1 cut(s) 951
BssT1I CCWWGG 2 cut(s) 37, 95
Bst2BI CACGAG 1 cut(s) 951
Bst2UI CCWGG 3 cut(s) 297, 585, 724
Bst4CI ACNGT 7 cut(s) 21, 63, 478, 581, 697, 894, 1021
BstAFI CTTAAG 1 cut(s) 311
BstAPI GCANNNNNTGC 2 cut(s) 548, 997
BstBAI YACGTR 1 cut(s) 266
BstC8I GCNNGC 3 cut(s) 553, 720, 978
BstDEI CTNAG 5 cut(s) 159, 391, 414, 600, 852
BstDSI CCRYGG 1 cut(s) 685
BstENI CCTNNNNNAGG 1 cut(s) 352
BstF5I GGATG 7 cut(s) 33, 91, 170, 619, 655, 1030, 1092
BstHHI GCGC 1 cut(s) 510
BstKTI GATC 6 cut(s) 293, 679, 744, 987, 1017, 1039
BstMAI GTCTC 4 cut(s) 79, 570, 757, 997
BstMBI GATC 6 cut(s) 290, 676, 741, 984, 1014, 1036
BstMWI GCNNNNNNNGC 3 cut(s) 536, 548, 997
BstNI CCWGG 3 cut(s) 297, 585, 724
BstNSI RCATGY 1 cut(s) 980
BstSCI CCNGG 3 cut(s) 295, 583, 722
BstSLI GKGCMC 1 cut(s) 151
BstV1I GCAGC 5 cut(s) 452, 539, 551, 554, 1033
BstV2I GAAGAC 1 cut(s) 161
BstX2I RGATCY 3 cut(s) 676, 741, 1036
BstYI RGATCY 3 cut(s) 676, 741, 1036
BsuRI GGCC 1 cut(s) 605
BtgI CCRYGG 1 cut(s) 685
BtsCI GGATG 7 cut(s) 33, 91, 170, 619, 655, 1030, 1092
BtsI GCAGTG 1 cut(s) 51
BtsIMutI CAGTG 5 cut(s) 17, 51, 149, 702, 1017
Cac8I GCNNGC 3 cut(s) 553, 720, 978
CaiI CAGNNNCTG 1 cut(s) 548
CfoI GCGC 1 cut(s) 510
Cfr13I GGNCC 3 cut(s) 581, 604, 946
Csp6I GTAC 1 cut(s) 937
CviAII CATG 5 cut(s) 27, 325, 382, 977, 988
CviQI GTAC 1 cut(s) 937
DdeI CTNAG 5 cut(s) 159, 391, 414, 600, 852
DpnI GATC 6 cut(s) 292, 678, 743, 986, 1016, 1038
DpnII GATC 6 cut(s) 290, 676, 741, 984, 1014, 1036
DrdI GACNNNNNNGTC 1 cut(s) 364
DriI GACNNNNNGTC 1 cut(s) 141
DseDI GACNNNNNNGTC 1 cut(s) 364
Eam1105I GACNNNNNGTC 1 cut(s) 141
Eco130I CCWWGG 2 cut(s) 37, 95
Eco32I GATATC 1 cut(s) 320
Eco47I GGWCC 2 cut(s) 581, 946
Eco57I CTGAAG 2 cut(s) 173, 420
Eco72I CACGTG 1 cut(s) 266
Eco88I CYCGRG 1 cut(s) 927
EcoNI CCTNNNNNAGG 1 cut(s) 352
EcoO109I RGGNCCY 1 cut(s) 604
EcoRII CCWGG 3 cut(s) 295, 583, 722
EcoRV GATATC 1 cut(s) 320
EcoT14I CCWWGG 2 cut(s) 37, 95
ErhI CCWWGG 2 cut(s) 37, 95
Esp3I CGTCTC 2 cut(s) 570, 757
FaeI CATG 5 cut(s) 30, 328, 385, 980, 991
FalI AAGNNNNNCTT 8 cut(s) 121, 153, 651, 683, 731, 763, 1058, 1090
FatI CATG 5 cut(s) 26, 324, 381, 976, 987
FbaI TGATCA 1 cut(s) 984
Fnu4HI GCNGC 6 cut(s) 6, 441, 528, 540, 543, 1047
FokI GGATG 7 cut(s) 20, 78, 157, 626, 662, 1037, 1099
Fsp4HI GCNGC 6 cut(s) 6, 441, 528, 540, 543, 1047
FspBI CTAG 3 cut(s) 354, 360, 707
GlaI GCGC 1 cut(s) 509
GluI GCNGC 6 cut(s) 6, 441, 528, 540, 543, 1047
HaeIII GGCC 1 cut(s) 605
HhaI GCGC 1 cut(s) 510
Hin1II CATG 5 cut(s) 30, 328, 385, 980, 991
Hin6I GCGC 1 cut(s) 508
HinP1I GCGC 1 cut(s) 508
HinfI GANTC 3 cut(s) 301, 374, 906
HphI GGTGA 2 cut(s) 285, 976
Hpy166II GTNNAC 4 cut(s) 149, 704, 890, 946
Hpy188I TCNGA 6 cut(s) 57, 67, 135, 493, 1041, 1058
Hpy188III TCNNGA 2 cut(s) 739, 758
Hpy8I GTNNAC 4 cut(s) 149, 704, 890, 946
HpyAV CCTTC 1 cut(s) 684
HpyCH4III ACNGT 7 cut(s) 21, 63, 478, 581, 697, 894, 1021
HpyCH4IV ACGT 1 cut(s) 265
HpyF10VI GCNNNNNNNGC 3 cut(s) 536, 548, 997
HpyF3I CTNAG 5 cut(s) 159, 391, 414, 600, 852
HpySE526I ACGT 1 cut(s) 265
Hsp92II CATG 5 cut(s) 30, 328, 385, 980, 991
HspAI GCGC 1 cut(s) 508
Ksp22I TGATCA 1 cut(s) 984
Kzo9I GATC 6 cut(s) 290, 676, 741, 984, 1014, 1036
Lsp1109I GCAGC 5 cut(s) 452, 539, 551, 554, 1033
LweI GCATC 4 cut(s) 495, 751, 857, 957
MaeI CTAG 3 cut(s) 354, 360, 707
MaeII ACGT 1 cut(s) 265
MaeIII GTNAC 4 cut(s) 15, 102, 485, 857
MalI GATC 6 cut(s) 292, 678, 743, 986, 1016, 1038
MboI GATC 6 cut(s) 290, 676, 741, 984, 1014, 1036
MboII GAAGA 7 cut(s) 166, 289, 426, 473, 787, 833, 932
MflI RGATCY 3 cut(s) 676, 741, 1036
MhlI GDGCHC 1 cut(s) 151
MluCI AATT 5 cut(s) 119, 163, 224, 306, 498
MlyI GAGTC 2 cut(s) 310, 383
MmeI TCCRAC 2 cut(s) 652, 939
MnlI CCTC 8 cut(s) 358, 394, 475, 923, 923, 955, 960, 1005
MseI TTAA 2 cut(s) 312, 567
MslI CAYNNNNRTG 1 cut(s) 853
MspCI CTTAAG 1 cut(s) 311
MspR9I CCNGG 3 cut(s) 297, 585, 724
Mva1269I GAATGC 3 cut(s) 424, 555, 879
MvaI CCWGG 3 cut(s) 297, 585, 724
MwoI GCNNNNNNNGC 3 cut(s) 536, 548, 997
NdeII GATC 6 cut(s) 290, 676, 741, 984, 1014, 1036
NlaIII CATG 5 cut(s) 30, 328, 385, 980, 991
NlaIV GGNNCC 2 cut(s) 948, 1038
NmeAIII GCCGAG 1 cut(s) 1026
NmuCI GTSAC 2 cut(s) 15, 857
NspI RCATGY 1 cut(s) 980
PaeI GCATGC 1 cut(s) 980
PcsI WCGNNNNNNNCGW 1 cut(s) 883
PctI GAATGC 3 cut(s) 424, 555, 879
PfeI GAWTC 1 cut(s) 906
PflFI GACNNNGTC 1 cut(s) 71
PfoI TCCNGGA 1 cut(s) 583
PkrI GCNGC 6 cut(s) 7, 442, 529, 541, 544, 1048
PleI GAGTC 2 cut(s) 309, 382
PmaCI CACGTG 1 cut(s) 266
PmlI CACGTG 1 cut(s) 266
PpsI GAGTC 2 cut(s) 309, 382
Ppu21I YACGTR 1 cut(s) 266
PshBI ATTAAT 1 cut(s) 567
Psp6I CCWGG 3 cut(s) 295, 583, 722
PspCI CACGTG 1 cut(s) 266
PspGI CCWGG 3 cut(s) 295, 583, 722
PspN4I GGNNCC 2 cut(s) 948, 1038
PspPI GGNCC 3 cut(s) 581, 604, 946
PstNI CAGNNNCTG 1 cut(s) 548
PsuI RGATCY 3 cut(s) 676, 741, 1036
PsyI GACNNNGTC 1 cut(s) 71
RsaI GTAC 1 cut(s) 938
RsaNI GTAC 1 cut(s) 937
RseI CAYNNNNRTG 1 cut(s) 853
SaqAI TTAA 2 cut(s) 312, 567
SatI GCNGC 6 cut(s) 6, 441, 528, 540, 543, 1047
Sau3AI GATC 6 cut(s) 290, 676, 741, 984, 1014, 1036
Sau96I GGNCC 3 cut(s) 581, 604, 946
SchI GAGTC 2 cut(s) 310, 383
ScrFI CCNGG 3 cut(s) 297, 585, 724
SduI GDGCHC 1 cut(s) 151
SfaNI GCATC 4 cut(s) 495, 751, 857, 957
SinI GGWCC 2 cut(s) 581, 946
SmiMI CAYNNNNRTG 1 cut(s) 853
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
SphI GCATGC 1 cut(s) 980
Sse9I AATT 5 cut(s) 119, 163, 224, 306, 498
SspMI CTAG 3 cut(s) 354, 360, 707
StyD4I CCNGG 3 cut(s) 295, 583, 722
StyI CCWWGG 2 cut(s) 37, 95
TaaI ACNGT 7 cut(s) 21, 63, 478, 581, 697, 894, 1021
TaiI ACGT 1 cut(s) 268
TaqI TCGA 2 cut(s) 480, 909
TasI AATT 5 cut(s) 119, 163, 224, 306, 498
TatI WGTACW 1 cut(s) 936
TfiI GAWTC 1 cut(s) 906
Tru1I TTAA 2 cut(s) 312, 567
Tru9I TTAA 2 cut(s) 312, 567
TscAI CASTG 5 cut(s) 24, 51, 156, 702, 1024
TseFI GTSAC 2 cut(s) 15, 857
TseI GCWGC 6 cut(s) 5, 440, 527, 539, 542, 1046
Tsp45I GTSAC 2 cut(s) 15, 857
TspDTI ATGAA 5 cut(s) 15, 357, 398, 788, 933
TspGWI ACGGA 1 cut(s) 702
TspRI CASTG 5 cut(s) 24, 51, 156, 702, 1024
Tth111I GACNNNGTC 1 cut(s) 71
Vha464I CTTAAG 1 cut(s) 311
VneI GTGCAC 1 cut(s) 147
VpaK11BI GGWCC 2 cut(s) 581, 946
VspI ATTAAT 1 cut(s) 567
XagI CCTNNNNNAGG 1 cut(s) 352
XapI RAATTY 3 cut(s) 119, 163, 306
XceI RCATGY 1 cut(s) 980
XcmI CCANNNNNNNNNTGG 1 cut(s) 518
XspI CTAG 3 cut(s) 354, 360, 707
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.