Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002451.1

Orthogroup ID

OG0003920

Physical Location & Seq

Genomic Coordinates Reverse (-)

7897 .. 9799

Gene Structure 1903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002451.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

atgtgctataaagacttcaggagcagttatctagatgctgtctgcaaacaatctggtcgctccaactttatgtgctcaacacggtcaaggttgttacccaatgagacattatcaaaatgtgaacaggctgcgaaattctcacagaagaatgactttttgtgccgtgcattgaaaattgaaaattcatcttccttttcgacagggaagaagtttcaacttgatgatgtgattgaagctcaacaatttgatagagatattctcagtgccatttttgaagttgcacgtggtatggagaagattgagaagaattctctgggaagccaaattcttaagggttatcttatggctactctcttttatgaaccttccactagaactagactttcattcgagtctgccatgaaacggttgggcggggaagttttgactactgaaaatgcaagggagttttcttcagcagctaaaggagaaactcttgaagattctataagaactgttgaaggttactcagatataattgtaatgcgtcactttgagagtggcgcagcaaaaagagctgcagcaactgctgccattcctataattaatgcaggagatggtcctggacaacatccaacgcaggctcttttagatgtctacactattgaaagggagataggaaagctagatggaattcgagttgcgcttgttggtgatcttgctaatggaaggactgtgcgctcactggcatacttgcttgctaggtataatgatgtgaagatctatttcgtatctcctgatgtggttaaaatgaaggatgatataaaagattatttgacgtcaaagaaagttgagtgggaagaaagtggtgatttgatggaagttgcttccaagtgtgatgttctttatcaaactcgcattcagcgtgaacggtttggagaaagaattgacctctacgaagaagctcgaggcaagtacattgtagaccatcatgtgttggatgtgatgcagaagcatgctgtggtcatgcacccgctgcctagacttgatgagattaccgtggatgttgatggggatccgagagctgcctatttcagacaagcaaagaacggcctatacattaggatggcactcttgaaactactacttgtagggtggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004070 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006220 GO:0006221 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009165 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009267 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016740 GO:0016741 GO:0016743 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034641 GO:0034654 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046390 GO:0046483 GO:0050896 GO:0051716 GO:0055086 GO:0071496 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00240 ko00250 ko01100 map00240 map00250 map01100

Pfam Domains

Protein Families

OTCace OTCace_N

Protein Analysis

379

Amino Acids

42.81

Weight (kDa)

7.01

Isoelectric Point (pI)

30.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20330 AT3G20330
fragaria_vesca	FvH4_4g09330 FvH4_4g09330 FvH4_4g09330 FvH4_4g09330 FvH4_4g09330 FvH4_4g09330 FvH4_7g16631 FvH4_7g16631
malus_domestica	MD15G1397500.v1.1
prunus_persica	Prupe.4G221200_v2.0.a1
pyrus_communis	pycom15g35730
rosa_chinensis	RchiOBHm_Chr4g0402721 RchiOBHm_Chr6g0264841
rosa_laevigata	RLG00000009051 RLG00000014232
rosa_multiflora	Rmu_sc0000546.1_g000042 Rmu_sc0002451.1_g000002
rosa_roxburghii	Rroxscaffold_175G00432030 Rroxscaffold_5G00347480 Rroxscaffold_7G00203190
rosa_rugosa	Rorug04G0038000 Rorug06G0014400
rosa_samantha	Rh4AG115600 Rh4BG108100 Rh4CG122500 Rh4DG108100 Rh6AG134700 Rh6BG132300 Rh6CG130900 Rh6DG117900
rosa_wichuraiana	Rw4G009240 Rw6G011660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	821
AccI	GTMKAC	2 cut(s)	636, 963
AciI	CCGC	2 cut(s)	414, 1013
AclWI	GGATC	2 cut(s)	1049, 1062
AcsI	RAATTY	5 cut(s)	134, 181, 307, 324, 672
AcuI	CTGAAG	1 cut(s)	438
AcvI	CACGTG	1 cut(s)	284
AcyI	GRCGYC	1 cut(s)	818
AfaI	GTAC	1 cut(s)	956
AfiI	CCNNNNNNNGG	1 cut(s)	405
AflII	CTTAAG	1 cut(s)	329
AgsI	TTSAA	9 cut(s)	172, 179, 215, 233, 275, 479, 500, 647, 1117
AjnI	CCWGG	1 cut(s)	601
AluBI	AGCT	6 cut(s)	236, 461, 557, 664, 944, 1064
AluI	AGCT	6 cut(s)	236, 461, 557, 664, 944, 1064
Alw21I	GWGCWC	1 cut(s)	77
Alw26I	GTCTC	1 cut(s)	98
AlwI	GGATC	2 cut(s)	1049, 1062
AlwNI	CAGNNNCTG	1 cut(s)	566
Ama87I	CYCGRG	1 cut(s)	945
AoxI	GGCC	1 cut(s)	1090
ApeKI	GCWGC	8 cut(s)	128, 458, 545, 557, 560, 569, 1015, 1064
ApoI	RAATTY	5 cut(s)	134, 181, 307, 324, 672
AseI	ATTAAT	1 cut(s)	585
AspLEI	GCGC	3 cut(s)	545, 685, 720
AspS9I	GGNCC	1 cut(s)	599
AsuHPI	GGTGA	2 cut(s)	704, 860
AvaI	CYCGRG	1 cut(s)	945
AvaII	GGWCC	1 cut(s)	599
BamHI	GGATCC	1 cut(s)	1054
BbrPI	CACGTG	1 cut(s)	284
Bbv12I	GWGCWC	1 cut(s)	77
BbvI	GCAGC	8 cut(s)	115, 470, 544, 556, 557, 572, 1002, 1051
BccI	CCATC	6 cut(s)	590, 662, 850, 975, 1043, 1099
BceAI	ACGGC	2 cut(s)	147, 1105
BciT130I	CCWGG	1 cut(s)	603
BcoDI	GTCTC	1 cut(s)	98
BfaI	CTAG	6 cut(s)	32, 372, 378, 665, 741, 1020
BfmI	CTRYAG	1 cut(s)	558
BfrI	CTTAAG	1 cut(s)	329
BglII	AGATCT	1 cut(s)	759
BisI	GCNGC	8 cut(s)	129, 459, 546, 558, 561, 570, 1016, 1065
BlsI	GCNGC	8 cut(s)	130, 460, 547, 559, 562, 571, 1017, 1066
Bme1390I	CCNGG	1 cut(s)	603
Bme18I	GGWCC	1 cut(s)	599
BmeT110I	CYCGRG	1 cut(s)	945
BmgT120I	GGNCC	1 cut(s)	599
BmiI	GGNNCC	1 cut(s)	1056
BmrFI	CCNGG	1 cut(s)	603
BmsI	GCATC	2 cut(s)	25, 975
BplI	GAGNNNNNCTC	2 cut(s)	243, 275
BsaAI	YACGTR	1 cut(s)	284
BsaBI	GATNNNNATC	1 cut(s)	1053
BsaHI	GRCGYC	1 cut(s)	818
BsaJI	CCNNGG	1 cut(s)	1038
Bsc4I	CCNNNNNNNGG	1 cut(s)	405
Bse1I	ACTGG	1 cut(s)	729
Bse8I	GATNNNNATC	1 cut(s)	1053
BseBI	CCWGG	1 cut(s)	603
BseDI	CCNNGG	1 cut(s)	1038
BseGI	GGATG	5 cut(s)	610, 802, 985, 1048, 1110
BseJI	GATNNNNATC	1 cut(s)	1053
BseLI	CCNNNNNNNGG	1 cut(s)	405
BseMII	CTCAG	2 cut(s)	274, 522
BseNI	ACTGG	1 cut(s)	729
BseXI	GCAGC	8 cut(s)	115, 470, 544, 556, 557, 572, 1002, 1051
BshFI	GGCC	1 cut(s)	1092
BsiHKAI	GWGCWC	1 cut(s)	77
BsiHKCI	CYCGRG	1 cut(s)	945
BslI	CCNNNNNNNGG	1 cut(s)	405
BsmAI	GTCTC	1 cut(s)	98
BsmI	GAATGC	1 cut(s)	897
BsnI	GGCC	1 cut(s)	1092
BsoBI	CYCGRG	1 cut(s)	945
Bsp1286I	GDGCHC	1 cut(s)	77
Bsp143I	GATC	3 cut(s)	694, 759, 1054
BspACI	CCGC	2 cut(s)	414, 1013
BspANI	GGCC	1 cut(s)	1092
BspCNI	CTCAG	2 cut(s)	273, 521
BspLI	GGNNCC	1 cut(s)	1056
BspMAI	CTGCAG	1 cut(s)	562
BspPI	GGATC	2 cut(s)	1049, 1062
BspTI	CTTAAG	1 cut(s)	329
BsrI	ACTGG	1 cut(s)	729
BssECI	CCNNGG	1 cut(s)	1038
BssMI	GATC	3 cut(s)	694, 759, 1054
BssNI	GRCGYC	1 cut(s)	818
Bst2UI	CCWGG	1 cut(s)	603
Bst4CI	ACNGT	6 cut(s)	84, 408, 496, 715, 912, 1039
BstACI	GRCGYC	1 cut(s)	818
BstAFI	CTTAAG	1 cut(s)	329
BstAPI	GCANNNNNTGC	3 cut(s)	566, 569, 1015
BstBAI	YACGTR	1 cut(s)	284
BstC8I	GCNNGC	3 cut(s)	621, 738, 996
BstDEI	CTNAG	2 cut(s)	260, 508
BstDSI	CCRYGG	1 cut(s)	1038
BstF5I	GGATG	5 cut(s)	610, 802, 985, 1048, 1110
BstHHI	GCGC	3 cut(s)	545, 685, 720
BstKTI	GATC	3 cut(s)	697, 762, 1057
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	3 cut(s)	694, 759, 1054
BstMWI	GCNNNNNNNGC	4 cut(s)	554, 566, 569, 1015
BstNI	CCWGG	1 cut(s)	603
BstNSI	RCATGY	1 cut(s)	998
BstSCI	CCNGG	1 cut(s)	601
BstSFI	CTRYAG	1 cut(s)	558
BstV1I	GCAGC	8 cut(s)	115, 470, 544, 556, 557, 572, 1002, 1051
BstX2I	RGATCY	2 cut(s)	759, 1054
BstYI	RGATCY	2 cut(s)	759, 1054
BsuRI	GGCC	1 cut(s)	1092
BtgI	CCRYGG	1 cut(s)	1038
BtsCI	GGATG	5 cut(s)	610, 802, 985, 1048, 1110
BtsIMutI	CAGTG	2 cut(s)	268, 722
Cac8I	GCNNGC	3 cut(s)	621, 738, 996
CaiI	CAGNNNCTG	1 cut(s)	566
CfoI	GCGC	3 cut(s)	545, 685, 720
Cfr13I	GGNCC	1 cut(s)	599
CseI	GACGC	1 cut(s)	515
Csp6I	GTAC	1 cut(s)	955
CviAII	CATG	4 cut(s)	400, 971, 995, 1006
CviQI	GTAC	1 cut(s)	955
DdeI	CTNAG	2 cut(s)	260, 508
DpnI	GATC	3 cut(s)	696, 761, 1056
DpnII	GATC	3 cut(s)	694, 759, 1054
Eco47I	GGWCC	1 cut(s)	599
Eco57I	CTGAAG	1 cut(s)	438
Eco72I	CACGTG	1 cut(s)	284
Eco88I	CYCGRG	1 cut(s)	945
EcoRI	GAATTC	2 cut(s)	307, 672
EcoRII	CCWGG	1 cut(s)	601
FaeI	CATG	4 cut(s)	403, 974, 998, 1009
FalI	AAGNNNNNCTT	2 cut(s)	137, 169
FatI	CATG	4 cut(s)	399, 970, 994, 1005
FauI	CCCGC	2 cut(s)	407, 1020
FblI	GTMKAC	2 cut(s)	636, 963
Fnu4HI	GCNGC	8 cut(s)	129, 459, 546, 558, 561, 570, 1016, 1065
FokI	GGATG	5 cut(s)	597, 809, 992, 1055, 1117
Fsp4HI	GCNGC	8 cut(s)	129, 459, 546, 558, 561, 570, 1016, 1065
FspBI	CTAG	6 cut(s)	32, 372, 378, 665, 741, 1020
GlaI	GCGC	3 cut(s)	544, 684, 719
GluI	GCNGC	8 cut(s)	129, 459, 546, 558, 561, 570, 1016, 1065
HaeIII	GGCC	1 cut(s)	1092
HgaI	GACGC	1 cut(s)	515
HhaI	GCGC	3 cut(s)	545, 685, 720
Hin1I	GRCGYC	1 cut(s)	818
Hin1II	CATG	4 cut(s)	403, 974, 998, 1009
Hin6I	GCGC	3 cut(s)	543, 683, 718
HinP1I	GCGC	3 cut(s)	543, 683, 718
HinfI	GANTC	2 cut(s)	392, 482
HphI	GGTGA	2 cut(s)	704, 860
Hpy166II	GTNNAC	4 cut(s)	122, 637, 908, 964
Hpy188I	TCNGA	3 cut(s)	511, 1059, 1076
Hpy188III	TCNNGA	5 cut(s)	19, 32, 476, 776, 1114
Hpy8I	GTNNAC	4 cut(s)	122, 637, 908, 964
HpyAV	CCTTC	4 cut(s)	375, 494, 702, 787
HpyCH4III	ACNGT	6 cut(s)	84, 408, 496, 715, 912, 1039
HpyCH4IV	ACGT	2 cut(s)	283, 818
HpyCH4V	TGCA	8 cut(s)	45, 167, 281, 440, 560, 590, 988, 1009
HpyF10VI	GCNNNNNNNGC	4 cut(s)	554, 566, 569, 1015
HpyF3I	CTNAG	2 cut(s)	260, 508
HpySE526I	ACGT	2 cut(s)	283, 818
Hsp92I	GRCGYC	1 cut(s)	818
Hsp92II	CATG	4 cut(s)	403, 974, 998, 1009
HspAI	GCGC	3 cut(s)	543, 683, 718
Kzo9I	GATC	3 cut(s)	694, 759, 1054
LmnI	GCTCC	2 cut(s)	21, 65
Lsp1109I	GCAGC	8 cut(s)	115, 470, 544, 556, 557, 572, 1002, 1051
LweI	GCATC	2 cut(s)	25, 975
MaeI	CTAG	6 cut(s)	32, 372, 378, 665, 741, 1020
MaeII	ACGT	2 cut(s)	283, 818
MaeIII	GTNAC	3 cut(s)	93, 503, 527
MalI	GATC	3 cut(s)	696, 761, 1056
MboI	GATC	3 cut(s)	694, 759, 1054
MflI	RGATCY	2 cut(s)	759, 1054
MhlI	GDGCHC	1 cut(s)	77
MlyI	GAGTC	1 cut(s)	401
MmeI	TCCRAC	3 cut(s)	87, 638, 957
MnlI	CCTC	2 cut(s)	941, 941
MseI	TTAA	3 cut(s)	330, 585, 786
MslI	CAYNNNNRTG	1 cut(s)	1103
MspA1I	CMGCKG	1 cut(s)	1015
MspCI	CTTAAG	1 cut(s)	329
MspR9I	CCNGG	1 cut(s)	603
Mva1269I	GAATGC	1 cut(s)	897
MvaI	CCWGG	1 cut(s)	603
MwoI	GCNNNNNNNGC	4 cut(s)	554, 566, 569, 1015
NdeII	GATC	3 cut(s)	694, 759, 1054
NlaIII	CATG	4 cut(s)	403, 974, 998, 1009
NlaIV	GGNNCC	1 cut(s)	1056
NmuCI	GTSAC	1 cut(s)	527
NspI	RCATGY	1 cut(s)	998
PaeI	GCATGC	1 cut(s)	998
PaeR7I	CTCGAG	1 cut(s)	945
PcsI	WCGNNNNNNNCGW	1 cut(s)	901
PctI	GAATGC	1 cut(s)	897
PfeI	GAWTC	1 cut(s)	482
PfoI	TCCNGGA	1 cut(s)	601
PkrI	GCNGC	8 cut(s)	130, 460, 547, 559, 562, 571, 1017, 1066
PleI	GAGTC	1 cut(s)	400
PmaCI	CACGTG	1 cut(s)	284
PmlI	CACGTG	1 cut(s)	284
PpsI	GAGTC	1 cut(s)	400
Ppu21I	YACGTR	1 cut(s)	284
PshBI	ATTAAT	1 cut(s)	585
Psp6I	CCWGG	1 cut(s)	601
PspCI	CACGTG	1 cut(s)	284
PspGI	CCWGG	1 cut(s)	601
PspN4I	GGNNCC	1 cut(s)	1056
PspPI	GGNCC	1 cut(s)	599
PspXI	VCTCGAGB	1 cut(s)	945
PsrI	GAACNNNNNNTAC	2 cut(s)	1079, 1111
PstI	CTGCAG	1 cut(s)	562
PstNI	CAGNNNCTG	1 cut(s)	566
PsuI	RGATCY	2 cut(s)	759, 1054
RsaI	GTAC	1 cut(s)	956
RsaNI	GTAC	1 cut(s)	955
RseI	CAYNNNNRTG	1 cut(s)	1103
SaqAI	TTAA	3 cut(s)	330, 585, 786
SatI	GCNGC	8 cut(s)	129, 459, 546, 558, 561, 570, 1016, 1065
Sau3AI	GATC	3 cut(s)	694, 759, 1054
Sau96I	GGNCC	1 cut(s)	599
SchI	GAGTC	1 cut(s)	401
ScrFI	CCNGG	1 cut(s)	603
SduI	GDGCHC	1 cut(s)	77
SfaNI	GCATC	2 cut(s)	25, 975
SfcI	CTRYAG	1 cut(s)	558
Sfr274I	CTCGAG	1 cut(s)	945
SinI	GGWCC	1 cut(s)	599
SlaI	CTCGAG	1 cut(s)	945
SmiMI	CAYNNNNRTG	1 cut(s)	1103
SmlI	CTYRAG	2 cut(s)	329, 945
SmoI	CTYRAG	2 cut(s)	329, 945
SphI	GCATGC	1 cut(s)	998
SsiI	CCGC	2 cut(s)	414, 1013
SspMI	CTAG	6 cut(s)	32, 372, 378, 665, 741, 1020
StyD4I	CCNGG	1 cut(s)	601
TaaI	ACNGT	6 cut(s)	84, 408, 496, 715, 912, 1039
TaiI	ACGT	2 cut(s)	286, 821
TaqI	TCGA	4 cut(s)	197, 390, 676, 946
TatI	WGTACW	1 cut(s)	954
TfiI	GAWTC	1 cut(s)	482
Tru1I	TTAA	3 cut(s)	330, 585, 786
Tru9I	TTAA	3 cut(s)	330, 585, 786
TscAI	CASTG	2 cut(s)	268, 729
TseFI	GTSAC	1 cut(s)	527
TseI	GCWGC	8 cut(s)	128, 458, 545, 557, 560, 569, 1015, 1064
Tsp45I	GTSAC	1 cut(s)	527
TspDTI	ATGAA	5 cut(s)	174, 375, 375, 416, 806
TspRI	CASTG	2 cut(s)	268, 729
Vha464I	CTTAAG	1 cut(s)	329
VpaK11BI	GGWCC	1 cut(s)	599
VspI	ATTAAT	1 cut(s)	585
XapI	RAATTY	5 cut(s)	134, 181, 307, 324, 672
XbaI	TCTAGA	1 cut(s)	31
XceI	RCATGY	1 cut(s)	998
XcmI	CCANNNNNNNNNTGG	1 cut(s)	406
XhoI	CTCGAG	1 cut(s)	945
XmiI	GTMKAC	2 cut(s)	636, 963
XspI	CTAG	6 cut(s)	32, 372, 378, 665, 741, 1020
ZraI	GACGTC	1 cut(s)	819

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.