Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0003920

Physical Location & Seq

Genomic Coordinates Reverse (-)

18382337 .. 18384164

Gene Structure 1828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG108100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGTGCTCAACACGGTCAAGGTCGTTACCCAATGAGACATTATCAAAATGTGAACAGGCTGCGAAATTCTCACAGAAGAATGAGTTTTTGTGCCGTGCATTGAAAATTGAAAATTCATCTTCCTTTTCGACAGGGAAGAAGTTTCAACTTGATGATGTGATTGAAGCTCAACAATTTGATAGAGATATTCTCAGTGCTATTTTTGAAGTTGCACGTGGTATGGAGAAGATTGAGAAGAATTCTCTGGGAAGCCAAATTCTTAAGGGTTATCTTATGGCTACTCTCTTTTATGAACCCTCCACTAGAACTAGACTTTCATTCGAGTCTGCCATGAAACGGTTGGGTGGGGAAGTTTTGACTACTGAAAATGCAAGGGAGTTTTCTTCAGCAGCTAAAGGAGAAACTCTTGAAGATTCTATAAGAACTGTTGAAGGTTACTCGGATATAATTGTAATGCGTCACTTTGAGAGTGGCGCAGCAAAAAGAGCTGCAGCAACTGCTGCCATTCCTATAATTAATGCAGGAGATGGTCCTGGACAACATCCAACGCAGGCTCTTTTAGATGTCTACACTATTGAAAGGGAGATAGGAAAGCTAGATGGAATTAGAGTTGCGCTTGTTGGTGATCTTGCTAATGGAAGGACTGTGCGCTCACTGGCATACTTGCTTGCTAGGTATAACGATGTGAAGATCTATTTCGTATCTCCTGATGCGGTTAAAATGAAGGATGATATAAAAGATTATTTGACGTCAAAGAAAGTTGAGTGGGAAGAAAGTGGTGATTTGATGGAAGTTGCTTCCAAGTGTGATGTTCTTTATCAAACTCGCATTCAGCGTGAACGGTTTGGAGAAAGAATTGACCTCTATGAAGAAGCTCGAGGCAAGTACATTGTGGACCATCATGTGTTGGATGTGATGCAGAAGCATGCTGTGGTCATGCACCCGCTGCCTAGACTTGATGAGATTACTGTGGATGTTGATGGGGATCCGAGAGCTGCCTATTTCAGACAAGCAAAGAACGGCCTATACATTAGGATGGCACTCTTGAAACTACTACTTGTAGGGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004070 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006220 GO:0006221 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009165 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009267 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016740 GO:0016741 GO:0016743 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034641 GO:0034654 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046390 GO:0046483 GO:0050896 GO:0051716 GO:0055086 GO:0071496 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00240 ko00250 ko01100 map00240 map00250 map01100

Pfam Domains

Protein Families

OTCace OTCace_N

Protein Analysis

356

Amino Acids

40.08

Weight (kDa)

6.36

Isoelectric Point (pI)

29.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OTCace_N	PF02729	52 - 193	2.7e-44	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
OTCace	PF00185	200 - 351	2.4e-32	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20330 AT3G20330
fragaria_vesca	FvH4_4g09330 FvH4_4g09330 FvH4_4g09330 FvH4_4g09330 FvH4_4g09330 FvH4_4g09330 FvH4_7g16631 FvH4_7g16631
malus_domestica	MD15G1397500.v1.1
prunus_persica	Prupe.4G221200_v2.0.a1
pyrus_communis	pycom15g35730
rosa_chinensis	RchiOBHm_Chr4g0402721 RchiOBHm_Chr6g0264841
rosa_laevigata	RLG00000009051 RLG00000014232
rosa_multiflora	Rmu_sc0000546.1_g000042 Rmu_sc0002451.1_g000002
rosa_roxburghii	Rroxscaffold_175G00432030 Rroxscaffold_5G00347480 Rroxscaffold_7G00203190
rosa_rugosa	Rorug04G0038000 Rorug06G0014400
rosa_samantha	Rh4AG115600 Rh4BG108100 Rh4CG122500 Rh4DG108100 Rh6AG134700 Rh6BG132300 Rh6CG130900 Rh6DG117900
rosa_wichuraiana	Rw4G009240 Rw6G011660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	752
AccI	GTMKAC	1 cut(s)	567
AciI	CCGC	2 cut(s)	713, 944
AclWI	GGATC	2 cut(s)	980, 993
AcsI	RAATTY	4 cut(s)	65, 112, 238, 255
AcuI	CTGAAG	1 cut(s)	369
AcvI	CACGTG	1 cut(s)	215
AcyI	GRCGYC	1 cut(s)	749
AfaI	GTAC	1 cut(s)	887
AfiI	CCNNNNNNNGG	1 cut(s)	336
AflII	CTTAAG	1 cut(s)	260
AgsI	TTSAA	9 cut(s)	103, 110, 146, 164, 206, 410, 431, 578, 1048
AjnI	CCWGG	1 cut(s)	532
AluBI	AGCT	6 cut(s)	167, 392, 488, 595, 875, 995
AluI	AGCT	6 cut(s)	167, 392, 488, 595, 875, 995
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	29
AlwI	GGATC	2 cut(s)	980, 993
AlwNI	CAGNNNCTG	1 cut(s)	497
Ama87I	CYCGRG	1 cut(s)	876
AoxI	GGCC	1 cut(s)	1021
ApeKI	GCWGC	8 cut(s)	59, 389, 476, 488, 491, 500, 946, 995
ApoI	RAATTY	4 cut(s)	65, 112, 238, 255
AseI	ATTAAT	1 cut(s)	516
AspLEI	GCGC	3 cut(s)	476, 616, 651
AspS9I	GGNCC	2 cut(s)	530, 895
AsuHPI	GGTGA	2 cut(s)	635, 791
AvaI	CYCGRG	1 cut(s)	876
AvaII	GGWCC	2 cut(s)	530, 895
BamHI	GGATCC	1 cut(s)	985
BbrPI	CACGTG	1 cut(s)	215
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	8 cut(s)	46, 401, 475, 487, 488, 503, 933, 982
BccI	CCATC	6 cut(s)	521, 593, 781, 906, 974, 1030
BceAI	ACGGC	2 cut(s)	78, 1036
BciT130I	CCWGG	1 cut(s)	534
BcoDI	GTCTC	1 cut(s)	29
BfaI	CTAG	5 cut(s)	303, 309, 596, 672, 951
BfmI	CTRYAG	1 cut(s)	489
BfrI	CTTAAG	1 cut(s)	260
BglII	AGATCT	1 cut(s)	690
BisI	GCNGC	8 cut(s)	60, 390, 477, 489, 492, 501, 947, 996
BlsI	GCNGC	8 cut(s)	61, 391, 478, 490, 493, 502, 948, 997
Bme1390I	CCNGG	1 cut(s)	534
Bme18I	GGWCC	2 cut(s)	530, 895
BmeT110I	CYCGRG	1 cut(s)	876
BmgT120I	GGNCC	2 cut(s)	530, 895
BmiI	GGNNCC	1 cut(s)	987
BmrFI	CCNGG	1 cut(s)	534
BmsI	GCATC	2 cut(s)	700, 906
BplI	GAGNNNNNCTC	2 cut(s)	174, 206
BsaAI	YACGTR	1 cut(s)	215
BsaBI	GATNNNNATC	1 cut(s)	984
BsaHI	GRCGYC	1 cut(s)	749
Bsc4I	CCNNNNNNNGG	1 cut(s)	336
Bse1I	ACTGG	1 cut(s)	660
Bse8I	GATNNNNATC	1 cut(s)	984
BseBI	CCWGG	1 cut(s)	534
BseGI	GGATG	5 cut(s)	541, 733, 916, 979, 1041
BseJI	GATNNNNATC	1 cut(s)	984
BseLI	CCNNNNNNNGG	1 cut(s)	336
BseMII	CTCAG	1 cut(s)	205
BseNI	ACTGG	1 cut(s)	660
BseXI	GCAGC	8 cut(s)	46, 401, 475, 487, 488, 503, 933, 982
BshFI	GGCC	1 cut(s)	1023
BsiHKAI	GWGCWC	1 cut(s)	8
BsiHKCI	CYCGRG	1 cut(s)	876
BslI	CCNNNNNNNGG	1 cut(s)	336
BsmAI	GTCTC	1 cut(s)	29
BsmI	GAATGC	1 cut(s)	828
BsnI	GGCC	1 cut(s)	1023
BsoBI	CYCGRG	1 cut(s)	876
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	3 cut(s)	625, 690, 985
BspACI	CCGC	2 cut(s)	713, 944
BspANI	GGCC	1 cut(s)	1023
BspCNI	CTCAG	1 cut(s)	204
BspLI	GGNNCC	1 cut(s)	987
BspMAI	CTGCAG	1 cut(s)	493
BspPI	GGATC	2 cut(s)	980, 993
BspTI	CTTAAG	1 cut(s)	260
BsrI	ACTGG	1 cut(s)	660
BssMI	GATC	3 cut(s)	625, 690, 985
BssNI	GRCGYC	1 cut(s)	749
Bst2UI	CCWGG	1 cut(s)	534
Bst4CI	ACNGT	6 cut(s)	15, 339, 427, 646, 843, 970
BstACI	GRCGYC	1 cut(s)	749
BstAFI	CTTAAG	1 cut(s)	260
BstAPI	GCANNNNNTGC	3 cut(s)	497, 500, 946
BstBAI	YACGTR	1 cut(s)	215
BstC8I	GCNNGC	3 cut(s)	552, 669, 927
BstDEI	CTNAG	1 cut(s)	191
BstF5I	GGATG	5 cut(s)	541, 733, 916, 979, 1041
BstHHI	GCGC	3 cut(s)	476, 616, 651
BstKTI	GATC	3 cut(s)	628, 693, 988
BstMAI	GTCTC	1 cut(s)	29
BstMBI	GATC	3 cut(s)	625, 690, 985
BstMWI	GCNNNNNNNGC	4 cut(s)	485, 497, 500, 946
BstNI	CCWGG	1 cut(s)	534
BstNSI	RCATGY	1 cut(s)	929
BstSCI	CCNGG	1 cut(s)	532
BstSFI	CTRYAG	1 cut(s)	489
BstV1I	GCAGC	8 cut(s)	46, 401, 475, 487, 488, 503, 933, 982
BstX2I	RGATCY	2 cut(s)	690, 985
BstYI	RGATCY	2 cut(s)	690, 985
BsuRI	GGCC	1 cut(s)	1023
BtsCI	GGATG	5 cut(s)	541, 733, 916, 979, 1041
BtsIMutI	CAGTG	2 cut(s)	199, 653
Cac8I	GCNNGC	3 cut(s)	552, 669, 927
CaiI	CAGNNNCTG	1 cut(s)	497
CfoI	GCGC	3 cut(s)	476, 616, 651
Cfr13I	GGNCC	2 cut(s)	530, 895
CseI	GACGC	1 cut(s)	446
Csp6I	GTAC	1 cut(s)	886
CviAII	CATG	4 cut(s)	331, 902, 926, 937
CviQI	GTAC	1 cut(s)	886
DdeI	CTNAG	1 cut(s)	191
DpnI	GATC	3 cut(s)	627, 692, 987
DpnII	GATC	3 cut(s)	625, 690, 985
Eco47I	GGWCC	2 cut(s)	530, 895
Eco57I	CTGAAG	1 cut(s)	369
Eco72I	CACGTG	1 cut(s)	215
Eco88I	CYCGRG	1 cut(s)	876
EcoRI	GAATTC	1 cut(s)	238
EcoRII	CCWGG	1 cut(s)	532
FaeI	CATG	4 cut(s)	334, 905, 929, 940
FatI	CATG	4 cut(s)	330, 901, 925, 936
FauI	CCCGC	1 cut(s)	951
FblI	GTMKAC	1 cut(s)	567
Fnu4HI	GCNGC	8 cut(s)	60, 390, 477, 489, 492, 501, 947, 996
FokI	GGATG	5 cut(s)	528, 740, 923, 986, 1048
Fsp4HI	GCNGC	8 cut(s)	60, 390, 477, 489, 492, 501, 947, 996
FspBI	CTAG	5 cut(s)	303, 309, 596, 672, 951
GlaI	GCGC	3 cut(s)	475, 615, 650
GluI	GCNGC	8 cut(s)	60, 390, 477, 489, 492, 501, 947, 996
HaeIII	GGCC	1 cut(s)	1023
HgaI	GACGC	1 cut(s)	446
HhaI	GCGC	3 cut(s)	476, 616, 651
Hin1I	GRCGYC	1 cut(s)	749
Hin1II	CATG	4 cut(s)	334, 905, 929, 940
Hin6I	GCGC	3 cut(s)	474, 614, 649
HinP1I	GCGC	3 cut(s)	474, 614, 649
HinfI	GANTC	2 cut(s)	323, 413
HphI	GGTGA	2 cut(s)	635, 791
Hpy166II	GTNNAC	4 cut(s)	53, 568, 839, 895
Hpy188I	TCNGA	3 cut(s)	442, 990, 1007
Hpy188III	TCNNGA	3 cut(s)	407, 707, 1045
Hpy8I	GTNNAC	4 cut(s)	53, 568, 839, 895
HpyAV	CCTTC	3 cut(s)	425, 633, 718
HpyCH4III	ACNGT	6 cut(s)	15, 339, 427, 646, 843, 970
HpyCH4IV	ACGT	2 cut(s)	214, 749
HpyCH4V	TGCA	7 cut(s)	98, 212, 371, 491, 521, 919, 940
HpyF10VI	GCNNNNNNNGC	4 cut(s)	485, 497, 500, 946
HpyF3I	CTNAG	1 cut(s)	191
HpySE526I	ACGT	2 cut(s)	214, 749
Hsp92I	GRCGYC	1 cut(s)	749
Hsp92II	CATG	4 cut(s)	334, 905, 929, 940
HspAI	GCGC	3 cut(s)	474, 614, 649
Kzo9I	GATC	3 cut(s)	625, 690, 985
LpnPI	CCDG	9 cut(s)	41, 117, 230, 507, 519, 536, 546, 641, 720
Lsp1109I	GCAGC	8 cut(s)	46, 401, 475, 487, 488, 503, 933, 982
LweI	GCATC	2 cut(s)	700, 906
MaeI	CTAG	5 cut(s)	303, 309, 596, 672, 951
MaeII	ACGT	2 cut(s)	214, 749
MaeIII	GTNAC	3 cut(s)	24, 434, 458
MalI	GATC	3 cut(s)	627, 692, 987
MboI	GATC	3 cut(s)	625, 690, 985
MflI	RGATCY	2 cut(s)	690, 985
MhlI	GDGCHC	1 cut(s)	8
MlyI	GAGTC	1 cut(s)	332
MmeI	TCCRAC	2 cut(s)	569, 888
MnlI	CCTC	3 cut(s)	307, 872, 872
MseI	TTAA	3 cut(s)	261, 516, 717
MslI	CAYNNNNRTG	1 cut(s)	1034
MspA1I	CMGCKG	1 cut(s)	946
MspCI	CTTAAG	1 cut(s)	260
MspR9I	CCNGG	1 cut(s)	534
Mva1269I	GAATGC	1 cut(s)	828
MvaI	CCWGG	1 cut(s)	534
MwoI	GCNNNNNNNGC	4 cut(s)	485, 497, 500, 946
NdeII	GATC	3 cut(s)	625, 690, 985
NlaIII	CATG	4 cut(s)	334, 905, 929, 940
NlaIV	GGNNCC	1 cut(s)	987
NmuCI	GTSAC	1 cut(s)	458
NspI	RCATGY	1 cut(s)	929
PaeI	GCATGC	1 cut(s)	929
PaeR7I	CTCGAG	1 cut(s)	876
PcsI	WCGNNNNNNNCGW	1 cut(s)	832
PctI	GAATGC	1 cut(s)	828
PfeI	GAWTC	1 cut(s)	413
PfoI	TCCNGGA	1 cut(s)	532
PkrI	GCNGC	8 cut(s)	61, 391, 478, 490, 493, 502, 948, 997
PleI	GAGTC	1 cut(s)	331
PmaCI	CACGTG	1 cut(s)	215
PmlI	CACGTG	1 cut(s)	215
PpsI	GAGTC	1 cut(s)	331
Ppu21I	YACGTR	1 cut(s)	215
PshBI	ATTAAT	1 cut(s)	516
Psp6I	CCWGG	1 cut(s)	532
PspCI	CACGTG	1 cut(s)	215
PspGI	CCWGG	1 cut(s)	532
PspN4I	GGNNCC	1 cut(s)	987
PspPI	GGNCC	2 cut(s)	530, 895
PspXI	VCTCGAGB	1 cut(s)	876
PsrI	GAACNNNNNNTAC	2 cut(s)	1010, 1042
PstI	CTGCAG	1 cut(s)	493
PstNI	CAGNNNCTG	1 cut(s)	497
PsuI	RGATCY	2 cut(s)	690, 985
RsaI	GTAC	1 cut(s)	887
RsaNI	GTAC	1 cut(s)	886
RseI	CAYNNNNRTG	1 cut(s)	1034
SaqAI	TTAA	3 cut(s)	261, 516, 717
SatI	GCNGC	8 cut(s)	60, 390, 477, 489, 492, 501, 947, 996
Sau3AI	GATC	3 cut(s)	625, 690, 985
Sau96I	GGNCC	2 cut(s)	530, 895
SchI	GAGTC	1 cut(s)	332
ScrFI	CCNGG	1 cut(s)	534
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	2 cut(s)	700, 906
SfcI	CTRYAG	1 cut(s)	489
Sfr274I	CTCGAG	1 cut(s)	876
SinI	GGWCC	2 cut(s)	530, 895
SlaI	CTCGAG	1 cut(s)	876
SmiMI	CAYNNNNRTG	1 cut(s)	1034
SmlI	CTYRAG	2 cut(s)	260, 876
SmoI	CTYRAG	2 cut(s)	260, 876
SphI	GCATGC	1 cut(s)	929
SsiI	CCGC	2 cut(s)	713, 944
SspMI	CTAG	5 cut(s)	303, 309, 596, 672, 951
StyD4I	CCNGG	1 cut(s)	532
TaaI	ACNGT	6 cut(s)	15, 339, 427, 646, 843, 970
TaiI	ACGT	2 cut(s)	217, 752
TaqI	TCGA	3 cut(s)	128, 321, 877
TatI	WGTACW	1 cut(s)	885
TfiI	GAWTC	1 cut(s)	413
Tru1I	TTAA	3 cut(s)	261, 516, 717
Tru9I	TTAA	3 cut(s)	261, 516, 717
TscAI	CASTG	2 cut(s)	199, 660
TseFI	GTSAC	1 cut(s)	458
TseI	GCWGC	8 cut(s)	59, 389, 476, 488, 491, 500, 946, 995
Tsp45I	GTSAC	1 cut(s)	458
TspDTI	ATGAA	6 cut(s)	105, 306, 306, 347, 737, 882
TspRI	CASTG	2 cut(s)	199, 660
Vha464I	CTTAAG	1 cut(s)	260
VpaK11BI	GGWCC	2 cut(s)	530, 895
VspI	ATTAAT	1 cut(s)	516
XapI	RAATTY	4 cut(s)	65, 112, 238, 255
XceI	RCATGY	1 cut(s)	929
XcmI	CCANNNNNNNNNTGG	1 cut(s)	337
XhoI	CTCGAG	1 cut(s)	876
XmiI	GTMKAC	1 cut(s)	567
XspI	CTAG	5 cut(s)	303, 309, 596, 672, 951
ZraI	GACGTC	1 cut(s)	750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.