Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003920

Physical Location & Seq

Genomic Coordinates Reverse (-)

1907846 .. 1909486

Gene Structure 1641 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0014400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGCGGATCATGCCATAGGAATTGACTTGGGGACAACCTACTCGTGCGTAGCAGTGTGGCAGCAAGATCGTGTTGAGATTATAGTGAACGATCAAGGCAACAGAACCACTCCATCTTATGCTACCTTCACTGATACTAAGCGATTGGTAGGAGATGCAGAACTTAACCAGATCATCAAAAACCCCGCCAATACAGTCTTTGATGCAAAGCGATTGATAGGTAGAAGATTTAGTGATGCATGTGTTCAAAGTGATTTGAAGCTTTGGCCATTCAAGGTCATCGAAGGTCCTAATGACAAGCCCATTATTGTTGTGAAAGACAAGGACCAAGAGAAACACTTTGCTGCTGAAGAAATATCATCCATGGCTACCAAAAATGCTGCTAAAATGGCTGGCCTAAATGTGATTGGTATTATAAATGAACCAACTGCTGCAGCCATTGCTTACGGCCTCAACAAGAAAGCCGGTTCGGAGAGCAAAAGAACTGTTATGATATTTGATTTAGGTGGTGGTACTATAGATGTAATAGGTGGTGGCGTCTTTGATGTGATGGCCACCGCAGGAGACACTCACCTTGGAGGTGAAGACTTTGATAACAAAATGGTGAACTATTGTGCTGAGCAATTCAAGAGGAAGCACGATTTGGACGTTAACGGGAACTCGAGAGCTCTTACGAGGTTTAAAAATGCATGTGAGAAGGCAAAGAGGAGACTGTCATTCACATCTTCAGTTGACATCGACATCGACTGTTTGGATCATGGTATTGACTTCAATTCAACTATTACTCGAGCCAAATTTGAACAATTGAACATGAATTTCTTCAAAAAGTGTATGGAGCCTGTGAAGAAGTGTTTGAGTGATGCTTGCATGGACGCTGGCAATGTGGATGATATTGTTCTCGCTGGTGGCTCTTCTAGAATTCCGAAGGTGCAAGAGCTATTGCAGTATCTTAATATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004070 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006220 GO:0006221 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009165 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009267 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016740 GO:0016741 GO:0016743 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034641 GO:0034654 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046390 GO:0046483 GO:0050896 GO:0051716 GO:0055086 GO:0071496 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00240 ko00250 ko01100 map00240 map00250 map01100

Pfam Domains

Protein Families

OTCace OTCace_N

Protein Analysis

319

Amino Acids

35.03

Weight (kDa)

6.01

Isoelectric Point (pI)

43.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	5 - 122	3.3e-40	Hsp70 protein
MreB_Mbl	PF06723	116 - 315	6.9e-12	MreB/Mbl protein
HSP70	PF00012	123 - 315	5.6e-73	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20330 AT3G20330
fragaria_vesca	FvH4_4g09330 FvH4_4g09330 FvH4_4g09330 FvH4_4g09330 FvH4_4g09330 FvH4_4g09330 FvH4_7g16631 FvH4_7g16631
malus_domestica	MD15G1397500.v1.1
prunus_persica	Prupe.4G221200_v2.0.a1
pyrus_communis	pycom15g35730
rosa_chinensis	RchiOBHm_Chr4g0402721 RchiOBHm_Chr6g0264841
rosa_laevigata	RLG00000009051 RLG00000014232
rosa_multiflora	Rmu_sc0000546.1_g000042 Rmu_sc0002451.1_g000002
rosa_roxburghii	Rroxscaffold_175G00432030 Rroxscaffold_5G00347480 Rroxscaffold_7G00203190
rosa_rugosa	Rorug04G0038000 Rorug06G0014400
rosa_samantha	Rh4AG115600 Rh4BG108100 Rh4CG122500 Rh4DG108100 Rh6AG134700 Rh6BG132300 Rh6CG130900 Rh6DG117900
rosa_wichuraiana	Rw4G009240 Rw6G011660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	416
AciI	CCGC	3 cut(s)	5, 186, 558
AclWI	GGATC	2 cut(s)	15, 762
AcoI	YGGCCR	2 cut(s)	266, 552
AcsI	RAATTY	3 cut(s)	794, 814, 918
AcuI	CTGAAG	2 cut(s)	369, 711
AcyI	GRCGYC	1 cut(s)	537
AfaI	GTAC	1 cut(s)	514
AgsI	TTSAA	9 cut(s)	248, 259, 274, 628, 772, 777, 800, 808, 823
AjuI	GAANNNNNNNTTGG	2 cut(s)	626, 658
AluBI	AGCT	3 cut(s)	262, 668, 937
AluI	AGCT	3 cut(s)	262, 668, 937
Alw21I	GWGCWC	1 cut(s)	670
Alw26I	GTCTC	2 cut(s)	558, 703
AlwI	GGATC	2 cut(s)	15, 762
Ama87I	CYCGRG	2 cut(s)	661, 786
AoxI	GGCC	4 cut(s)	266, 394, 448, 552
ApeKI	GCWGC	5 cut(s)	61, 344, 380, 431, 434
ApoI	RAATTY	3 cut(s)	794, 814, 918
Asp700I	GAANNNNTTC	1 cut(s)	818
AspS9I	GGNCC	2 cut(s)	287, 325
AsuHPI	GGTGA	3 cut(s)	563, 593, 616
AvaI	CYCGRG	2 cut(s)	661, 786
AvaII	GGWCC	2 cut(s)	287, 325
BalI	TGGCCA	2 cut(s)	268, 554
BanII	GRGCYC	1 cut(s)	670
BauI	CACGAG	1 cut(s)	43
BbsI	GAAGAC	1 cut(s)	591
Bbv12I	GWGCWC	1 cut(s)	670
BbvI	GCAGC	5 cut(s)	73, 331, 367, 418, 446
BccI	CCATC	2 cut(s)	121, 544
BceAI	ACGGC	1 cut(s)	463
BcgI	CGANNNNNNTGC	2 cut(s)	50, 84
BcoDI	GTCTC	2 cut(s)	558, 703
BfaI	CTAG	1 cut(s)	915
BfmI	CTRYAG	2 cut(s)	432, 516
BisI	GCNGC	5 cut(s)	62, 345, 381, 432, 435
BlpI	GCTNAGC	1 cut(s)	618
BlsI	GCNGC	5 cut(s)	63, 346, 382, 433, 436
Bme18I	GGWCC	2 cut(s)	287, 325
BmeT110I	CYCGRG	2 cut(s)	661, 786
BmgT120I	GGNCC	2 cut(s)	287, 325
BmiI	GGNNCC	1 cut(s)	837
BmsI	GCATC	4 cut(s)	145, 193, 226, 850
BpiI	GAAGAC	1 cut(s)	591
Bpu1102I	GCTNAGC	1 cut(s)	618
BsaHI	GRCGYC	1 cut(s)	537
BsaJI	CCNNGG	2 cut(s)	363, 574
Bse118I	RCCGGY	1 cut(s)	464
Bse3DI	GCAATG	2 cut(s)	438, 886
BseDI	CCNNGG	2 cut(s)	363, 574
BseGI	GGATG	2 cut(s)	359, 892
BseMI	GCAATG	2 cut(s)	438, 886
BseMII	CTCAG	1 cut(s)	609
BseRI	GAGGAG	1 cut(s)	721
BseXI	GCAGC	5 cut(s)	73, 331, 367, 418, 446
BshFI	GGCC	4 cut(s)	268, 396, 450, 554
BsiHKAI	GWGCWC	1 cut(s)	670
BsiHKCI	CYCGRG	2 cut(s)	661, 786
BsiSI	CCGG	1 cut(s)	465
BslFI	GGGAC	1 cut(s)	46
BsmAI	GTCTC	2 cut(s)	558, 703
BsmFI	GGGAC	1 cut(s)	46
BsnI	GGCC	4 cut(s)	268, 396, 450, 554
BsoBI	CYCGRG	2 cut(s)	661, 786
Bsp1286I	GDGCHC	1 cut(s)	670
Bsp143I	GATC	5 cut(s)	7, 67, 91, 171, 754
Bsp1720I	GCTNAGC	1 cut(s)	618
Bsp19I	CCATGG	1 cut(s)	363
BspACI	CCGC	3 cut(s)	5, 186, 558
BspANI	GGCC	4 cut(s)	268, 396, 450, 554
BspCNI	CTCAG	1 cut(s)	610
BspLI	GGNNCC	1 cut(s)	837
BspMAI	CTGCAG	1 cut(s)	436
BspPI	GGATC	2 cut(s)	15, 762
BspQI	GCTCTTC	1 cut(s)	916
BsrDI	GCAATG	2 cut(s)	438, 886
BsrFI	RCCGGY	1 cut(s)	464
BssAI	RCCGGY	1 cut(s)	464
BssECI	CCNNGG	2 cut(s)	363, 574
BssMI	GATC	5 cut(s)	7, 67, 91, 171, 754
BssNI	GRCGYC	1 cut(s)	537
BssSI	CACGAG	1 cut(s)	43
BssT1I	CCWWGG	2 cut(s)	363, 574
Bst2BI	CACGAG	1 cut(s)	43
Bst4CI	ACNGT	4 cut(s)	196, 487, 714, 749
Bst6I	CTCTTC	1 cut(s)	916
BstACI	GRCGYC	1 cut(s)	537
BstAPI	GCANNNNNTGC	1 cut(s)	440
BstC8I	GCNNGC	3 cut(s)	394, 865, 877
BstDEI	CTNAG	2 cut(s)	138, 618
BstDSI	CCRYGG	1 cut(s)	363
BstF5I	GGATG	2 cut(s)	359, 892
BstKTI	GATC	5 cut(s)	10, 70, 94, 174, 757
BstMAI	GTCTC	2 cut(s)	558, 703
BstMBI	GATC	5 cut(s)	7, 67, 91, 171, 754
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 389, 440
BstNSI	RCATGY	2 cut(s)	243, 693
BstSFI	CTRYAG	2 cut(s)	432, 516
BstV1I	GCAGC	5 cut(s)	73, 331, 367, 418, 446
BstV2I	GAAGAC	1 cut(s)	591
BsuRI	GGCC	4 cut(s)	268, 396, 450, 554
BtgI	CCRYGG	1 cut(s)	363
BtsCI	GGATG	2 cut(s)	359, 892
BtsI	GCAGTG	1 cut(s)	60
BtsIMutI	CAGTG	2 cut(s)	60, 129
Cac8I	GCNNGC	3 cut(s)	394, 865, 877
Cfr10I	RCCGGY	1 cut(s)	464
Cfr13I	GGNCC	2 cut(s)	287, 325
CseI	GACGC	2 cut(s)	526, 881
Csp6I	GTAC	1 cut(s)	513
CviAII	CATG	7 cut(s)	11, 240, 364, 690, 758, 811, 868
CviQI	GTAC	1 cut(s)	513
DdeI	CTNAG	2 cut(s)	138, 618
DpnI	GATC	5 cut(s)	9, 69, 93, 173, 756
DpnII	GATC	5 cut(s)	7, 67, 91, 171, 754
DraI	TTTAAA	1 cut(s)	682
EaeI	YGGCCR	2 cut(s)	266, 552
Eam1104I	CTCTTC	1 cut(s)	916
EarI	CTCTTC	1 cut(s)	916
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	668
Eco130I	CCWWGG	2 cut(s)	363, 574
Eco24I	GRGCYC	1 cut(s)	670
Eco47I	GGWCC	2 cut(s)	287, 325
Eco53kI	GAGCTC	1 cut(s)	668
Eco57I	CTGAAG	2 cut(s)	369, 711
Eco88I	CYCGRG	2 cut(s)	661, 786
EcoICRI	GAGCTC	1 cut(s)	668
EcoO109I	RGGNCCY	1 cut(s)	287
EcoRI	GAATTC	1 cut(s)	918
EcoT14I	CCWWGG	2 cut(s)	363, 574
EcoT22I	ATGCAT	2 cut(s)	241, 691
EcoT38I	GRGCYC	1 cut(s)	670
ErhI	CCWWGG	2 cut(s)	363, 574
FaeI	CATG	7 cut(s)	14, 243, 367, 693, 761, 814, 871
FaqI	GGGAC	1 cut(s)	46
FatI	CATG	7 cut(s)	10, 239, 363, 689, 757, 810, 867
FauI	CCCGC	1 cut(s)	193
Fnu4HI	GCNGC	5 cut(s)	62, 345, 381, 432, 435
FokI	GGATG	2 cut(s)	346, 899
FriOI	GRGCYC	1 cut(s)	670
Fsp4HI	GCNGC	5 cut(s)	62, 345, 381, 432, 435
FspBI	CTAG	1 cut(s)	915
GluI	GCNGC	5 cut(s)	62, 345, 381, 432, 435
HaeIII	GGCC	4 cut(s)	268, 396, 450, 554
HapII	CCGG	1 cut(s)	465
HgaI	GACGC	2 cut(s)	526, 881
Hin1I	GRCGYC	1 cut(s)	537
Hin1II	CATG	7 cut(s)	14, 243, 367, 693, 761, 814, 871
HincII	GTYRAC	2 cut(s)	652, 733
HindII	GTYRAC	2 cut(s)	652, 733
HindIII	AAGCTT	1 cut(s)	260
HpaI	GTTAAC	1 cut(s)	652
HpaII	CCGG	1 cut(s)	465
HphI	GGTGA	3 cut(s)	563, 593, 616
Hpy166II	GTNNAC	4 cut(s)	88, 607, 652, 733
Hpy188I	TCNGA	2 cut(s)	472, 924
Hpy188III	TCNNGA	3 cut(s)	628, 663, 915
Hpy8I	GTNNAC	4 cut(s)	88, 607, 652, 733
HpyAV	CCTTC	4 cut(s)	136, 278, 691, 919
HpyCH4III	ACNGT	4 cut(s)	196, 487, 714, 749
HpyCH4IV	ACGT	1 cut(s)	648
HpyCH4V	TGCA	8 cut(s)	158, 206, 239, 434, 689, 867, 931, 943
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 389, 440
HpyF3I	CTNAG	2 cut(s)	138, 618
HpySE526I	ACGT	1 cut(s)	648
Hsp92I	GRCGYC	1 cut(s)	537
Hsp92II	CATG	7 cut(s)	14, 243, 367, 693, 761, 814, 871
KspAI	GTTAAC	1 cut(s)	652
Kzo9I	GATC	5 cut(s)	7, 67, 91, 171, 754
LguI	GCTCTTC	1 cut(s)	916
LmnI	GCTCC	1 cut(s)	835
LpnPI	CCDG	7 cut(s)	182, 378, 478, 546, 852, 861, 888
Lsp1109I	GCAGC	5 cut(s)	73, 331, 367, 418, 446
LweI	GCATC	4 cut(s)	145, 193, 226, 850
MaeI	CTAG	1 cut(s)	915
MaeII	ACGT	1 cut(s)	648
MalI	GATC	5 cut(s)	9, 69, 93, 173, 756
MboI	GATC	5 cut(s)	7, 67, 91, 171, 754
MboII	GAAGA	7 cut(s)	237, 362, 596, 717, 811, 856, 903
MfeI	CAATTG	1 cut(s)	803
MhlI	GDGCHC	1 cut(s)	670
MlsI	TGGCCA	2 cut(s)	268, 554
MluCI	AATT	7 cut(s)	21, 623, 772, 794, 803, 814, 918
MluNI	TGGCCA	2 cut(s)	268, 554
MnlI	CCTC	5 cut(s)	461, 572, 624, 669, 699
Mox20I	TGGCCA	2 cut(s)	268, 554
Mph1103I	ATGCAT	2 cut(s)	241, 691
MroXI	GAANNNNTTC	1 cut(s)	818
MscI	TGGCCA	2 cut(s)	268, 554
MseI	TTAA	4 cut(s)	165, 651, 681, 951
Msp20I	TGGCCA	2 cut(s)	268, 554
MspI	CCGG	1 cut(s)	465
MunI	CAATTG	1 cut(s)	803
MwoI	GCNNNNNNNGC	3 cut(s)	11, 389, 440
NcoI	CCATGG	1 cut(s)	363
NdeII	GATC	5 cut(s)	7, 67, 91, 171, 754
NlaIII	CATG	7 cut(s)	14, 243, 367, 693, 761, 814, 871
NlaIV	GGNNCC	1 cut(s)	837
NsiI	ATGCAT	2 cut(s)	241, 691
NspI	RCATGY	2 cut(s)	243, 693
PaeR7I	CTCGAG	2 cut(s)	661, 786
PciSI	GCTCTTC	1 cut(s)	916
PcsI	WCGNNNNNNNCGW	1 cut(s)	645
PdmI	GAANNNNTTC	1 cut(s)	818
PkrI	GCNGC	5 cut(s)	63, 346, 382, 433, 436
PpuMI	RGGWCCY	1 cut(s)	287
PsiI	TTATAA	1 cut(s)	416
Psp124BI	GAGCTC	1 cut(s)	670
Psp5II	RGGWCCY	1 cut(s)	287
PspN4I	GGNNCC	1 cut(s)	837
PspPI	GGNCC	2 cut(s)	287, 325
PspPPI	RGGWCCY	1 cut(s)	287
PspXI	VCTCGAGB	1 cut(s)	786
PstI	CTGCAG	1 cut(s)	436
RsaI	GTAC	1 cut(s)	514
RsaNI	GTAC	1 cut(s)	513
SacI	GAGCTC	1 cut(s)	670
SapI	GCTCTTC	1 cut(s)	916
SaqAI	TTAA	4 cut(s)	165, 651, 681, 951
SatI	GCNGC	5 cut(s)	62, 345, 381, 432, 435
Sau3AI	GATC	5 cut(s)	7, 67, 91, 171, 754
Sau96I	GGNCC	2 cut(s)	287, 325
SduI	GDGCHC	1 cut(s)	670
SfaNI	GCATC	4 cut(s)	145, 193, 226, 850
SfcI	CTRYAG	2 cut(s)	432, 516
Sfr274I	CTCGAG	2 cut(s)	661, 786
SinI	GGWCC	2 cut(s)	287, 325
SlaI	CTCGAG	2 cut(s)	661, 786
SmlI	CTYRAG	2 cut(s)	661, 786
SmoI	CTYRAG	2 cut(s)	661, 786
Sse9I	AATT	7 cut(s)	21, 623, 772, 794, 803, 814, 918
SsiI	CCGC	3 cut(s)	5, 186, 558
SspMI	CTAG	1 cut(s)	915
SstI	GAGCTC	1 cut(s)	670
StyI	CCWWGG	2 cut(s)	363, 574
TaaI	ACNGT	4 cut(s)	196, 487, 714, 749
TaiI	ACGT	1 cut(s)	651
TaqI	TCGA	5 cut(s)	282, 662, 738, 744, 787
TasI	AATT	7 cut(s)	21, 623, 772, 794, 803, 814, 918
Tru1I	TTAA	4 cut(s)	165, 651, 681, 951
Tru9I	TTAA	4 cut(s)	165, 651, 681, 951
TscAI	CASTG	2 cut(s)	60, 136
TseI	GCWGC	5 cut(s)	61, 344, 380, 431, 434
TspDTI	ATGAA	2 cut(s)	435, 827
TspRI	CASTG	2 cut(s)	60, 136
VpaK11BI	GGWCC	2 cut(s)	287, 325
XapI	RAATTY	3 cut(s)	794, 814, 918
XbaI	TCTAGA	1 cut(s)	914
XceI	RCATGY	2 cut(s)	243, 693
XhoI	CTCGAG	2 cut(s)	661, 786
XmnI	GAANNNNTTC	1 cut(s)	818
XspI	CTAG	1 cut(s)	915
Zsp2I	ATGCAT	2 cut(s)	241, 691

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.