Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0003920

Physical Location & Seq

Genomic Coordinates Reverse (-)

13895254 .. 13898576

Gene Structure 3323 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G221200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGGTTACACAGAACGCTAGTTTATATTGGTTTTTTTGCGAATTTGTTGTATTGAGGCTTGAAATTGCTGAGATGGCAGCTTCATCATCACTATTTTCAACTTCATTCCAAGGGGTCATGTCGTTTCAAAATACAAATTTGTGCTACAAAGAGTTCAATTGCAGATATTCAAACTTTATCCGTAAACAATCCAGTCACTCCAACTCAAAGTACCTGACACATTCACGGTTGTTTCCCAATGAGAGATCATCAGAATTTGGACAAAATGATAAATTCTCACAAAAGAATGGGTTTTTGTGCCGGACATTGAAGATTGAAAATTTACCTTCCTTTTCAGTGGGGAACAAATTTCAACTTACTGATGTGATTGAATCTCAACAATTTGATAGAGATCTTCTCAGTGCTATATTTGAGGTTGCACGAGATATGGAGAAGATTGAAAAGAATTCACCAGGAAGCCAAATTCTTAAGGGTTATCTTATGGCTACTCTCTTCTATGAACCCTCCACAAGAACTAGGCTTTCCTTTGAATCTGCAATGAGACGGTTAGGTGGGGAAGTCTTAACAACTGAAAATGCAAGGGAGTTCTCGTCAGCAGCTAAAGGAGAAACACTTGAAGATACTATAAGAACTGTTGAGGGTTACTCTGATATTATTGTGATGCGGCACTTTGAGAGTGGTGCAGCCAAAAGGGCGGCAGCAACTGCTGGCATTCCTGTAATCAATGCAGGAGATGGTCCTGGACAACATCCAACTCAGGCTCTTTTAGATGTCTATACCATTGAAAGAGAGATAGGAAAATTGGATGGCATTAAAGTTGCACTTGTTGGAGATCTTGCTAATGGAAGGACAGTGCGCTCACTTGCATACTTGCTCGCCAGGTATAAGGATGTGAAGATTTACTTTGTCTCTCCTGATGTGGTGAAAATGAAGGATGATATAAAAGATTATTTGACGTCAAGGAAAATTGAATGGGAAGAAAGTAGTGACTTAATGGAAGTTGCTTCTAAGTGTGATGTTGTCTATCAAACTCGCATTCAACGTGAACGATTTGGAGAGAGAATTGACCTCTATGAAGAAGCTCGAGGCAAGTACATTGTGGATAGTCATGTGTTAGAGGTGATGCAGAAGCATGCTGTGGTCATGCATCCGCTGCCTAGACTTGACGAGATTACTGTTGATGTTGATGGGGACCCGAGAGCTGCCTATTTCAGACAAGCAAAGAATGGCCTCTATATTAGGATGGCTCTCTTGAAACTCCTACTTGTAGGGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004070 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006220 GO:0006221 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009165 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009267 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016740 GO:0016741 GO:0016743 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034641 GO:0034654 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046390 GO:0046483 GO:0050896 GO:0051716 GO:0055086 GO:0071496 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00240 ko00250 ko01100 map00240 map00250 map01100

Pfam Domains

Protein Families

OTCace OTCace_N

Protein Analysis

426

Amino Acids

48.38

Weight (kDa)

6.69

Isoelectric Point (pI)

32.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20330 AT3G20330
fragaria_vesca	FvH4_4g09330 FvH4_4g09330 FvH4_4g09330 FvH4_4g09330 FvH4_4g09330 FvH4_4g09330 FvH4_7g16631 FvH4_7g16631
malus_domestica	MD15G1397500.v1.1
prunus_persica	Prupe.4G221200_v2.0.a1
pyrus_communis	pycom15g35730
rosa_chinensis	RchiOBHm_Chr4g0402721 RchiOBHm_Chr6g0264841
rosa_laevigata	RLG00000009051 RLG00000014232
rosa_multiflora	Rmu_sc0000546.1_g000042 Rmu_sc0002451.1_g000002
rosa_roxburghii	Rroxscaffold_175G00432030 Rroxscaffold_5G00347480 Rroxscaffold_7G00203190
rosa_rugosa	Rorug04G0038000 Rorug06G0014400
rosa_samantha	Rh4AG115600 Rh4BG108100 Rh4CG122500 Rh4DG108100 Rh6AG134700 Rh6BG132300 Rh6CG130900 Rh6DG117900
rosa_wichuraiana	Rw4G009240 Rw6G011660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	959
AciI	CCGC	3 cut(s)	664, 695, 1151
AcsI	RAATTY	8 cut(s)	41, 136, 254, 272, 319, 347, 445, 462
AcyI	GRCGYC	1 cut(s)	956
AfaI	GTAC	2 cut(s)	212, 1094
AflII	CTTAAG	1 cut(s)	467
AjnI	CCWGG	3 cut(s)	451, 739, 878
AluBI	AGCT	4 cut(s)	80, 599, 1082, 1202
AluI	AGCT	4 cut(s)	80, 599, 1082, 1202
Alw26I	GTCTC	2 cut(s)	535, 913
AlwNI	CAGNNNCTG	1 cut(s)	704
Ama87I	CYCGRG	2 cut(s)	1083, 1195
AoxI	GGCC	1 cut(s)	1228
ApeKI	GCWGC	6 cut(s)	77, 596, 683, 698, 1153, 1202
ApoI	RAATTY	8 cut(s)	41, 136, 254, 272, 319, 347, 445, 462
AspLEI	GCGC	1 cut(s)	858
AspS9I	GGNCC	2 cut(s)	737, 1192
AsuHPI	GGTGA	3 cut(s)	441, 934, 1132
AvaI	CYCGRG	2 cut(s)	1083, 1195
AvaII	GGWCC	2 cut(s)	737, 1192
BauI	CACGAG	1 cut(s)	420
BbvI	GCAGC	6 cut(s)	89, 608, 695, 710, 1140, 1189
BccI	CCATC	5 cut(s)	67, 728, 800, 1181, 1237
BciT130I	CCWGG	3 cut(s)	453, 741, 880
BcoDI	GTCTC	2 cut(s)	535, 913
BfaI	CTAG	3 cut(s)	18, 516, 1158
BfrI	CTTAAG	1 cut(s)	467
BglI	GCCNNNNNGGC	1 cut(s)	692
BglII	AGATCT	2 cut(s)	391, 832
BisI	GCNGC	8 cut(s)	78, 597, 665, 684, 696, 699, 1154, 1203
BlsI	GCNGC	8 cut(s)	79, 598, 666, 685, 697, 700, 1155, 1204
Bme1390I	CCNGG	3 cut(s)	453, 741, 880
Bme18I	GGWCC	2 cut(s)	737, 1192
BmeT110I	CYCGRG	2 cut(s)	1083, 1195
BmgT120I	GGNCC	2 cut(s)	737, 1192
BmiI	GGNNCC	2 cut(s)	1193, 1194
BmrFI	CCNGG	3 cut(s)	453, 741, 880
BmsI	GCATC	3 cut(s)	651, 1113, 1156
BplI	GAGNNNNNCTC	4 cut(s)	381, 413, 629, 661
BsaBI	GATNNNNATC	1 cut(s)	390
BsaHI	GRCGYC	1 cut(s)	956
BsaJI	CCNNGG	1 cut(s)	109
BsaXI	ACNNNNNCTCC	2 cut(s)	575, 605
Bse1I	ACTGG	1 cut(s)	192
Bse3DI	GCAATG	1 cut(s)	543
Bse8I	GATNNNNATC	1 cut(s)	390
BseBI	CCWGG	3 cut(s)	453, 741, 880
BseDI	CCNNGG	1 cut(s)	109
BseGI	GGATG	6 cut(s)	748, 811, 895, 940, 1147, 1248
BseJI	GATNNNNATC	1 cut(s)	390
BseMI	GCAATG	1 cut(s)	543
BseMII	CTCAG	3 cut(s)	60, 412, 770
BseNI	ACTGG	1 cut(s)	192
BseXI	GCAGC	6 cut(s)	89, 608, 695, 710, 1140, 1189
BsgI	GTGCAG	1 cut(s)	702
BshFI	GGCC	1 cut(s)	1230
BsiHKCI	CYCGRG	2 cut(s)	1083, 1195
BsiSI	CCGG	1 cut(s)	301
BslFI	GGGAC	1 cut(s)	1205
BsmAI	GTCTC	2 cut(s)	535, 913
BsmBI	CGTCTC	1 cut(s)	535
BsmFI	GGGAC	1 cut(s)	1205
BsmI	GAATGC	2 cut(s)	711, 1035
BsnI	GGCC	1 cut(s)	1230
BsoBI	CYCGRG	2 cut(s)	1083, 1195
Bsp143I	GATC	3 cut(s)	245, 391, 832
BspACI	CCGC	3 cut(s)	664, 695, 1151
BspANI	GGCC	1 cut(s)	1230
BspCNI	CTCAG	3 cut(s)	61, 411, 769
BspLI	GGNNCC	2 cut(s)	1193, 1194
BspTI	CTTAAG	1 cut(s)	467
BsrDI	GCAATG	1 cut(s)	543
BsrI	ACTGG	1 cut(s)	192
BssECI	CCNNGG	1 cut(s)	109
BssMI	GATC	3 cut(s)	245, 391, 832
BssNI	GRCGYC	1 cut(s)	956
BssSI	CACGAG	1 cut(s)	420
BssT1I	CCWWGG	1 cut(s)	109
Bst2BI	CACGAG	1 cut(s)	420
Bst2UI	CCWGG	3 cut(s)	453, 741, 880
Bst4CI	ACNGT	5 cut(s)	228, 546, 634, 853, 1177
Bst6I	CTCTTC	1 cut(s)	497
BstACI	GRCGYC	1 cut(s)	956
BstAFI	CTTAAG	1 cut(s)	467
BstAPI	GCANNNNNTGC	2 cut(s)	704, 1153
BstC8I	GCNNGC	3 cut(s)	709, 876, 1134
BstDEI	CTNAG	4 cut(s)	69, 398, 756, 1008
BstF5I	GGATG	6 cut(s)	748, 811, 895, 940, 1147, 1248
BstHHI	GCGC	1 cut(s)	858
BstKTI	GATC	3 cut(s)	248, 394, 835
BstMAI	GTCTC	2 cut(s)	535, 913
BstMBI	GATC	3 cut(s)	245, 391, 832
BstMWI	GCNNNNNNNGC	4 cut(s)	74, 692, 704, 1153
BstNI	CCWGG	3 cut(s)	453, 741, 880
BstNSI	RCATGY	1 cut(s)	1136
BstSCI	CCNGG	3 cut(s)	451, 739, 878
BstV1I	GCAGC	6 cut(s)	89, 608, 695, 710, 1140, 1189
BstX2I	RGATCY	2 cut(s)	391, 832
BstYI	RGATCY	2 cut(s)	391, 832
BsuRI	GGCC	1 cut(s)	1230
BtsCI	GGATG	6 cut(s)	748, 811, 895, 940, 1147, 1248
BtsIMutI	CAGTG	3 cut(s)	342, 406, 858
Cac8I	GCNNGC	3 cut(s)	709, 876, 1134
CaiI	CAGNNNCTG	1 cut(s)	704
CfoI	GCGC	1 cut(s)	858
Cfr13I	GGNCC	2 cut(s)	737, 1192
Csp6I	GTAC	2 cut(s)	211, 1093
CviAII	CATG	4 cut(s)	118, 1109, 1133, 1144
CviQI	GTAC	2 cut(s)	211, 1093
DdeI	CTNAG	4 cut(s)	69, 398, 756, 1008
DpnI	GATC	3 cut(s)	247, 393, 834
DpnII	GATC	3 cut(s)	245, 391, 832
Eam1104I	CTCTTC	1 cut(s)	497
EarI	CTCTTC	1 cut(s)	497
Eco130I	CCWWGG	1 cut(s)	109
Eco47I	GGWCC	2 cut(s)	737, 1192
Eco88I	CYCGRG	2 cut(s)	1083, 1195
EcoO109I	RGGNCCY	1 cut(s)	1192
EcoRI	GAATTC	1 cut(s)	445
EcoRII	CCWGG	3 cut(s)	451, 739, 878
EcoT14I	CCWWGG	1 cut(s)	109
EcoT22I	ATGCAT	1 cut(s)	1149
ErhI	CCWWGG	1 cut(s)	109
Esp3I	CGTCTC	1 cut(s)	535
FaeI	CATG	4 cut(s)	121, 1112, 1136, 1147
FalI	AAGNNNNNCTT	4 cut(s)	807, 839, 887, 919
FaqI	GGGAC	1 cut(s)	1205
FatI	CATG	4 cut(s)	117, 1108, 1132, 1143
Fnu4HI	GCNGC	8 cut(s)	78, 597, 665, 684, 696, 699, 1154, 1203
FokI	GGATG	6 cut(s)	735, 818, 902, 947, 1134, 1255
Fsp4HI	GCNGC	8 cut(s)	78, 597, 665, 684, 696, 699, 1154, 1203
FspBI	CTAG	3 cut(s)	18, 516, 1158
GlaI	GCGC	1 cut(s)	857
GluI	GCNGC	8 cut(s)	78, 597, 665, 684, 696, 699, 1154, 1203
HaeIII	GGCC	1 cut(s)	1230
HapII	CCGG	1 cut(s)	301
HhaI	GCGC	1 cut(s)	858
Hin1I	GRCGYC	1 cut(s)	956
Hin1II	CATG	4 cut(s)	121, 1112, 1136, 1147
Hin6I	GCGC	1 cut(s)	856
HinP1I	GCGC	1 cut(s)	856
HinfI	GANTC	2 cut(s)	371, 530
HpaII	CCGG	1 cut(s)	301
HphI	GGTGA	3 cut(s)	441, 934, 1132
Hpy166II	GTNNAC	2 cut(s)	185, 1046
Hpy188I	TCNGA	3 cut(s)	253, 649, 1214
Hpy188III	TCNNGA	2 cut(s)	914, 1252
Hpy8I	GTNNAC	2 cut(s)	185, 1046
HpyAV	CCTTC	3 cut(s)	336, 840, 925
HpyCH4III	ACNGT	5 cut(s)	228, 546, 634, 853, 1177
HpyCH4IV	ACGT	2 cut(s)	956, 1042
HpyF10VI	GCNNNNNNNGC	4 cut(s)	74, 692, 704, 1153
HpyF3I	CTNAG	4 cut(s)	69, 398, 756, 1008
HpySE526I	ACGT	2 cut(s)	956, 1042
Hsp92I	GRCGYC	1 cut(s)	956
Hsp92II	CATG	4 cut(s)	121, 1112, 1136, 1147
HspAI	GCGC	1 cut(s)	856
KflI	GGGWCCC	1 cut(s)	1192
Kzo9I	GATC	3 cut(s)	245, 391, 832
Lsp1109I	GCAGC	6 cut(s)	89, 608, 695, 710, 1140, 1189
LweI	GCATC	3 cut(s)	651, 1113, 1156
MaeI	CTAG	3 cut(s)	18, 516, 1158
MaeII	ACGT	2 cut(s)	956, 1042
MaeIII	GTNAC	4 cut(s)	4, 194, 641, 986
MalI	GATC	3 cut(s)	247, 393, 834
MboI	GATC	3 cut(s)	245, 391, 832
MboII	GAAGA	8 cut(s)	322, 386, 445, 484, 629, 907, 989, 1088
MfeI	CAATTG	1 cut(s)	157
MflI	RGATCY	2 cut(s)	391, 832
MmeI	TCCRAC	3 cut(s)	225, 776, 808
MnlI	CCTC	8 cut(s)	48, 406, 514, 631, 1079, 1079, 1111, 1241
Mph1103I	ATGCAT	1 cut(s)	1149
MseI	TTAA	4 cut(s)	468, 563, 813, 992
MspA1I	CMGCKG	1 cut(s)	1153
MspCI	CTTAAG	1 cut(s)	467
MspI	CCGG	1 cut(s)	301
MspR9I	CCNGG	3 cut(s)	453, 741, 880
MunI	CAATTG	1 cut(s)	157
Mva1269I	GAATGC	2 cut(s)	711, 1035
MvaI	CCWGG	3 cut(s)	453, 741, 880
MwoI	GCNNNNNNNGC	4 cut(s)	74, 692, 704, 1153
NdeII	GATC	3 cut(s)	245, 391, 832
NlaIII	CATG	4 cut(s)	121, 1112, 1136, 1147
NlaIV	GGNNCC	2 cut(s)	1193, 1194
NmuCI	GTSAC	2 cut(s)	194, 986
NsiI	ATGCAT	1 cut(s)	1149
NspI	RCATGY	1 cut(s)	1136
PaeI	GCATGC	1 cut(s)	1136
PaeR7I	CTCGAG	1 cut(s)	1083
PcsI	WCGNNNNNNNCGW	1 cut(s)	1039
PctI	GAATGC	2 cut(s)	711, 1035
PfeI	GAWTC	2 cut(s)	371, 530
PfoI	TCCNGGA	1 cut(s)	739
PkrI	GCNGC	8 cut(s)	79, 598, 666, 685, 697, 700, 1155, 1204
PpuMI	RGGWCCY	1 cut(s)	1192
Psp5II	RGGWCCY	1 cut(s)	1192
Psp6I	CCWGG	3 cut(s)	451, 739, 878
PspGI	CCWGG	3 cut(s)	451, 739, 878
PspN4I	GGNNCC	2 cut(s)	1193, 1194
PspPI	GGNCC	2 cut(s)	737, 1192
PspPPI	RGGWCCY	1 cut(s)	1192
PspXI	VCTCGAGB	1 cut(s)	1083
PstNI	CAGNNNCTG	1 cut(s)	704
PsuI	RGATCY	2 cut(s)	391, 832
RsaI	GTAC	2 cut(s)	212, 1094
RsaNI	GTAC	2 cut(s)	211, 1093
SaqAI	TTAA	4 cut(s)	468, 563, 813, 992
SatI	GCNGC	8 cut(s)	78, 597, 665, 684, 696, 699, 1154, 1203
Sau3AI	GATC	3 cut(s)	245, 391, 832
Sau96I	GGNCC	2 cut(s)	737, 1192
ScrFI	CCNGG	3 cut(s)	453, 741, 880
SfaNI	GCATC	3 cut(s)	651, 1113, 1156
Sfr274I	CTCGAG	1 cut(s)	1083
SinI	GGWCC	2 cut(s)	737, 1192
SlaI	CTCGAG	1 cut(s)	1083
SmlI	CTYRAG	2 cut(s)	467, 1083
SmoI	CTYRAG	2 cut(s)	467, 1083
SphI	GCATGC	1 cut(s)	1136
SsiI	CCGC	3 cut(s)	664, 695, 1151
SspMI	CTAG	3 cut(s)	18, 516, 1158
StyD4I	CCNGG	3 cut(s)	451, 739, 878
StyI	CCWWGG	1 cut(s)	109
TaaI	ACNGT	5 cut(s)	228, 546, 634, 853, 1177
TaiI	ACGT	2 cut(s)	959, 1045
TaqI	TCGA	1 cut(s)	1084
TatI	WGTACW	1 cut(s)	1092
TauI	GCSGC	2 cut(s)	667, 698
TfiI	GAWTC	2 cut(s)	371, 530
Tru1I	TTAA	4 cut(s)	468, 563, 813, 992
Tru9I	TTAA	4 cut(s)	468, 563, 813, 992
TscAI	CASTG	3 cut(s)	342, 406, 858
TseFI	GTSAC	2 cut(s)	194, 986
TseI	GCWGC	6 cut(s)	77, 596, 683, 698, 1153, 1202
Tsp45I	GTSAC	2 cut(s)	194, 986
TspDTI	ATGAA	5 cut(s)	72, 93, 513, 944, 1089
TspGWI	ACGGA	1 cut(s)	170
TspRI	CASTG	3 cut(s)	342, 406, 858
Vha464I	CTTAAG	1 cut(s)	467
VpaK11BI	GGWCC	2 cut(s)	737, 1192
XapI	RAATTY	8 cut(s)	41, 136, 254, 272, 319, 347, 445, 462
XceI	RCATGY	1 cut(s)	1136
XhoI	CTCGAG	1 cut(s)	1083
XspI	CTAG	3 cut(s)	18, 516, 1158
ZraI	GACGTC	1 cut(s)	957
Zsp2I	ATGCAT	1 cut(s)	1149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.