Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0003920

Physical Location & Seq

Genomic Coordinates Reverse (-)

24921521 .. 24924787

Gene Structure 3267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG115600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGAGAAGATTGAGAAGAATTCTCTGGGAAGCCAAATTCTTAAGGGTTATCTTATGGCTACTCTCTTTTATGAACCATCCACTAGAACTAGACTTTCATTCGAGTCTGCCATGAAACGGTTGGGCGGGGAAGTTTTGACTACTGAAAATGCAAGGGAGTTTTCTTCAGCAGCTAAAGGAGAAACTCTTGAAGATTCTATAAGAACTGTTGAAGGTTACTCGGATATAATTGTAATGCGTCACTTTGAGAGTGGTGCAGCAAAAAGAGCTGCAGCAACTGCTGCCATTCCTATAATTAATGCAGGAGATGGTCCTGGACAACATCCAACGCAGGCTCTTTTAGATGTCTACACTATTGAAAGGGAGATAGGAAAGCTAGATGGCATTAGAGTTGCGCTTGTTGGTGATCTTGCTAATGGAAGGACTGTGCGCTCACTGGCATACTTGCTTGCTAGGTATAATGATGTGAAGATCTATTTCGTATCTCCTGATGCGGTTAAAATGAAGGATGATATAAAAGATTATTTGACGTCAAAGAAAGTTGAGTGGGAAGAAAGTGGTGATTTGATGGAAGTTGCTTCCAAGTGTGATGTTCTTTATCAAACTCGCATTCAGCGTGAACGGTTTGGAGAAAGAATTGACCTCTATGAAGAAGCTCGAGGCAAGTACATTGTGGACCATCATGTGTTGGATGTGATGCAGAAGCATGCTGTGGTCATGCACCCGCTGCCTAGACTTGATGAGATTACTGTGGATGTTGATGGGGATCCGAGAGCTGCCTATTTCAGACAAGCAAAGAACGGCCTATACATTAGGATGGCACTCTTGAAACTACTACTTGTAGGGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004070 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006220 GO:0006221 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009165 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009267 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016740 GO:0016741 GO:0016743 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034641 GO:0034654 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046390 GO:0046483 GO:0050896 GO:0051716 GO:0055086 GO:0071496 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00240 ko00250 ko01100 map00240 map00250 map01100

Pfam Domains

Protein Families

OTCace OTCace_N

Protein Analysis

283

Amino Acids

31.85

Weight (kDa)

6.13

Isoelectric Point (pI)

24.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OTCace_N	PF02729	6 - 120	3.6e-40	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
OTCace	PF00185	127 - 278	1.3e-32	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20330 AT3G20330
fragaria_vesca	FvH4_4g09330 FvH4_4g09330 FvH4_4g09330 FvH4_4g09330 FvH4_4g09330 FvH4_4g09330 FvH4_7g16631 FvH4_7g16631
malus_domestica	MD15G1397500.v1.1
prunus_persica	Prupe.4G221200_v2.0.a1
pyrus_communis	pycom15g35730
rosa_chinensis	RchiOBHm_Chr4g0402721 RchiOBHm_Chr6g0264841
rosa_laevigata	RLG00000009051 RLG00000014232
rosa_multiflora	Rmu_sc0000546.1_g000042 Rmu_sc0002451.1_g000002
rosa_roxburghii	Rroxscaffold_175G00432030 Rroxscaffold_5G00347480 Rroxscaffold_7G00203190
rosa_rugosa	Rorug04G0038000 Rorug06G0014400
rosa_samantha	Rh4AG115600 Rh4BG108100 Rh4CG122500 Rh4DG108100 Rh6AG134700 Rh6BG132300 Rh6CG130900 Rh6DG117900
rosa_wichuraiana	Rw4G009240 Rw6G011660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	533
AccI	GTMKAC	1 cut(s)	348
AciI	CCGC	3 cut(s)	126, 494, 725
AclWI	GGATC	2 cut(s)	761, 774
AcsI	RAATTY	2 cut(s)	19, 36
AcuI	CTGAAG	1 cut(s)	150
AcyI	GRCGYC	1 cut(s)	530
AfaI	GTAC	1 cut(s)	668
AfiI	CCNNNNNNNGG	1 cut(s)	117
AflII	CTTAAG	1 cut(s)	41
AgsI	TTSAA	4 cut(s)	191, 212, 359, 829
AjnI	CCWGG	1 cut(s)	313
AluBI	AGCT	5 cut(s)	173, 269, 376, 656, 776
AluI	AGCT	5 cut(s)	173, 269, 376, 656, 776
AlwI	GGATC	2 cut(s)	761, 774
AlwNI	CAGNNNCTG	1 cut(s)	278
Ama87I	CYCGRG	1 cut(s)	657
AoxI	GGCC	1 cut(s)	802
ApeKI	GCWGC	7 cut(s)	170, 257, 269, 272, 281, 727, 776
ApoI	RAATTY	2 cut(s)	19, 36
AseI	ATTAAT	1 cut(s)	297
AspLEI	GCGC	2 cut(s)	397, 432
AspS9I	GGNCC	2 cut(s)	311, 676
AsuHPI	GGTGA	2 cut(s)	416, 572
AvaI	CYCGRG	1 cut(s)	657
AvaII	GGWCC	2 cut(s)	311, 676
BamHI	GGATCC	1 cut(s)	766
BbvI	GCAGC	7 cut(s)	182, 256, 268, 269, 284, 714, 763
BccI	CCATC	7 cut(s)	85, 302, 374, 562, 687, 755, 811
BceAI	ACGGC	1 cut(s)	817
BciT130I	CCWGG	1 cut(s)	315
BfaI	CTAG	5 cut(s)	84, 90, 377, 453, 732
BfmI	CTRYAG	1 cut(s)	270
BfrI	CTTAAG	1 cut(s)	41
BglII	AGATCT	1 cut(s)	471
BisI	GCNGC	7 cut(s)	171, 258, 270, 273, 282, 728, 777
BlsI	GCNGC	7 cut(s)	172, 259, 271, 274, 283, 729, 778
Bme1390I	CCNGG	1 cut(s)	315
Bme18I	GGWCC	2 cut(s)	311, 676
BmeT110I	CYCGRG	1 cut(s)	657
BmgT120I	GGNCC	2 cut(s)	311, 676
BmiI	GGNNCC	1 cut(s)	768
BmrFI	CCNGG	1 cut(s)	315
BmsI	GCATC	2 cut(s)	481, 687
BsaBI	GATNNNNATC	1 cut(s)	765
BsaHI	GRCGYC	1 cut(s)	530
Bsc4I	CCNNNNNNNGG	1 cut(s)	117
Bse1I	ACTGG	1 cut(s)	441
Bse8I	GATNNNNATC	1 cut(s)	765
BseBI	CCWGG	1 cut(s)	315
BseGI	GGATG	6 cut(s)	77, 322, 514, 697, 760, 822
BseJI	GATNNNNATC	1 cut(s)	765
BseLI	CCNNNNNNNGG	1 cut(s)	117
BseNI	ACTGG	1 cut(s)	441
BseXI	GCAGC	7 cut(s)	182, 256, 268, 269, 284, 714, 763
BsgI	GTGCAG	1 cut(s)	276
BshFI	GGCC	1 cut(s)	804
BsiHKCI	CYCGRG	1 cut(s)	657
BslI	CCNNNNNNNGG	1 cut(s)	117
BsmI	GAATGC	1 cut(s)	609
BsnI	GGCC	1 cut(s)	804
BsoBI	CYCGRG	1 cut(s)	657
Bsp143I	GATC	3 cut(s)	406, 471, 766
BspACI	CCGC	3 cut(s)	126, 494, 725
BspANI	GGCC	1 cut(s)	804
BspLI	GGNNCC	1 cut(s)	768
BspMAI	CTGCAG	1 cut(s)	274
BspPI	GGATC	2 cut(s)	761, 774
BspTI	CTTAAG	1 cut(s)	41
BsrI	ACTGG	1 cut(s)	441
BssMI	GATC	3 cut(s)	406, 471, 766
BssNI	GRCGYC	1 cut(s)	530
Bst2UI	CCWGG	1 cut(s)	315
Bst4CI	ACNGT	5 cut(s)	120, 208, 427, 624, 751
BstACI	GRCGYC	1 cut(s)	530
BstAFI	CTTAAG	1 cut(s)	41
BstAPI	GCANNNNNTGC	3 cut(s)	278, 281, 727
BstC8I	GCNNGC	3 cut(s)	333, 450, 708
BstF5I	GGATG	6 cut(s)	77, 322, 514, 697, 760, 822
BstHHI	GCGC	2 cut(s)	397, 432
BstKTI	GATC	3 cut(s)	409, 474, 769
BstMBI	GATC	3 cut(s)	406, 471, 766
BstMWI	GCNNNNNNNGC	4 cut(s)	266, 278, 281, 727
BstNI	CCWGG	1 cut(s)	315
BstNSI	RCATGY	1 cut(s)	710
BstSCI	CCNGG	1 cut(s)	313
BstSFI	CTRYAG	1 cut(s)	270
BstV1I	GCAGC	7 cut(s)	182, 256, 268, 269, 284, 714, 763
BstX2I	RGATCY	2 cut(s)	471, 766
BstYI	RGATCY	2 cut(s)	471, 766
BsuRI	GGCC	1 cut(s)	804
BtsCI	GGATG	6 cut(s)	77, 322, 514, 697, 760, 822
BtsIMutI	CAGTG	1 cut(s)	434
Cac8I	GCNNGC	3 cut(s)	333, 450, 708
CaiI	CAGNNNCTG	1 cut(s)	278
CfoI	GCGC	2 cut(s)	397, 432
Cfr13I	GGNCC	2 cut(s)	311, 676
CseI	GACGC	1 cut(s)	227
Csp6I	GTAC	1 cut(s)	667
CviAII	CATG	4 cut(s)	112, 683, 707, 718
CviJI	RGCY	9 cut(s)	33, 59, 173, 269, 335, 376, 656, 776, 804
CviKI_1	RGCY	9 cut(s)	33, 59, 173, 269, 335, 376, 656, 776, 804
CviQI	GTAC	1 cut(s)	667
DpnI	GATC	3 cut(s)	408, 473, 768
DpnII	GATC	3 cut(s)	406, 471, 766
Eco47I	GGWCC	2 cut(s)	311, 676
Eco57I	CTGAAG	1 cut(s)	150
Eco88I	CYCGRG	1 cut(s)	657
EcoRI	GAATTC	1 cut(s)	19
EcoRII	CCWGG	1 cut(s)	313
FaeI	CATG	4 cut(s)	115, 686, 710, 721
FatI	CATG	4 cut(s)	111, 682, 706, 717
FauI	CCCGC	2 cut(s)	119, 732
FblI	GTMKAC	1 cut(s)	348
Fnu4HI	GCNGC	7 cut(s)	171, 258, 270, 273, 282, 728, 777
FokI	GGATG	6 cut(s)	64, 309, 521, 704, 767, 829
Fsp4HI	GCNGC	7 cut(s)	171, 258, 270, 273, 282, 728, 777
FspBI	CTAG	5 cut(s)	84, 90, 377, 453, 732
GlaI	GCGC	2 cut(s)	396, 431
GluI	GCNGC	7 cut(s)	171, 258, 270, 273, 282, 728, 777
HaeIII	GGCC	1 cut(s)	804
HgaI	GACGC	1 cut(s)	227
HhaI	GCGC	2 cut(s)	397, 432
Hin1I	GRCGYC	1 cut(s)	530
Hin1II	CATG	4 cut(s)	115, 686, 710, 721
Hin6I	GCGC	2 cut(s)	395, 430
HinP1I	GCGC	2 cut(s)	395, 430
HinfI	GANTC	2 cut(s)	104, 194
HphI	GGTGA	2 cut(s)	416, 572
Hpy166II	GTNNAC	3 cut(s)	349, 620, 676
Hpy188I	TCNGA	3 cut(s)	223, 771, 788
Hpy188III	TCNNGA	3 cut(s)	188, 488, 826
Hpy8I	GTNNAC	3 cut(s)	349, 620, 676
HpyAV	CCTTC	3 cut(s)	206, 414, 499
HpyCH4III	ACNGT	5 cut(s)	120, 208, 427, 624, 751
HpyCH4IV	ACGT	1 cut(s)	530
HpyCH4V	TGCA	6 cut(s)	152, 257, 272, 302, 700, 721
HpyF10VI	GCNNNNNNNGC	4 cut(s)	266, 278, 281, 727
HpySE526I	ACGT	1 cut(s)	530
Hsp92I	GRCGYC	1 cut(s)	530
Hsp92II	CATG	4 cut(s)	115, 686, 710, 721
HspAI	GCGC	2 cut(s)	395, 430
Kzo9I	GATC	3 cut(s)	406, 471, 766
LpnPI	CCDG	7 cut(s)	11, 288, 300, 317, 327, 422, 501
Lsp1109I	GCAGC	7 cut(s)	182, 256, 268, 269, 284, 714, 763
LweI	GCATC	2 cut(s)	481, 687
MaeI	CTAG	5 cut(s)	84, 90, 377, 453, 732
MaeII	ACGT	1 cut(s)	530
MaeIII	GTNAC	2 cut(s)	215, 239
MalI	GATC	3 cut(s)	408, 473, 768
MboI	GATC	3 cut(s)	406, 471, 766
MboII	GAAGA	7 cut(s)	19, 28, 156, 203, 481, 563, 662
MflI	RGATCY	2 cut(s)	471, 766
MluCI	AATT	5 cut(s)	19, 36, 228, 294, 636
MlyI	GAGTC	1 cut(s)	113
MmeI	TCCRAC	2 cut(s)	350, 669
MnlI	CCTC	2 cut(s)	653, 653
MseI	TTAA	3 cut(s)	42, 297, 498
MslI	CAYNNNNRTG	1 cut(s)	815
MspA1I	CMGCKG	1 cut(s)	727
MspCI	CTTAAG	1 cut(s)	41
MspR9I	CCNGG	1 cut(s)	315
Mva1269I	GAATGC	1 cut(s)	609
MvaI	CCWGG	1 cut(s)	315
MwoI	GCNNNNNNNGC	4 cut(s)	266, 278, 281, 727
NdeII	GATC	3 cut(s)	406, 471, 766
NlaIII	CATG	4 cut(s)	115, 686, 710, 721
NlaIV	GGNNCC	1 cut(s)	768
NmuCI	GTSAC	1 cut(s)	239
NspI	RCATGY	1 cut(s)	710
PaeI	GCATGC	1 cut(s)	710
PaeR7I	CTCGAG	1 cut(s)	657
PcsI	WCGNNNNNNNCGW	1 cut(s)	613
PctI	GAATGC	1 cut(s)	609
PfeI	GAWTC	1 cut(s)	194
PfoI	TCCNGGA	1 cut(s)	313
PkrI	GCNGC	7 cut(s)	172, 259, 271, 274, 283, 729, 778
PleI	GAGTC	1 cut(s)	112
PpsI	GAGTC	1 cut(s)	112
PshBI	ATTAAT	1 cut(s)	297
Psp6I	CCWGG	1 cut(s)	313
PspGI	CCWGG	1 cut(s)	313
PspN4I	GGNNCC	1 cut(s)	768
PspPI	GGNCC	2 cut(s)	311, 676
PspXI	VCTCGAGB	1 cut(s)	657
PsrI	GAACNNNNNNTAC	2 cut(s)	791, 823
PstI	CTGCAG	1 cut(s)	274
PstNI	CAGNNNCTG	1 cut(s)	278
PsuI	RGATCY	2 cut(s)	471, 766
RsaI	GTAC	1 cut(s)	668
RsaNI	GTAC	1 cut(s)	667
RseI	CAYNNNNRTG	1 cut(s)	815
SaqAI	TTAA	3 cut(s)	42, 297, 498
SatI	GCNGC	7 cut(s)	171, 258, 270, 273, 282, 728, 777
Sau3AI	GATC	3 cut(s)	406, 471, 766
Sau96I	GGNCC	2 cut(s)	311, 676
SchI	GAGTC	1 cut(s)	113
ScrFI	CCNGG	1 cut(s)	315
SetI	ASST	9 cut(s)	175, 217, 271, 378, 458, 533, 645, 658, 778
SfaNI	GCATC	2 cut(s)	481, 687
SfcI	CTRYAG	1 cut(s)	270
Sfr274I	CTCGAG	1 cut(s)	657
SinI	GGWCC	2 cut(s)	311, 676
SlaI	CTCGAG	1 cut(s)	657
SmiMI	CAYNNNNRTG	1 cut(s)	815
SmlI	CTYRAG	2 cut(s)	41, 657
SmoI	CTYRAG	2 cut(s)	41, 657
SphI	GCATGC	1 cut(s)	710
Sse9I	AATT	5 cut(s)	19, 36, 228, 294, 636
SsiI	CCGC	3 cut(s)	126, 494, 725
SspMI	CTAG	5 cut(s)	84, 90, 377, 453, 732
StyD4I	CCNGG	1 cut(s)	313
TaaI	ACNGT	5 cut(s)	120, 208, 427, 624, 751
TaiI	ACGT	1 cut(s)	533
TaqI	TCGA	2 cut(s)	102, 658
TasI	AATT	5 cut(s)	19, 36, 228, 294, 636
TatI	WGTACW	1 cut(s)	666
TfiI	GAWTC	1 cut(s)	194
Tru1I	TTAA	3 cut(s)	42, 297, 498
Tru9I	TTAA	3 cut(s)	42, 297, 498
TscAI	CASTG	1 cut(s)	441
TseFI	GTSAC	1 cut(s)	239
TseI	GCWGC	7 cut(s)	170, 257, 269, 272, 281, 727, 776
Tsp45I	GTSAC	1 cut(s)	239
TspDTI	ATGAA	5 cut(s)	87, 87, 128, 518, 663
TspRI	CASTG	1 cut(s)	441
Vha464I	CTTAAG	1 cut(s)	41
VpaK11BI	GGWCC	2 cut(s)	311, 676
VspI	ATTAAT	1 cut(s)	297
XapI	RAATTY	2 cut(s)	19, 36
XceI	RCATGY	1 cut(s)	710
XcmI	CCANNNNNNNNNTGG	1 cut(s)	118
XhoI	CTCGAG	1 cut(s)	657
XmiI	GTMKAC	1 cut(s)	348
XspI	CTAG	5 cut(s)	84, 90, 377, 453, 732
ZraI	GACGTC	1 cut(s)	531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.